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Граф коммитов

160 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
1b81d90eaa Minor cleanups required for orte-dvm operation 2016-03-01 18:12:53 -08:00
Ralph Castain
e8d347d7bd Add missing includes 2016-02-24 08:56:02 -06:00
Ralph Castain
309e23ab3a Fix minor typo 2016-02-20 01:33:10 -08:00
Ralph Castain
0c72ba89b9 Cleanup the output-filename options so they work as expected. Have the remote nodes output locally to the files instead of sending it all back to the HNP.
Fix Solaris issues by renaming struct field
2016-02-19 12:41:46 -08:00
Ralph Castain
6e68d758b9 Cleanup some valgrind complaints about jumps with uninitialized values. Fix a few IOF issues reported by Mark Santcroos when submitting jobs from tools. Add the ability to pass directives to the --output-filename option that tell ORTE to (a) not include the jobid in the path to the output files, and (b) not to copy the output to the tool (i.e., just store it in the files).
ck

Remove stale debug

Fix a segfault if no subscribers are present
2016-02-18 16:30:37 -08:00
Ralph Castain
50431001a3 Modify the IOF subsystem to handle per-job directives for redirecting IO to files, tagging IO, and timestamping IO.
Fix stdin reader
2016-02-16 18:54:38 -08:00
Nathan Hjelm
8b5810f7f7 mca/base: add priority output to mca_base_select
The mca_base_select function uses returned priorities to select the
best component/module. This priority may be of use to the caller so
pass that information back in an optional argument. If the priority is
not needed pass NULL.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-19 12:32:41 -06:00
Nathan Hjelm
4d92c9989e more c99 updates
This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-25 10:14:13 -06:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Gilles Gouaillardet
2e384a3b65 initialize common symbols from orte
A few uninitialized common symbols are remaining (generated by flex) :
 * orte/mca/rmaps/rank_file/rmaps_rank_file_lex.c: orte_rmaps_rank_file_leng
 * orte/mca/rmaps/rank_file/rmaps_rank_file_lex.c: orte_rmaps_rank_file_text
 * orte/util/hostfile/hostfile_lex.c: orte_util_hostfile_leng
 * orte/util/hostfile/hostfile_lex.c: orte_util_hostfile_text
2015-05-08 10:11:58 +09:00
Nathan Hjelm
b68d66bb9b MCA: Add the project/project version to the MCA base component
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.

All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:04 -06:00
Gilles Gouaillardet
dc0bc756dc iof/base: fix misc memory leak
as reported by Coverity with CID 1196732
2015-03-10 14:37:53 +09:00
Howard Pritchard
bf89131f9e add owner files to opa/ompi/orte mca directories
This commit adds an owner file in each of the component directories
for each framework.  This allows for a simple script to parse
the contents of the files and generate, among other things, tables
to be used on the project's wiki page.  Currently there are two
"fields" in the file, an owner and a status.  A tool to parse
the files and generate tables for the wiki page will be added
in a subsequent commit.
2015-02-22 15:10:23 -07:00
Ralph Castain
251084a2da When a tool requests the spawn of a new job, then exclusively forward output to that tool - the DVM should not output its own copy as well. 2015-02-04 07:59:47 -08:00
Ralph Castain
8c837d3cb3 Doh - if we can't output an entire block, then we need to adjust the number of bytes remaining to be output or else we will output duplicate bytes when next we are able to write. 2014-11-07 13:13:13 -08:00
Ralph Castain
4fc4a8346b Fix a couple of minor issues. Ensure usock isn't used if the session dirs aren't setup. Protect an oddball case where orte_xml_fp is NULL. 2014-10-09 20:58:46 -07:00
Ralph Castain
5ad9795bd8 Cleanup some potential memory overruns
cmr=v1.7.5:reviewer=jsquyres

This commit was SVN r30331.
2014-01-19 16:31:26 +00:00
Jeff Squyres
038116e4b8 orte_iof_base.output_limit is an unsigned type; just initialize it to INT_MAX
cmr=v1.7.4:reviewer=rhc

This commit was SVN r29693.
2013-11-13 19:36:43 +00:00
Ralph Castain
2680bff88e The function orte_iof_base_setup_prefork attempts to create a pty for
child stdout and falls back to plain pipe if openpty fails. Child uses
the 'usepty' flag to decide whether to treat this descriptor as a pty
or as a pipe.
Set 'usepty' flag to 0 upon openpty failure to inform the child that
it isn't dealing with a pty even though pty has been requested.


Thanks to Michal Peclo for reporting it and providing a patch.

cmr:v1.7.3:reviewer=jsquyres
cmr:v1.6.6:reviewer=jsquyres

This commit was SVN r29169.
2013-09-15 15:33:51 +00:00
Ralph Castain
a200e4f865 As per the RFC, bring in the ORTE async progress code and the rewrite of OOB:
*** THIS RFC INCLUDES A MINOR CHANGE TO THE MPI-RTE INTERFACE ***

Note: during the course of this work, it was necessary to completely separate the MPI and RTE progress engines. There were multiple places in the MPI layer where ORTE_WAIT_FOR_COMPLETION was being used. A new OMPI_WAIT_FOR_COMPLETION macro was created (defined in ompi/mca/rte/rte.h) that simply cycles across opal_progress until the provided flag becomes false. Places where the MPI layer blocked waiting for RTE to complete an event have been modified to use this macro.

***************************************************************************************

I am reissuing this RFC because of the time that has passed since its original release. Since its initial release and review, I have debugged it further to ensure it fully supports tests like loop_spawn. It therefore seems ready for merge back to the trunk. Given its prior review, I have set the timeout for one week.

The code is in  https://bitbucket.org/rhc/ompi-oob2


WHAT:    Rewrite of ORTE OOB

WHY:       Support asynchronous progress and a host of other features

WHEN:    Wed, August 21

SYNOPSIS:
The current OOB has served us well, but a number of limitations have been identified over the years. Specifically:

* it is only progressed when called via opal_progress, which can lead to hangs or recursive calls into libevent (which is not supported by that code)

* we've had issues when multiple NICs are available as the code doesn't "shift" messages between transports - thus, all nodes had to be available via the same TCP interface.

* the OOB "unloads" incoming opal_buffer_t objects during the transmission, thus preventing use of OBJ_RETAIN in the code when repeatedly sending the same message to multiple recipients

* there is no failover mechanism across NICs - if the selected NIC (or its attached switch) fails, we are forced to abort

* only one transport (i.e., component) can be "active"


The revised OOB resolves these problems:

* async progress is used for all application processes, with the progress thread blocking in the event library

* each available TCP NIC is supported by its own TCP module. The ability to asynchronously progress each module independently is provided, but not enabled by default (a runtime MCA parameter turns it "on")

* multi-address TCP NICs (e.g., a NIC with both an IPv4 and IPv6 address, or with virtual interfaces) are supported - reachability is determined by comparing the contact info for a peer against all addresses within the range covered by the address/mask pairs for the NIC.

* a message that arrives on one TCP NIC is automatically shifted to whatever NIC that is connected to the next "hop" if that peer cannot be reached by the incoming NIC. If no TCP module will reach the peer, then the OOB attempts to send the message via all other available components - if none can reach the peer, then an "error" is reported back to the RML, which then calls the errmgr for instructions.

* opal_buffer_t now conforms to standard object rules re OBJ_RETAIN as we no longer "unload" the incoming object

* NIC failure is reported to the TCP component, which then tries to resend the message across any other available TCP NIC. If that doesn't work, then the message is given back to the OOB base to try using other components. If all that fails, then the error is reported to the RML, which reports to the errmgr for instructions

* obviously from the above, multiple OOB components (e.g., TCP and UD) can be active in parallel

* the matching code has been moved to the RML (and out of the OOB/TCP component) so it is independent of transport

* routing is done by the individual OOB modules (as opposed to the RML). Thus, both routed and non-routed transports can simultaneously be active

* all blocking send/recv APIs have been removed. Everything operates asynchronously.


KNOWN LIMITATIONS:

* although provision is made for component failover as described above, the code for doing so has not been fully implemented yet. At the moment, if all connections for a given peer fail, the errmgr is notified of a "lost connection", which by default results in termination of the job if it was a lifeline

* the IPv6 code is present and compiles, but is not complete. Since the current IPv6 support in the OOB doesn't work anyway, I don't consider this a blocker

* routing is performed at the individual module level, yet the active routed component is selected on a global basis. We probably should update that to reflect that different transports may need/choose to route in different ways

* obviously, not every error path has been tested nor necessarily covered

* determining abnormal termination is more challenging than in the old code as we now potentially have multiple ways of connecting to a process. Ideally, we would declare "connection failed" when *all* transports can no longer reach the process, but that requires some additional (possibly complex) code. For now, the code replicates the old behavior only somewhat modified - i.e., if a module sees its connection fail, it checks to see if it is a lifeline. If so, it notifies the errmgr that the lifeline is lost - otherwise, it notifies the errmgr that a non-lifeline connection was lost.

* reachability is determined solely on the basis of a shared subnet address/mask - more sophisticated algorithms (e.g., the one used in the tcp btl) are required to handle routing via gateways

* the RML needs to assign sequence numbers to each message on a per-peer basis. The receiving RML will then deliver messages in order, thus preventing out-of-order messaging in the case where messages travel across different transports or a message needs to be redirected/resent due to failure of a NIC

This commit was SVN r29058.
2013-08-22 16:37:40 +00:00
Nathan Hjelm
c041156f60 Update ORTE frameworks to use the MCA framework system.
This commit was SVN r28240.
2013-03-27 21:14:43 +00:00
Nathan Hjelm
cf377db823 MCA/base: Add new MCA variable system
Features:
 - Support for an override parameter file (openmpi-mca-param-override.conf).
   Variable values in this file can not be overridden by any file or environment
   value.
 - Support for boolean, unsigned, and unsigned long long variables.
 - Support for true/false values.
 - Support for enumerations on integer variables.
 - Support for MPIT scope, verbosity, and binding.
 - Support for command line source.
 - Support for setting variable source via the environment using
   OMPI_MCA_SOURCE_<var name>=source (either command or file:filename)
 - Cleaner API.
 - Support for variable groups (equivalent to MPIT categories).

Notes:
 - Variables must be created with a backing store (char **, int *, or bool *)
   that must live at least as long as the variable.
 - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of
   mca_base_var_set_value() to change the value.
 - String values are duplicated when the variable is registered. It is up to
   the caller to free the original value if necessary. The new value will be
   freed by the mca_base_var system and must not be freed by the user.
 - Variables with constant scope may not be settable.
 - Variable groups (and all associated variables) are deregistered when the
   component is closed or the component repository item is freed. This
   prevents a segmentation fault from accessing a variable after its component
   is unloaded.
 - After some discussion we decided we should remove the automatic registration
   of component priority variables. Few component actually made use of this
   feature.
 - The enumerator interface was updated to be general enough to handle
   future uses of the interface.
 - The code to generate ompi_info output has been moved into the MCA variable
   system. See mca_base_var_dump().

opal: update core and components to mca_base_var system
orte: update core and components to mca_base_var system
ompi: update core and components to mca_base_var system

This commit also modifies the rmaps framework. The following variables were
moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode,
rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables.

This commit was SVN r28236.
2013-03-27 21:09:41 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Ralph Castain
cf9796accd Remove the old configure option for disabling full rte support - we now use the OMPI rte framework for such purposes
This commit was SVN r28134.
2013-02-28 01:35:55 +00:00
Ralph Castain
744ed49b2d Begin cleanup of the thread_lock calls in ORTE. We'll ignore the ones in the rml/oob for now as that code block is being rewritten anyway.
This commit was SVN r28053.
2013-02-13 01:53:12 +00:00
Nathan Hjelm
bdedd8b0d3 Per RFC modify the behavior of mca_base_components_close to NOT close the output. Modify frameworks to always close their output and set to -1.
Reasoning: The old behavior was a little confusing. mca_base_components_open does not open an output stream so it is a little unexpected that mca_base_components_close does. To add to this several frameworks (that don't use mca_base_components_close) failed to close their output in the framework close function and others closed their output a second time. This change is an improvement to the symantics of mca_base_components_open/close as they are now symetric in their functionality.

This commit was SVN r27570.
2012-11-06 19:09:26 +00:00
Ralph Castain
32c185f730 Set a priority for output of forwarded IO so it can effectively compete against inbound messages
This commit was SVN r27480.
2012-10-24 23:34:50 +00:00
Ralph Castain
e06c330635 Add the ability to set a backlog limit on forwarded output waiting at mpirun - helps to avoid crashing systems during debug. Note that we default to "unlimited" to maintain current behavior.
This commit was SVN r27479.
2012-10-24 23:21:40 +00:00
Ralph Castain
b2f77bf08f Extend the iof by adding two new components to support map-reduce IO chaining. Add a mapreduce tool for running such applications.
Fix the state machine to support multiple jobs being simultaneously launched as this is not only required for mapreduce, but can happen under comm-spawn applications as well.

This commit was SVN r26380.
2012-05-02 21:00:22 +00:00
Ralph Castain
f3e3704c9e Per request from Brian, enable mapping of stddiag output (output from opal_output calls) to stderr of the local process. This allows you to obtain that output in a local window (for example, when using xterm for each process) instead of having it automatically forwarded to mpirun. Turn this on automatically whenever someone uses the -xterm option, and to be set manually using the orte_map_stddiag_to_stderr mca param.
This commit was SVN r26352.
2012-04-27 14:39:34 +00:00
Ralph Castain
bd8b4f7f1e Sorry for mid-day commit, but I had promised on the call to do this upon my return.
Roll in the ORTE state machine. Remove last traces of opal_sos. Remove UTK epoch code.

Please see the various emails about the state machine change for details. I'll send something out later with more info on the new arch.

This commit was SVN r26242.
2012-04-06 14:23:13 +00:00
Ralph Castain
2091e39bee Record the file descriptor on the read event when building optimized
This commit was SVN r25123.
2011-09-11 18:57:14 +00:00
Wesley Bland
4e7ff0bd5e By popular demand the epoch code is now disabled by default.
To enable the epochs and the resilient orte code, use the configure flag:

--enable-resilient-orte

This will define both:

ORTE_ENABLE_EPOCH
ORTE_RESIL_ORTE

This commit was SVN r25093.
2011-08-26 22:16:14 +00:00
Wesley Bland
84be81df95 Standardize the initialization of the EPOCH's.
Everyone will be starting at MIN anyway (until we implement restart of course)
so there's no reason to set the epoch to INVALID and then immediately reset them
to MIN. This way there's less room to make mistakes later.

This commit was SVN r24829.
2011-06-28 14:20:33 +00:00
Wesley Bland
e1ba09ad51 Add a resilience to ORTE. Allows the runtime to continue after a process (or
ORTED) failure. Note that more work will be necessary to allow the MPI layer to
take advantage of this.

Per RFC:
http://www.open-mpi.org/community/lists/devel/2011/06/9299.php

This commit was SVN r24815.
2011-06-23 20:38:02 +00:00
Ralph Castain
9b48c07599 CM daemons handle their own output
This commit was SVN r24407.
2011-02-16 23:02:23 +00:00
Ralph Castain
9b38525d1e Remove unused include files
This commit was SVN r24394.
2011-02-16 00:32:47 +00:00
Ralph Castain
9ea2b196ce Convert the opal_event framework to use direct function calls instead of hiding functions behind function pointers. Eliminate the opal_object_t abstraction of libevent's event struct so it can be directly passed to the libevent functions.
Note: the ompi_check_libfca.m4 file had to be modified to avoid it stomping on global CPPFLAGS and the like. The file was also relocated to the ompi/config directory as it pertains solely to an ompi-layer component.

Forgive the mid-day configure change, but I know Shiqing is working the windows issues and don't want to cause him unnecessary redo work.

This commit was SVN r23966.
2010-10-28 15:22:46 +00:00
Ralph Castain
86c7365e8e Clean up a few initialization issues - don't think these are impacting the shared memory situation as it didn't fix the problem.
Setup the event API to support multiple bases in preparation for splitting the OMPI and ORTE events. Holding here pending shared memory resolution.

This commit was SVN r23943.
2010-10-26 02:41:42 +00:00
Ralph Castain
fceabb2498 Update libevent to the 2.0 series, currently at 2.0.7rc. We will update to their final release when it becomes available. Currently known errors exist in unused portions of the libevent code. This revision passes the IBM test suite on a Linux machine and on a standalone Mac.
This is a fairly intrusive change, but outside of the moving of opal/event to opal/mca/event, the only changes involved (a) changing all calls to opal_event functions to reflect the new framework instead, and (b) ensuring that all opal_event_t objects are properly constructed since they are now true opal_objects.

Note: Shiqing has just returned from vacation and has not yet had a chance to complete the Windows integration. Thus, this commit almost certainly breaks Windows support on the trunk. However, I want this to have a chance to soak for as long as possible before I become less available a week from today (going to be at a class for 5 days, and thus will only be sparingly available) so we can find and fix any problems.

Biggest change is moving the libevent code from opal/event to a new opal/mca/event framework. This was done to make it much easier to update libevent in the future. New versions can be inserted as a new component and tested in parallel with the current version until validated, then we can remove the earlier version if we so choose. This is a statically built framework ala installdirs, so only one component will build at a time. There is no selection logic - the sole compiled component simply loads its function pointers into the opal_event struct.

I have gone thru the code base and converted all the libevent calls I could find. However, I cannot compile nor test every environment. It is therefore quite likely that errors remain in the system. Please keep an eye open for two things:

1. compile-time errors: these will be obvious as calls to the old functions (e.g., opal_evtimer_new) must be replaced by the new framework APIs (e.g., opal_event.evtimer_new)

2. run-time errors: these will likely show up as segfaults due to missing constructors on opal_event_t objects. It appears that it became a typical practice for people to "init" an opal_event_t by simply using memset to zero it out. This will no longer work - you must either OBJ_NEW or OBJ_CONSTRUCT an opal_event_t. I tried to catch these cases, but may have missed some. Believe me, you'll know when you hit it.

There is also the issue of the new libevent "no recursion" behavior. As I described on a recent email, we will have to discuss this and figure out what, if anything, we need to do.

This commit was SVN r23925.
2010-10-24 18:35:54 +00:00
Abhishek Kulkarni
afbe3e99c6 * Wrap all the direct error-code checks of the form (OMPI_ERR_* == ret) with
(OMPI_ERR_* = OPAL_SOS_GET_ERR_CODE(ret)), since the return value could be a
 SOS-encoded error. The OPAL_SOS_GET_ERR_CODE() takes in a SOS error and returns
 back the native error code.

* Since OPAL_SUCCESS is preserved by SOS, also change all calls of the form
  (OPAL_ERROR == ret) to (OPAL_SUCCESS != ret). We thus avoid having to
  decode 'ret' to get the native error code.

This commit was SVN r23162.
2010-05-17 23:08:56 +00:00
Ralph Castain
6c379fed2e IOF components should not assume they will be selected when queried - thus, they should not perform init functions until after selection. Create init/finalize entry points for that purpose, and have select init the module after it has been selected.
This commit was SVN r22982.
2010-04-16 18:51:27 +00:00
Ralph Castain
eeccf2f15c Some minor changes to support vm's
This commit was SVN r22975.
2010-04-14 01:20:43 +00:00
Ralph Castain
0421a49844 Update the xml support to allow -xml-file foo whereby we redirect all xml formatted output (and ONLY xml formatted output) to a specified file
This commit was SVN r21930.
2009-09-02 18:03:10 +00:00
George Bosilca
0bf381e931 This patch try to solve a issue on Leopard. The supposedly global
variables that are not initialized and are declared in a file that
doesn't export any globally visible function are marked as
non-initialized constants, i.e. uninitialized common symbols. For some
obscure reasons, they get removed from the object files on Mac OS X.

So far I found two solution to this problem. One require the addition
of "-c" to the linker command, the second one (corresponding to this
patch) force them to became a common initialized symbol.

This commit was SVN r21739.
2009-07-28 17:06:16 +00:00
Ralph Castain
55e7365e7a Jeff correctly pointed out that char values > 127 also don't print. Adjust the xml output to handle those too.
Thanks Jeff!

This commit was SVN r21727.
2009-07-22 13:28:27 +00:00
Ralph Castain
43d532cfd3 Minor tweak to xml ouput
This commit was SVN r21713.
2009-07-19 17:45:01 +00:00
Ralph Castain
2f515c8357 Per request of the Eclipse team, further modify the xml output to "escape" all non-printable characters
This commit was SVN r21712.
2009-07-17 22:45:32 +00:00
Ralph Castain
ef20e778b3 Ensure that output ends on an appropriate suffix tag when --tag-output or --xml are selected.
When we read the input buffer, we don't always get a complete printf output - we sometimes end mid stream. We still need to add the suffix and a <CR> to keep the output working right.

This commit was SVN r21706.
2009-07-17 05:02:53 +00:00
George Bosilca
3e971e61f3 The system headers are supposed to be protected by #ifdef and not by #if.
This commit was SVN r21700.
2009-07-16 18:27:33 +00:00