now are able to use the dynamic rules. Moreover, these rules are loaded only once,
and stored at the component level. All communicators are able to use these rules
(not only MPI_COMM_WORLD as until now).
A lot of minor corrections, memory management issues and reduction in the amount
of memory used by the tuned collectives.
This commit was SVN r21825.
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
* add "register" function to mca_base_component_t
* converted coll:basic and paffinity:linux and paffinity:solaris to
use this function
* we'll convert the rest over time (I'll file a ticket once all
this is committed)
* add 32 bytes of "reserved" space to the end of mca_base_component_t
and mca_base_component_data_2_0_0_t to make future upgrades
[slightly] easier
* new mca_base_component_t size: 196 bytes
* new mca_base_component_data_2_0_0_t size: 36 bytes
* MCA base version bumped to v2.0
* '''We now refuse to load components that are not MCA v2.0.x'''
* all MCA frameworks versions bumped to v2.0
* be a little more explicit about version numbers in the MCA base
* add big comment in mca.h about versioning philosophy
This commit was SVN r19073.
The following Trac tickets were found above:
Ticket 1392 --> https://svn.open-mpi.org/trac/ompi/ticket/1392
After much work by Jeff and myself, and quite a lot of discussion, it has become clear that we simply cannot resolve the infinite loops caused by RML-involved subsystems calling orte_output. The original rationale for the change to orte_output has also been reduced by shifting the output of XML-formatted vs human readable messages to an alternative approach.
I have globally replaced the orte_output/ORTE_OUTPUT calls in the code base, as well as the corresponding .h file name. I have test compiled and run this on the various environments within my reach, so hopefully this will prove minimally disruptive.
This commit was SVN r18619.
such, the commit message back to the master SVN repository is fairly
long.
= ORTE Job-Level Output Messages =
Add two new interfaces that should be used for all new code throughout
the ORTE and OMPI layers (we already make the search-and-replace on
the existing ORTE / OMPI layers):
* orte_output(): (and corresponding friends ORTE_OUTPUT,
orte_output_verbose, etc.) This function sends the output directly
to the HNP for processing as part of a job-specific output
channel. It supports all the same outputs as opal_output()
(syslog, file, stdout, stderr), but for stdout/stderr, the output
is sent to the HNP for processing and output. More on this below.
* orte_show_help(): This function is a drop-in-replacement for
opal_show_help(), with two differences in functionality:
1. the rendered text help message output is sent to the HNP for
display (rather than outputting directly into the process' stderr
stream)
1. the HNP detects duplicate help messages and does not display them
(so that you don't see the same error message N times, once from
each of your N MPI processes); instead, it counts "new" instances
of the help message and displays a message every ~5 seconds when
there are new ones ("I got X new copies of the help message...")
opal_show_help and opal_output still exist, but they only output in
the current process. The intent for the new orte_* functions is that
they can apply job-level intelligence to the output. As such, we
recommend that all new ORTE and OMPI code use the new orte_*
functions, not thei opal_* functions.
=== New code ===
For ORTE and OMPI programmers, here's what you need to do differently
in new code:
* Do not include opal/util/show_help.h or opal/util/output.h.
Instead, include orte/util/output.h (this one header file has
declarations for both the orte_output() series of functions and
orte_show_help()).
* Effectively s/opal_output/orte_output/gi throughout your code.
Note that orte_output_open() takes a slightly different argument
list (as a way to pass data to the filtering stream -- see below),
so you if explicitly call opal_output_open(), you'll need to
slightly adapt to the new signature of orte_output_open().
* Literally s/opal_show_help/orte_show_help/. The function signature
is identical.
=== Notes ===
* orte_output'ing to stream 0 will do similar to what
opal_output'ing did, so leaving a hard-coded "0" as the first
argument is safe.
* For systems that do not use ORTE's RML or the HNP, the effect of
orte_output_* and orte_show_help will be identical to their opal
counterparts (the additional information passed to
orte_output_open() will be lost!). Indeed, the orte_* functions
simply become trivial wrappers to their opal_* counterparts. Note
that we have not tested this; the code is simple but it is quite
possible that we mucked something up.
= Filter Framework =
Messages sent view the new orte_* functions described above and
messages output via the IOF on the HNP will now optionally be passed
through a new "filter" framework before being output to
stdout/stderr. The "filter" OPAL MCA framework is intended to allow
preprocessing to messages before they are sent to their final
destinations. The first component that was written in the filter
framework was to create an XML stream, segregating all the messages
into different XML tags, etc. This will allow 3rd party tools to read
the stdout/stderr from the HNP and be able to know exactly what each
text message is (e.g., a help message, another OMPI infrastructure
message, stdout from the user process, stderr from the user process,
etc.).
Filtering is not active by default. Filter components must be
specifically requested, such as:
{{{
$ mpirun --mca filter xml ...
}}}
There can only be one filter component active.
= New MCA Parameters =
The new functionality described above introduces two new MCA
parameters:
* '''orte_base_help_aggregate''': Defaults to 1 (true), meaning that
help messages will be aggregated, as described above. If set to 0,
all help messages will be displayed, even if they are duplicates
(i.e., the original behavior).
* '''orte_base_show_output_recursions''': An MCA parameter to help
debug one of the known issues, described below. It is likely that
this MCA parameter will disappear before v1.3 final.
= Known Issues =
* The XML filter component is not complete. The current output from
this component is preliminary and not real XML. A bit more work
needs to be done to configure.m4 search for an appropriate XML
library/link it in/use it at run time.
* There are possible recursion loops in the orte_output() and
orte_show_help() functions -- e.g., if RML send calls orte_output()
or orte_show_help(). We have some ideas how to fix these, but
figured that it was ok to commit before feature freeze with known
issues. The code currently contains sub-optimal workarounds so
that this will not be a problem, but it would be good to actually
solve the problem rather than have hackish workarounds before v1.3 final.
This commit was SVN r18434.
used at nce (up to one unique collective module per collective function).
Matches r15795:15921 of the tmp/bwb-coll-select branch
This commit was SVN r15924.
The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
r15795
r15921
switching:
0 0
/ \ \ / \ \
1 \ \ --> 4 \ \
/ \ \ / \ \
3 2 \ 3 2 \
4 1
(duh). The first form is the bmtree suitable for bcast, but the latter is better for reduce.
Updating default decision function accordingly.
This commit was SVN r15422.
- Removing "small" message size limit because it really does not relate to the eager size
accross the board.
Now, the leaf nodes in generalized reduce will use blocking send (DEFAULT/ORIGINAL BEHAVIOR)
either when the maximum number of outstanding requests is 0 or
when the total number of segments is less than the maximum number of outstanding requests.
Otherwise, it will send messages using non-blocking synchronized send operation.
This commit was SVN r14572.
This "feature" is disabled by default and it should not affect the current performance.
In case when the message size is large and segment size is smaller than eager size for particular interface,
the leaf nodes in generalized reduce function can overflood parent nodes by sending all segments without
any synchronization. This can cause the parent to have HIGH number of unexpected messages (think 16MB
message with 1KB segments for example). In case of binomial algorithm root node always has at least one
child which is leaf, so this can potentially affect the root's performance significantly [Especially in
large communicators where root may have quite a few children (binomial tree for example)].
When the segment size is bigger than the eager size, rendezvous protocol ensures that this does
not happen so it is not necessary.
Originally, the problem was exposed in "infinite" bucket allocator clean up time for "small" segment sizes
(which may explain some "deadlocks" on Thunderbird tests).
To prevent this, we allow user to specify mca parameter "--mca coll_tuned_reduce_algorithm_max_requests NUM"
this limits number of outstanding messages from a leaf node in generalized reduce to the parent to NUM.
Messages are sent as non-blocking synchrnous messages, so syncronization happens at "wait" time.
The synchronization actually improved performance of pipeline and binomial algorithm for large message sizes
with 1KB segments over MX, but I need to test it some more to make sure it is consistent.
Since there is no easy way to find out what is "the eager" size for particular btl, I set the limit to 4000B.
If message/individual segment size is greater than 4000B - we will not use this feature. This variable may
or may not be exposed as mca parameter later...
I did not have any problems running it and both "default" and "synchronous" tests passed Intel Reduce* tests
up to 80 processes (over MX).
This commit was SVN r14518.
- fixing line lengths and some of the comments
- possible bug fix (but I do not think we exposed it in any tests so far)
temporary buffers were allocated as multiples of extent instead of
true_extent + (count -1) * extent.
Everything is still passing Intel tests over tcp and btl mx up to 64 nodes.
This commit was SVN r13956.
Implementation passed intel: MPI_Reduce_c , MPI_Reduce_loc_c, and MPI_Reduce_user_c tests
over TCP, BTL MX, and MTL MX, as well as, mpi_test_suite Reduce tests (up to 64 nodes).
The algorithm is still not activated by decision function (will be in the near future).
This commit was SVN r13657.
- consistent arguments checking (not allowing to select an algorithm which
is not available)
- consistent way of computing the segcount (number of datatypes by segment).
- small cleanups.
- more informative debugging messages.
This commit was SVN r12545.
the default decision functions (for broadcast, reduce and barrier) are based on a
high performance network (not TCP). It should give good performance (really good) for
any network having the following caracteristics: small latency (5 microseconds) and good
bandwidth (more than 1Gb/s).
+ Cleanup of the reduce algorithms, plus 2 new algorithms (binary and binomial). Now most
of the reduce algorithms use a generic tree based function for completing the reduce.
+ Added macros for computing the trees (they are used for bcast and reduce right now).
+ Allow the usage of all 5 topologies.
+ Jelena's implementation of a binary tree that can be used for non commutative operations.
Right now only the tree building function is there, it will get activated soon.
+ Some others minor cleanups.
This commit was SVN r12326.
all platforms. The only exceptions (and I will not deal with them
anytime soon) are on Windows:
- the write functions which require the length to be an int when it's
a size_t on all UNIX variants.
- all iovec manipulation functions where the iov_len is again an int
when it's a size_t on most of the UNIXes.
As these only happens on Windows, so I think we're set for now :)
This commit was SVN r12215.
size and diplacement of data-type. After this patch all data can contain size_t bytes
and the displacements are defined as ptrdiff_t. All of the files I was able to compile
have been modified to match this requirement.
This commit was SVN r12146.
(1) As pointed out by Torsten after Jeff comment that there are 15 collectives yesterday.. nope.. I have 16 but
miss counted them in my ifdefs (I had two #11s). Replaces with enum...
(2) Added a readonly MCA param for how many backend algorithms are available per collective (used by benchmarker/STS)
This allowed me to remove the tuned query internal functions and replace them with ompi_coll_tuned_forced_max_algorithms[COLL].
(3) I was reading the user forced MCA params for the collectives on each comm create (module init) but I then put the
values into a global set of variables (like ompi_coll_tuned_reduce_forced_algorithm).
To fix this and make the code neater:
(a) The component looks up the MCA param indices on Open if dynamic_rules is set via the
ompi_coll_tuned_COLLECTIVE_intra_check_forced_init () call.
(b) Got rid of the ompi_coll_ompi_coll_tuned_COLLECTIVE_forced_algorithm/segmentsize/etc globals with a struct that
is now cached on the module data hung off the communicator. i.e. done right.
(c) On module init if dynamic rules enabled we call a general getvalues routine (in coll_tuned_forced.c) to get the
CURRENT values using the MCA param indices and then put them on the modules data segment.
A shorter version of getvalues exists for barrier which only needs the algorithm choice
This commit was SVN r9663.
- move files out of toplevel include/ and etc/, moving it into the
sub-projects
- rather than including config headers with <project>/include,
have them as <project>
- require all headers to be included with a project prefix, with
the exception of the config headers ({opal,orte,ompi}_config.h
mpi.h, and mpif.h)
This commit was SVN r8985.
be locally completing. for now using synchronous calls until the new functionality is available. then will change
the code to use the new PML send flags.
This commit was SVN r8867.
(apparently we've been doing this in opal and orte, but not in ompi
yet). All public symbols begin with "ompi_coll_tuned_" (not
mca_coll_tuned_) except the component struct. Now this component
passes the illegal symbol report with no hits.
This commit was SVN r8589.
Lots of misc fixes: printfs->opal_output, handles fanin/out correctly for forced ops
unused vars, correct calculations on meaning of 'msgsize' for decision functions
(varies depending on algorithm), etc
This commit was SVN r8113.
go through the dynamic decision rule interface.
(forced algorithms are set with MCA params)
fixed some silly verbose output with wrong func name in it etc
updates to fixed dec rules.
This commit was SVN r7940.
