ports/openmpi
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Nathan Hjelm
ab0a005c95 mpi/cxx: fix warnings 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-10-12 11:30:36 -06:00
Nathan Hjelm
5b40fd267f Merge pull request #2204 from hjelmn/arm64 
asm/arm64: ensure instruction ordering on timer
 2016-10-12 11:22:28 -06:00
Nathan Hjelm
e8ef503bee osc/rdma: fix warnings 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-10-12 10:17:25 -06:00
Ralph Castain
fca1556787 Some compilers apparently complain about this, so modify the typedef statements 2016-10-12 08:44:03 -07:00
Nathan Hjelm
9a50ce6364 asm/arm64: ensure instruction ordering on timer 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-10-12 09:25:21 -06:00
Ralph Castain
b11c9574d4 Remove debug and update copyright 2016-10-11 23:28:16 -07:00
Ralph Castain
a2326e3ba0 Update the scaling test to properly use orterun for orte-dvm tests, and extend by adding params for async mpi init/finalize 2016-10-11 23:24:52 -07:00
Gilles Gouaillardet
974dd64293 ompi/errhandler: remove useless include file 
and avoid #includ'ing stuff that breaks C++ compilers
 2016-10-12 14:49:31 +09:00
Ralph Castain
8f05beb1ec Sync pmix/master@cb53105 2016-10-11 20:54:59 -07:00
rhc54
ad156e3e91 Merge pull request #2207 from rhc54/topic/pmixupdate 
Update PMIx support to latest PMIx master
 2016-10-11 18:57:11 -05:00
rhc54
ee9f33f08c Merge pull request #2146 from rhc54/topic/rml2 
Bring the RML modifications across
 2016-10-11 18:54:59 -05:00
Jeff Squyres
bcbf0bc4f9 usnic: s/OMPI/OPAL/ 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-10-11 16:43:35 -07:00
Ralph Castain
a2919174d0 Bring the RML modifications across. This is the first step in a revamp of the ORTE messaging subsystem to support fabric-based communications during launch and wireup phases. When completed, the grpcomm and plm frameworks will each have their own "conduit" for communication - each conduit corresponds to a particular RML messaging transport. This can be the active OOB-based component, or a provider from within the RML/OFI component. Messages sent down the conduit will flow across the associated transport. 
Multiple conduits can exist at the same time, and can even point to the same base transport. Each conduit can have its own characteristics (e.g., flow control) based on the info keys provided to the "open_conduit" call. For ease during the transition period, the "legacy" RML interfaces remain as wrappers over the new conduit-based APIs using a default conduit opened during orte_init - this default conduit is tied to the OOB framework so that current behaviors are preserved. Once the transition has been completed, a one-time cleanup will be done to update all RML calls to the new APIs and the "legacy" interfaces will be deleted.

While we are at it: Remove oob/usock component to eliminate the TMPDIR length problem - get all working, including oob_stress
 2016-10-11 16:01:02 -07:00
Ralph Castain
6ce4b6d098 Eliminate -Wall from being hardcoded 2016-10-11 12:50:31 -07:00
Ralph Castain
1859b03416 Enable PMIx shared memory support by default 2016-10-11 12:18:01 -07:00
Ralph Castain
1d7d7c201b Update PMIx support to latest PMIx master 2016-10-11 10:17:23 -07:00
Nathan Hjelm
432d79046b Merge pull request #2197 from tkordenbrock/topic/master/osc-rdma.put.use.true_extent 
osc-rdma: fix datatype lower bound errors in ompi_osc_rdma_master()
 2016-10-11 10:42:02 -06:00
Ryan Grant
fd55204791 Merge pull request #2196 from tkordenbrock/topic/master/osc-portals4.put.use.true_extent 
osc-portals4: fix datatype errors in put()
 2016-10-10 08:57:12 -06:00
Valentin Petrov
9747a9ea9b coll/hcoll: ialltoallv interface 2016-10-10 15:09:07 +03:00
Todd Kordenbrock
05f86b5df7 osc-rdma: fix datatype lower bound errors in ompi_osc_rdma_master() 
Instead of ompi_datatype_get_extent(), use ompi_datatype_get_true_extent()
to get the local and remote lower bound.  For derived types like
subarray, true_lb is the correct offset for RDMA operations.
 2016-10-10 06:45:28 -05:00
Todd Kordenbrock
cc863ff9fb osc-portals4: fix datatype errors in put() 
Instead of ompi_datatype_get_extent(), use ompi_datatype_get_true_extent()
to get the origin and target lower bound.  For derived types like
subarray, true_lb is the correct offset for RDMA operations.  Also,
instead of the extent use the size of the datatype.
 2016-10-10 06:45:14 -05:00
rhc54
b703f2e167 Merge pull request #2195 from rhc54/topic/notify 
Implement the backend support for process-generated event notification
 2016-10-08 13:55:19 -05:00
Ralph Castain
5b1484a836 Implement the backend support for process-generated event notification 2016-10-08 09:24:28 -07:00
Gilles Gouaillardet
7cae36f5ab ompi: accept MPI_IN_PLACE in MPI_Ialltoall* 2016-10-08 19:47:25 +09:00
Gilles Gouaillardet
1e0f591811 coll/libnbc: implement support for MPI_IN_PLACE in MPI_Ialltoall* 
Thanks Chris Ward for the report

Many thanks to George for the guidance
 2016-10-08 19:44:01 +09:00
Gilles Gouaillardet
315a622723 ompi: invokes opal_cleanup() if ompi_mpi_finalize() when possible 
As long as it is illegal to call MPI_T_init_thread() after MPI_Finalize(),
be gentle and release as much memory as possible in MPI_Finalize().
opal_cleanup() will be invoked again by the OPAL destructor, but will
do nothing since classes was set to NULL
 2016-10-08 16:58:20 +09:00
Gilles Gouaillardet
0d24fad307 opal: always run opal_class_finalize in the opal_cleanup destructor 
if MPI_Init[_thread]/MPI_Finalize and MPI_T_init_thread/MPI_T_finalize
are balanced, opal_initialized is zero, and hence opal_cleanup destructor
never invokes opal_class_finalize.
if MPI_Init[_thread] nor MPI_T_init_thread have been called, classes is NULL,
so opal_class_finalize does nothing
 2016-10-08 16:58:20 +09:00
Gilles Gouaillardet
b55dd2442a libevent2022: rename _event_strlcpy 2016-10-08 16:58:20 +09:00
Gilles Gouaillardet
c92e9a5406 use the new OPAL_HASH_TABLE_FOREACH convenience macro 2016-10-08 16:58:20 +09:00
Gilles Gouaillardet
23a8f764bd opal: add the OPAL_HASH_TABLE_FOREACH macro 
this is a convenience macro similar to the OPAL_LIST_FOREACH macro,
that can be used to iterate on all the key/value pairs of an opal_hash_table_t
 2016-10-08 16:58:20 +09:00
Gilles Gouaillardet
014f917462 opal: fix comment in OPAL_LIST_FOREACH macro. no code change. 2016-10-08 16:58:19 +09:00
Gilles Gouaillardet
13d49c135f Merge pull request #2193 from ggouaillardet/topic/pmix_misc_plugs_and_fixes 
pmix3x: plugs misc memory leaks and misc fixes
 2016-10-08 16:57:06 +09:00
Gilles Gouaillardet
f1f1fb15eb pmix3x: configury: output major, minor and release version after checking them 
and hence fix the configure output

(back-ported from upstream commit pmix/master@7b7cdda2de)
 2016-10-08 13:01:28 +09:00
Gilles Gouaillardet
f3af799608 pmix3x: misc fixes to get pmix build on Solaris 
- replace MAXHOSTNAMELEN with hardcoded 1024.
  unlike Linux, Solaris #define MAXHOSTNAMELEN in <netdb.h>,
  so use a hard coded value to keep the test simpl
- stdout cannot be assigned on Solaris, so use freopen instead

(back-ported from upstream commit pmix/master@a63f6e53f4)
 2016-10-08 13:01:28 +09:00
Gilles Gouaillardet
5cbfddb8f1 pmix3x: fix misc memory leaks 
(back-ported from upstream commit pmix/master@1eff526929)
 2016-10-08 13:01:28 +09:00
Gilles Gouaillardet
b4e4e4a5f1 pmix3x: enhance pmix_nspace_t destructor 
PMIX_RELEASE all elements stored in the internal and modex hash tables

(back-ported from upstream commit pmix/master@b90674fc52)
 2016-10-08 13:01:27 +09:00
Gilles Gouaillardet
f1dc033767 pmix3x: add the PMIX_HASH_TABLE_FOREACH macro 
this is a convenience macro similar to the PMIX_LIST_FOREACH macro,
that can be used to iterate on all the key/value pairs of a pmix_hash_table_t

(back-ported from upstream commit pmix/master@349971c68c)
 2016-10-08 13:01:27 +09:00
rhc54
73298ad4e2 Merge pull request #2192 from rhc54/topic/showhelp 
Send show_help out thru stderr
 2016-10-07 22:43:44 -05:00
Ralph Castain
51b2bb1d41 Send show_help out thru stderr 2016-10-07 19:23:52 -07:00
Joshua Ladd
4f1b63d9a2 Merge pull request #2188 from jladd-mlnx/topic/oshmem-bump-to-v1.3 
OSHMEM Specification version: Bump to v1.3.
 2016-10-07 07:15:43 -04:00
Gilles Gouaillardet
1ef2ad029f fs: do not build the fs components configured with --disable-io-ompio 2016-10-07 13:15:04 +09:00
Joshua Ladd
fe2b8b7e06 OSHMEM Specification version: Bump to v1.3. 2016-10-06 22:12:07 +03:00
Gilles Gouaillardet
6c6e35bb40 ompi/communicator: silence warnings 2016-10-06 15:03:06 +09:00
Gilles Gouaillardet
b95e243f83 ompi/errhandler: silence warnings 
ISO C forbids mixing object pointer and function pointer
 2016-10-06 13:20:51 +09:00
Gilles Gouaillardet
95e63d7803 cxx bindings: fix support for --disable-mpi-io configure option 
Fixes open-mpi/ompi#2179
 2016-10-06 09:53:59 +09:00
Jeff Squyres
67684be7c9 usnic: fix one last stray fabric_attr->name --> linux_device_name 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-10-04 18:17:38 -07:00
Todd Kordenbrock
54c46ca14e Merge pull request #2156 from tkordenbrock/topic/raccumulate.offset.fix 
osc-portals4: fix offset bug in raccumulate()
 2016-10-04 20:11:54 -05:00
Gilles Gouaillardet
ebb43c59d9 travis: cope with brew upgrade failure 
also try to brew install gcc before brew upgrade gcc
 2016-10-05 09:50:34 +09:00
Gilles Gouaillardet
bc6724567f README: document --disable-io-romio and --disable-io-ompio configure options 2016-10-05 09:14:32 +09:00
Nathan Hjelm
6cdbdceee6 Merge pull request #2064 from hjelmn/cxx_isolation 
mpi/cxx: isolate internal headers from C++ bindings
 2016-10-04 12:54:11 -06:00