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118 Коммитов

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Ralph Castain
b9897267ef Cleanup report-bindings so it always reports the actual binding instead of what was requested. Ensure we don't report twice if it is an MPI process being launched.
This commit was SVN r28057.
2013-02-14 17:24:28 +00:00
Ralph Castain
ca9605773b If sensors are enabled, then the daemons need to have their proc->node field linked to their local node object
This commit was SVN r27991.
2013-01-31 16:38:57 +00:00
Ralph Castain
d1163ebbf2 Ensure we cleanup DFS worker threads during finalize to avoid segfaulting in MCA param cleanup
This commit was SVN r27723.
2012-12-25 21:17:35 +00:00
Nathan Hjelm
bdedd8b0d3 Per RFC modify the behavior of mca_base_components_close to NOT close the output. Modify frameworks to always close their output and set to -1.
Reasoning: The old behavior was a little confusing. mca_base_components_open does not open an output stream so it is a little unexpected that mca_base_components_close does. To add to this several frameworks (that don't use mca_base_components_close) failed to close their output in the framework close function and others closed their output a second time. This change is an improvement to the symantics of mca_base_components_open/close as they are now symetric in their functionality.

This commit was SVN r27570.
2012-11-06 19:09:26 +00:00
Nathan Hjelm
2acd0f83de Revert "Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter".
It appears the problem was not with the command line parser but the rsh plm. I don't know why this problem was not occuring before the command line parser changes but it appears to be resolved now.

This commit was SVN r27527.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-30 19:45:18 +00:00
Ralph Castain
094d6f3143 Add a new "distributed file system" capability to support file access operations across nodes that do not have a network file system attached to them.
Add a set of URI create/parse utilities

This commit was SVN r27483.
2012-10-25 17:15:17 +00:00
Ralph Castain
e6014bf2e1 Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter
This commit was SVN r27477.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-24 18:38:44 +00:00
Nathan Hjelm
d59034e6ef MCA: remove deprecated mca_base_param functions (mca_base_param_register_int, mca_base_param_register_string, mca_base_param_environ_variable). Remove all uses of deprecated functions.
cmr:v1.7

This commit was SVN r27451.
2012-10-17 20:17:37 +00:00
Ralph Castain
30fd9d7abc MPI procs should definitely not be trapping SIGCHLD - only ORTE tools need to do so
This commit was SVN r27166.
2012-08-28 21:39:06 +00:00
Ralph Castain
98580c117b Introduce staged execution. If you don't have adequate resources to run everything without oversubscribing, don't want to oversubscribe, and aren't using MPI, then staged execution lets you (a) run as many procs as there are available resources, and (b) start additional procs as others complete and free up resources. Adds a new mapper as well as a new state machine.
Remove some stale configure.m4's we no longer need.

Optimize the nidmaps a bit by only sending info that has changed each time, instead of sending a complete copy of everything. Makes no difference for the typical MPI job - only impacts things like staged execution where we are sending multiple (possibly many) launch messages.

This commit was SVN r27165.
2012-08-28 21:20:17 +00:00
Ralph Castain
0dfe29b1a6 Roll in the rest of the modex change. Eliminate all non-modex API access of RTE info from the MPI layer - in some cases, the info was already present (either in the ompi_proc_t or in the orte_process_info struct) and no call was necessary. This removes all calls to orte_ess from the MPI layer. Calls to orte_grpcomm remain required.
Update all the orte ess components to remove their associated APIs for retrieving proc data. Update the grpcomm API to reflect transfer of set/get modex info to the db framework.

Note that this doesn't recreate the old GPR. This is strictly a local db storage that may (at some point) obtain any missing data from the local daemon as part of an async methodology. The framework allows us to experiment with such methods without perturbing the default one.

This commit was SVN r26678.
2012-06-27 14:53:55 +00:00
Ralph Castain
e6f3586415 Remove the orte notifier framework, per discussion at the devel meeting and follow-up with Jeff (who took the action item)
This commit was SVN r26637.
2012-06-22 18:09:23 +00:00
Ralph Castain
0a713cd27e Add database framework to ORTE and refactor modex code to utilize it. Create the "hash" db component from the prior modex db code. Leave the other components ignored for now - will activate them later.
Modex is still a blocking operation at this point.

This commit was SVN r26618.
2012-06-19 13:38:42 +00:00
Ralph Castain
96c778656a Improve launch performance on clusters that use dedicated nodes by instructing the orteds to use the same port as the HNP, thus allowing them to "rollup" their initial callback via the routed network. This substantially reduces the HNP bottleneck and the number of ports opened by the HNP.
Restore enable-static-ports option by default - the Cray will have to disable it to get around their library issues, but that's just a warning problem as opposed to blocking the build.

This commit was SVN r26606.
2012-06-15 10:15:07 +00:00
Ralph Castain
269cb2b8d9 Some cleanup to remove calls to opal_progress when running with orte progress threads, and to ensure that all orte-related events are in the orte event base.
This commit was SVN r26591.
2012-06-11 19:59:53 +00:00
Nathan Hjelm
78b8b3cf76 bug fix: actually close ess components
This commit was SVN r26469.
2012-05-22 15:09:18 +00:00
Nathan Hjelm
6eeca66475 add an option to enable static ports. diabled by default
This commit was SVN r26462.
2012-05-21 19:56:15 +00:00
Ralph Castain
70a106fa71 Fix binding on remote nodes - need to pass the binding bitmap!
This commit was SVN r26403.
2012-05-08 03:52:39 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Ralph Castain
9f724db182 Remove duplicate event assignment
This commit was SVN r26360.
2012-04-30 16:06:20 +00:00
Ralph Castain
289f9f41ec From long-term discussions, have the daemons use the node_t and proc_t structs and arrays instead of the pidmap and nidmap arrays. Sets the stage for future work.
This commit was SVN r26359.
2012-04-29 00:10:01 +00:00
Ralph Castain
5d14fa7546 Fix mpi_abort, minimize error output.
This commit was SVN r26266.
2012-04-11 14:37:08 +00:00
Ralph Castain
14d5525fb1 Some minor cleanups. Get singletons working. Cleanup abort handling so it gets properly identified.
This commit was SVN r26261.
2012-04-10 19:08:54 +00:00
Ralph Castain
bd8b4f7f1e Sorry for mid-day commit, but I had promised on the call to do this upon my return.
Roll in the ORTE state machine. Remove last traces of opal_sos. Remove UTK epoch code.

Please see the various emails about the state machine change for details. I'll send something out later with more info on the new arch.

This commit was SVN r26242.
2012-04-06 14:23:13 +00:00
Josh Hursey
4dd9f89a99 Create an MCA parameter (ess_base_stream_buffering) that allows the user to override the system default for buffering of stdout/stderr streams. See 'man setvbuf' for more information.
Note: I am working on a system that buffered all output until the application fishished due to a default of 'fully buffered.' This makes debugging painful. This switch fixed the problem by allowing me to adjust the buffering.

This commit was SVN r26119.
2012-03-08 22:02:28 +00:00
Ralph Castain
9b59d8de6f This is actually a much smaller commit than it appears at first glance - it just touches a lot of files. The --without-rte-support configuration option has never really been implemented completely. The option caused various objects not to be defined and conditionally compiled some base functions, but did nothing to prevent build of the component libraries. Unfortunately, since many of those components use objects covered by the option, it caused builds to break if those components were allowed to build.
Brian dealt with this in the past by creating platform files and using "no-build" to block the components. This was clunky, but acceptable when only one organization was using that option. However, that number has now expanded to at least two more locations.

Accordingly, make --without-rte-support actually work by adding appropriate configury to prevent components from building when they shouldn't. While doing so, remove two frameworks (db and rmcast) that are no longer used as ORCM comes to a close (besides, they belonged in ORCM now anyway). Do some minor cleanups along the way.

This commit was SVN r25497.
2011-11-22 21:24:35 +00:00
George Bosilca
61f273b987 Do not tolerate uninitialized variables.
This commit was SVN r25489.
2011-11-18 10:19:24 +00:00
Ralph Castain
b77552c45d Cleanup some include files, return a silent error in open/select as the complaining component already output a message
This commit was SVN r25416.
2011-11-02 17:42:06 +00:00
Ralph Castain
965b04d1a5 Use the new utilities to get a topology that reflects available cpus
This commit was SVN r25394.
2011-10-29 15:07:36 +00:00
Ralph Castain
b44f8d4b28 Complete implementation of the ess.proc_get_locality API. Up to this point, the API was only capable of telling if the specified proc was sharing a node with you. However, the returned value was capable of telling you much more detailed info - e.g., if the proc shares a socket, a cache, or numa node. We just didn't have the data to provide that detail.
Use hwloc to obtain the cpuset for each process during mpi_init, and share that info in the modex. As it arrives, use a new opal_hwloc_base utility function to parse the value against the local proc's cpuset and determine where they overlap. Cache the value in the pmap object as it may be referenced multiple times.

Thus, the return value from orte_ess.proc_get_locality is a 16-bit bitmask that describes the resources being shared with you. This bitmask can be tested using the macros in opal/mca/paffinity/paffinity.h

Locality is available for all procs, whether launched via mpirun or directly with an external launcher such as slurm or aprun.

This commit was SVN r25331.
2011-10-19 20:18:14 +00:00
Ralph Castain
3c4f04f4d9 Ensure opal_hwloc_topology is NULL after being destroyed
This commit was SVN r25138.
2011-09-13 19:21:10 +00:00
Ralph Castain
92c7372e20 Per the RFC from Jeff, move hwloc from opal/mca/common to its own static framework ala libevent. Have ORTE daemons collect the topology info at startup and, if --enable-hwloc-xml is set, send that info back to the HNP for later use. The HNP only retains unique topology "templates" to reduce memory footprint. Have the daemon include the local topology info in the nidmap buffer sent to each app so the apps don't all hammer the local system to discover it for themselves.
Remove the sysinfo framework as hwloc replaces that functionality.

This commit was SVN r25124.
2011-09-11 19:02:24 +00:00
Wesley Bland
4e7ff0bd5e By popular demand the epoch code is now disabled by default.
To enable the epochs and the resilient orte code, use the configure flag:

--enable-resilient-orte

This will define both:

ORTE_ENABLE_EPOCH
ORTE_RESIL_ORTE

This commit was SVN r25093.
2011-08-26 22:16:14 +00:00
Ralph Castain
1c08a4006c Refactor some code to remove a few API handles from errmgr. Reviewed/tested by Wes.
This commit was SVN r25064.
2011-08-18 16:24:45 +00:00
Wesley Bland
5fde3e0e00 Move the resilient orte errmgr code into a seperate errmgr for now while it's
still unstable. Reverted errmgr modules back to the original errmgr (with the
updates since the resilient code was brought into the trunk).

This commit was SVN r24958.
2011-07-28 21:24:34 +00:00
Ralph Castain
6c879f87fb Add a new param "orte_remote_tmpdir_base" for those situations where the compute nodes require a different session directory head than the head node.
This commit was SVN r24956.
2011-07-27 19:37:17 +00:00
Ralph Castain
361bcef253 Close multicast before rml
This commit was SVN r24925.
2011-07-23 20:19:15 +00:00
Ralph Castain
1ee7c39982 Fix some major bit-rot on scalable launch. If static ports are provided, then daemons can connect back to the HNP via the routed connection tree instead of doing so directly. In order to do that at scale, the node list must be passed as a regular expression - otherwise, the orted command line gets too long.
Over the course of time, usage of static ports got corrupted in several places, the "parent" info got incorrectly reset, etc. So correct all that and get the regex-based wireup going again.

Also, don't pass node lists if static ports aren't enabled - they are of no value to the orted and just create the possibility of overly-long cmd lines.

This commit was SVN r24860.
2011-07-07 18:54:30 +00:00
Wesley Bland
0628963506 Fix a return code when a process isn't found.
This commit was SVN r24845.
2011-06-30 15:22:54 +00:00
Brian Barrett
e52fef28ca Do something rational for the disable full support case
This commit was SVN r24844.
2011-06-30 14:48:19 +00:00
Wesley Bland
e1ba09ad51 Add a resilience to ORTE. Allows the runtime to continue after a process (or
ORTED) failure. Note that more work will be necessary to allow the MPI layer to
take advantage of this.

Per RFC:
http://www.open-mpi.org/community/lists/devel/2011/06/9299.php

This commit was SVN r24815.
2011-06-23 20:38:02 +00:00
Josh Hursey
0eb3b3b7b0 Fix missing functionality in MPI_Abort so that the group of peers defined by the communicator that should be aborted with this process are requested from the runtime before the local process exits.
Per RFC:
  http://www.open-mpi.org/community/lists/devel/2011/06/9335.php

This commit was SVN r24775.
2011-06-15 13:10:13 +00:00
Ralph Castain
9b38525d1e Remove unused include files
This commit was SVN r24394.
2011-02-16 00:32:47 +00:00
Ralph Castain
9ea2b196ce Convert the opal_event framework to use direct function calls instead of hiding functions behind function pointers. Eliminate the opal_object_t abstraction of libevent's event struct so it can be directly passed to the libevent functions.
Note: the ompi_check_libfca.m4 file had to be modified to avoid it stomping on global CPPFLAGS and the like. The file was also relocated to the ompi/config directory as it pertains solely to an ompi-layer component.

Forgive the mid-day configure change, but I know Shiqing is working the windows issues and don't want to cause him unnecessary redo work.

This commit was SVN r23966.
2010-10-28 15:22:46 +00:00
Ralph Castain
86c7365e8e Clean up a few initialization issues - don't think these are impacting the shared memory situation as it didn't fix the problem.
Setup the event API to support multiple bases in preparation for splitting the OMPI and ORTE events. Holding here pending shared memory resolution.

This commit was SVN r23943.
2010-10-26 02:41:42 +00:00
Ralph Castain
fceabb2498 Update libevent to the 2.0 series, currently at 2.0.7rc. We will update to their final release when it becomes available. Currently known errors exist in unused portions of the libevent code. This revision passes the IBM test suite on a Linux machine and on a standalone Mac.
This is a fairly intrusive change, but outside of the moving of opal/event to opal/mca/event, the only changes involved (a) changing all calls to opal_event functions to reflect the new framework instead, and (b) ensuring that all opal_event_t objects are properly constructed since they are now true opal_objects.

Note: Shiqing has just returned from vacation and has not yet had a chance to complete the Windows integration. Thus, this commit almost certainly breaks Windows support on the trunk. However, I want this to have a chance to soak for as long as possible before I become less available a week from today (going to be at a class for 5 days, and thus will only be sparingly available) so we can find and fix any problems.

Biggest change is moving the libevent code from opal/event to a new opal/mca/event framework. This was done to make it much easier to update libevent in the future. New versions can be inserted as a new component and tested in parallel with the current version until validated, then we can remove the earlier version if we so choose. This is a statically built framework ala installdirs, so only one component will build at a time. There is no selection logic - the sole compiled component simply loads its function pointers into the opal_event struct.

I have gone thru the code base and converted all the libevent calls I could find. However, I cannot compile nor test every environment. It is therefore quite likely that errors remain in the system. Please keep an eye open for two things:

1. compile-time errors: these will be obvious as calls to the old functions (e.g., opal_evtimer_new) must be replaced by the new framework APIs (e.g., opal_event.evtimer_new)

2. run-time errors: these will likely show up as segfaults due to missing constructors on opal_event_t objects. It appears that it became a typical practice for people to "init" an opal_event_t by simply using memset to zero it out. This will no longer work - you must either OBJ_NEW or OBJ_CONSTRUCT an opal_event_t. I tried to catch these cases, but may have missed some. Believe me, you'll know when you hit it.

There is also the issue of the new libevent "no recursion" behavior. As I described on a recent email, we will have to discuss this and figure out what, if anything, we need to do.

This commit was SVN r23925.
2010-10-24 18:35:54 +00:00
Ralph Castain
12cd07c9a9 Start reducing our dependency on the event library by removing at least one instance where we use it to redirect the program counter. Rolf reported occasional hangs of mpirun in very specific circumstances after all daemons were done. A review of MTT results indicates this may have been happening more generally in a small fraction of cases.
The problem was tracked to use of the grpcomm.onesided_barrier to control daemon/mpirun termination. This relied on messaging -and- required that the program counter jump from the errmgr back to grpcomm. On rare occasions, this jump did not occur, causing mpirun to hang.

This patch looks more invasive than it is - most of the affected files simply had one or two lines removed. The essence of the change is:

* pulled the job_complete and quit routines out of orterun and orted_main and put them in a common place

* modified the errmgr to directly call the new routines when termination is detected

* removed the grpcomm.onesided_barrier and its associated RML tag

* add a new "num_routes" API to the routed framework that reports back the number of dependent routes. When route_lost is called, the daemon's list of "children" is checked and adjusted if that route went to a "leaf" in the routing tree

* use connection termination between daemons to track rollup of the daemon tree. Daemons and HNP now terminate once num_routes returns zero

Also picked up in this commit is the addition of a new bool flag to the app_context struct, and increasing the job_control field from 8 to 16 bits. Both trivial.

This commit was SVN r23429.
2010-07-17 21:03:27 +00:00
Abhishek Kulkarni
afbe3e99c6 * Wrap all the direct error-code checks of the form (OMPI_ERR_* == ret) with
(OMPI_ERR_* = OPAL_SOS_GET_ERR_CODE(ret)), since the return value could be a
 SOS-encoded error. The OPAL_SOS_GET_ERR_CODE() takes in a SOS error and returns
 back the native error code.

* Since OPAL_SUCCESS is preserved by SOS, also change all calls of the form
  (OPAL_ERROR == ret) to (OPAL_SUCCESS != ret). We thus avoid having to
  decode 'ret' to get the native error code.

This commit was SVN r23162.
2010-05-17 23:08:56 +00:00
Ralph Castain
4bd25f587c Begin handling the case of lost connections by having the OOB report it to the errmgr instead of the routed framework. Add an "app" component to t
he errmgr framework so that it can decide how to respond - which for now at least is just to check for lifeline and abort if so.

Add a new error constant to indicate that the error is "unrecoverable" so the oob can know it needs to abort.

This commit was SVN r23112.
2010-05-11 00:34:12 +00:00
Ralph Castain
2ff1ae13e1 Create a new "heartbeat" module in the sensor framework and move the plm_base heartbeat code there. Add new proc and job states for heartbeat_failed. Remove the "heartbeat" cmd line option for orted as this is now done automatically if the --enable-heartbeat configure option is set.
This commit was SVN r23102.
2010-05-05 00:48:43 +00:00