1
1

5221 Коммитов

Автор SHA1 Сообщение Дата
Howard Pritchard
ade280eb7c
Merge pull request #3292 from markalle/pr/ibv_reg_mr__fork
IB fork
2018-03-21 09:39:08 -06:00
Boris Karasev
85ce76fa36
Merge pull request #4926 from karasevb/pmix_dstore_enable
pmix: dstore returned for direct modex
2018-03-21 14:24:51 +07:00
Boris Karasev
3796307a57 timings: added new timing points
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-03-21 05:16:25 +02:00
Stanislav Kirillov
c2bfca19ba
fix ipv6 missing copypaste
Signed-off-by: Stanislav Kirillov <staskirillof@yandex.ru>
2018-03-21 02:25:04 +03:00
Stanislav Kirillov
86061fbf8d
fixed ipv6 OOB connection problems
Signed-off-by: Stanislav Kirillov <staskirillof@yandex.ru>
2018-03-20 16:07:53 +00:00
Boris Karasev
dca3dd2ea4 pmix: dstore returned for direct modex
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-03-20 04:56:48 +02:00
Jeff Squyres
cc4bb433bc mpool/memkind: fix typo in partition page sizes
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-03-19 16:33:08 -05:00
Boris Karasev
36a0c6a794 pmix: fixed the direct modex request
This commit fixes the case when local client asks for the key from the
process on the remote node. The local server don't have commit count for
remote ranks, it is maintained by another PMIx server, so commit count
should be ignored for remote requests.

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-03-19 11:51:03 +02:00
Jeff Squyres
2713a24009 opal_datatype_module.c: reset opal_cuda_verbose
999de137ce6 accidentally reset opal_cuda_verbose's default value.
This commit puts it back.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-03-13 10:10:15 -07:00
George Bosilca
999de137ce
Fix the datatype debug.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-03-08 03:40:08 +09:00
George Bosilca
7848035195
Update the loop stats.
The loop should be updated on each internal iteration.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-03-08 03:18:39 +09:00
Jordan Cherry
2f0e8153a5
Merge pull request #4247 from jocherry/btlTcpLinksBugFix
tcp btl: Fix multiple-link connection establishment.
2018-03-07 08:40:37 -08:00
Ralph Castain
7241043809 Modify the internal logic for resolve nodes/peers
The current code path for PMIx_Resolve_peers and PMIx_Resolve_nodes executes a threadshift in the preg components themselves. This is done to ensure thread safety when called from the user level. However, it causes thread-stall when someone attempts to call the regex functions from _inside_ the PMIx code base should the call occur from within an event.

Accordingly, move the threadshift to the client-level functions and make the preg components just execute their algorithms. Create a new pnet/test component to verify that the prge code can be safely accessed - set that component to be selected only when the user directly specifies it. The new component will be used to validate various logical extensions during development, and can then be discarded.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit 456ac7f7af3d9ba09888e3c899eb001daaa24aef)
2018-03-02 02:00:31 -08:00
Ralph Castain
17c40f4cea Implement support for proctable queries
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-03-02 02:00:31 -08:00
Ralph Castain
0434b615b5 Update ORTE to support PMIx v3
This is a point-in-time update that includes support for several new PMIx features, mostly focused on debuggers and "instant on":

* initial prototype support for PMIx-based debuggers. For the moment, this is restricted to using the DVM. Supports direct launch of apps under debugger control, and indirect launch using prun as the intermediate launcher. Includes ability for debuggers to control the environment of both the launcher and the spawned app procs. Work continues on completing support for indirect launch

* IO forwarding for tools. Output of apps launched under tool control is directed to the tool and output there - includes support for XML formatting and output to files. Stdin can be forwarded from the tool to apps, but this hasn't been implemented in ORTE yet.

* Fabric integration for "instant on". Enable collection of network "blobs" to be delivered to network libraries on compute nodes prior to local proc spawn. Infrastructure is in place - implementation will come later.

* Harvesting and forwarding of envars. Enable network plugins to harvest envars and include them in the launch msg for setting the environment prior to local proc spawn. Currently, only OmniPath is supported. PMIx MCA params control which envars are included, and also allows envars to be excluded.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-03-02 02:00:31 -08:00
Gilles Gouaillardet
9fedf2836e btl/vader: handle unexpected short read/write in process_vm_{read,write}v
Important note :

According to the man page
"On success, process_vm_readv() returns the number of bytes read and
process_vm_writev() returns the number of bytes written.  This return
value may be less than the total number of requested bytes, if a
partial read/write occurred.  (Partial transfers apply at the
granularity of iovec elements.  These system calls won't perform a
partial transfer that splits a single iovec element.)"

So since we use a single iovec element, the returned size should either
be 0 or size, and the do loop should not be needed here.
We tried on various Linux kernels with size > 2 GB, and surprisingly,
the returned value is always 0x7ffff000 (fwiw, it happens to be the size
of the larger number of pages that fits a signed 32 bits integer).
We do not know whether this is a bug from the kernel, the libc or even
the man page, but for the time being, we do as is process_vm_readv() could
return any value.

Thanks Heiko Bauke for the bug report.

Refs. open-mpi/ompi#4829

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-03-02 13:20:46 +09:00
Nathan Hjelm
5ed2fc2d48 mca/base: add support for additional variable types
This commit adds long, int32_t, uint32_t, int64_t, and uint64_t as
possible MCA variable types.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-03-01 20:42:27 -07:00
Jordan Cherry
d7e7e3acb7 tcp btl: Fix multiple-link connection establishment.
Fix case where the btl_tcp_links MCA parameter is used to create multiple TCP connections between peers.
    Three issues were resulting in hangs during large message transfer:
      * The 2nd..btl_tcp_link connections were dropped during establishment because the per-process
        address check was binary, rather than a count
      * The accept handler would not skip a btl module that was already in use, resulting in all
        connections for a given address being vectored to a single btl
      * Multiple addresses in the same subnet caused connections to be
        stalled, as the receiver would always use the same (first) address
        found.  Binding the outgoing connection solves this issue
     *  Lastly fix race condition created by connections being started at the exact same time
        by accpeting connections not in the closed state, allowing endpoint_accept to resolve
        dispute

    Signed-off-by: Jordan Cherry <cherryj@amazon.com>
2018-02-27 16:36:44 +00:00
Nathan Hjelm
5380d7cce5 mpool/hugepage: add missing header
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-02-26 13:35:56 -07:00
Nathan Hjelm
38d9b10db8 rcache/base: update VMA tree to use opal_interval_tree_t
This commit replaces the current VMA tree implementation with one that
uses the new opal_interval_tree_t class. Since the VMA tree lock is no
longer used this commit also updates rcache/grdma and btl/vader to
take better care when searching for existing registrations.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-02-26 13:35:56 -07:00
Nathan Hjelm
7163fc98a0 opal/class: add a new class: opal_interval_tree_t
This commit adds a new class to opal: opal_interval_tree_t. This is a
thread-safe impelementation of a 1-dimensional interval tree. The data
structure is intended to provide a faster implementation of the
registration cache VMA tree.

The thread safety is provided by a relativistic red-black tree
implementation. This structure provides support for multiple-reader,
and single writer. There is one caveat, an item may appear in the tree
twice while the tree is being updated. Care needs to be taken to avoid
issues associated with this "feature". I don't anticipate a problem
with the current VMA tree usage.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-02-26 13:35:56 -07:00
Ralph Castain
60e6440603 Sync to PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-02-19 09:20:13 -08:00
Jeff Squyres
b452991ad8 btl/usnic: missed a preprocessor check in d36648b
Missed updating one instance of `==` to `>=` in d36648b.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-02-19 07:03:05 -08:00
Jeff Squyres
d36648b547 btl/usnic: update BTL_VERSION handling
Follow-on to 8097d09858: now that BTL_VERSION is defined in btl.h, be
a little smarter about whether we define it or not.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-02-16 13:20:36 -08:00
Ralph Castain
8097d09858 Silence usnic warnings - BTL version has changed
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-02-16 10:00:18 -08:00
Nathan Hjelm
9aa21f4467
Merge pull request #4796 from hjelmn/btl_v3.1
opal/btl: add support for flushing RDMA/atomic operations
2018-02-15 12:44:18 -07:00
Nathan Hjelm
072a6a4850 opal/btl: add support for flushing RDMA/atomic operations
This commit adds a new optional function to the BTL module:
btl_flush. This function takes an optional BTL endpoint. When called
this function completes all outstanding RDMA and atomic operations
started prior to the call to btl_flush.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-02-13 12:49:51 -07:00
Gilles Gouaillardet
9121eb4ff9 opal/lifo: fix a ABA problem in opal_lifo_pop_atomic
that was introduced in open-mpi/ompi@11bb8b09a0

Fixes open-mpi/ompi#4784

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-02-09 14:48:54 +09:00
Ralph Castain
1a7dfd7d54 Sync to PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-02-07 12:16:51 -08:00
Ralph Castain
9fe8153d38 Sync to IOF branch and continue fix of request for job info from unknown nspace
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit 02400d30d79ce3c7e7e28f9a08f7062a5b6f4c51)
2018-02-03 19:56:35 -08:00
Howard Pritchard
1adf0873f7
Merge pull request #4766 from hppritcha/topic/squash_grdma_comp_warning
rcache/grdma: squash a compiler warning
2018-02-02 18:58:32 -07:00
Gilles Gouaillardet
43700faba1 pmix/ext3x: remove autogenerated ext3x.h header file
This header file was meant to be autogenerated, and for
some reasons, was never removed from the repository.
Update .gitignore as well

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-01-31 23:45:42 +09:00
Gilles Gouaillardet
8209fca842 pmix/ext3x: bring external component up-to-date with the embedded pmix3x
add the callback prototype for the upcoming PMIx_IOF_push() API

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-01-31 13:35:34 +09:00
Gilles Gouaillardet
0481277e93 pmix/ext3x: bring external component up-to-date with the embedded pmix3x
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-01-31 13:33:33 +09:00
Nathan Hjelm
bb212e0c94
Merge pull request #4767 from ggouaillardet/topic/vader_backing_file
btl/vader: make the backing file job specific
2018-01-30 21:27:02 -07:00
Gilles Gouaillardet
0285c63348 pmix/ext3x: generate component source when only static libraries are built
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-01-31 13:21:14 +09:00
Gilles Gouaillardet
611d7c2d27 btl/vader: make the backing file job specific
Since open-mpi/ompi@47fd2313ab
the backing file is now in /dev/shm by default. As a consequence,
the backing file name has to include the jobid so more than one job
can run at a time.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-01-30 16:52:51 +09:00
Howard Pritchard
c3cac6731f rcache/grdma: squash a compiler warning
tired of seeing this compiler warning

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-01-29 11:50:01 -07:00
Ralph Castain
a17df810ed Sync with PMIx iof rfc
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-25 10:51:38 -08:00
Ralph Castain
e9cd7fd7e6 Update orte
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-25 08:53:43 -08:00
Ralph Castain
9fb80bd239 Update the opal/pmix base framework elements
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-25 08:37:52 -08:00
Ralph Castain
187352eb3d Update the PMIx external components
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-25 08:35:57 -08:00
Ralph Castain
a5679ef000 Update the PMIx 3.x component
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-25 08:34:44 -08:00
Yossi Itigin
7cee60346e opal_progress: check timer only once per 8 calls
Reading the system clock on every call to opal_progress() is an
expensive operation on most architectures, and it can negatively affect
the performance, for example of message rate benchmarks.

We change opal_progress() to read the clock once per 8 calls, unless
there are active users of the event mechanism.

Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-01-16 19:18:53 +02:00
Ralph Castain
6216225bda Ensure cleanup of registered files/dirs
Resolve a race condition between registering for a file to be removed upon termination and actual creation of that file by providing attributes that identify whether the path is a file or directory. This removes the need for PMIx to detect the difference.

Refs #4686

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-11 11:05:30 -08:00
Ralph Castain
6dacf40a8c Ensure the epilog gets executed in PMIx server
If we abnormally terminate, then we still want any cleanups to be
executed.

Remove debug

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-10 18:28:05 -08:00
Gilles Gouaillardet
1a17cb3b1c opal/datatype: add opal_datatype_is_monotonic()
return true if the datatype has non-negative displacements and
monotonically nondecreasing, and false otherwise.

Thanks George for the guidance.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-01-09 18:05:14 +09:00
Ralph Castain
d620070c77 Correct the comment in the default MCA param template - we do not support a param called "component_path". The correct syntax is "mca_base_component_path"
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-05 08:46:44 -08:00
Nathan Hjelm
8b8aae372d opal/asm: add atomic min/max convenience functions
This commit adds atomic functions for min/max.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-01-02 08:38:36 -07:00
Gilles Gouaillardet
125169f057 opal/bitmap: fix opal_bitmap_set_bit()
Correctly reallocate the bitmap when needed

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-12-27 14:56:43 +09:00