ports/openmpi
ports/openmpi
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Автор SHA1 Сообщение Дата
Rolf vandeVaart
cb84a85d17 Build always and fix return value 2015-08-05 17:23:55 -04:00
Edgar Gabriel
16d4171f6b the individual component should call internal ompio functions directly. The reason is that otherwise 
the redirection to the ompi_file_t structure (and back to the ompio internal structure) is ambiguise and wrong
for the shared file pointer scenario.
 2015-08-05 14:31:11 -05:00
Edgar Gabriel
02a4eb2f13 add the ompi_file_t pointer correctly on the ompio file handle for the sm and individual component. 2015-08-05 14:28:27 -05:00
Jeff Squyres
a36d7e6026 treematch: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
Jeff Squyres
a0ebbee6ef libnbc: __FUNCTION__ -> __func__ fixes 2015-08-05 05:27:23 -07:00
Gilles Gouaillardet
3d1780f1a2 sharedfp: set f_fh when opening a shared file 2015-08-05 15:07:21 +09:00
Howard Pritchard
36d7855280 Merge pull request #763 from nrgraham23/status_x_java_bindings 
Status x java bindings
 2015-08-03 09:26:16 -06:00
Gilles Gouaillardet
2fa8f4d53a Revert "fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used" 
Optimization was incorrect, so revert this commit.

This reverts commit 83375bcc5c69121ebad7c1df67211ac08729c570.
 2015-08-03 08:45:12 +09:00
Jeff Squyres
047eccef8d Merge pull request #725 from bosilca/treematch 
Add a new topo module: Treematch
 2015-07-31 15:17:54 -04:00
Howard Pritchard
8649a9f6ef Merge pull request #757 from roblatham00/lustre-excl-open-fix 
hint processing should not open files
 2015-07-31 12:16:14 -06:00
Howard Pritchard
f18988c06f Merge pull request #764 from nrgraham23/Datatype.java_comment_fixes 
Commenting fixes for Datatype.java
 2015-07-31 12:03:04 -06:00
rhc54
a9b10cfbf0 Merge pull request #761 from jithinjosepkl/master 
Fix warnings in direct (pml-cm,mtl-ofi) build
 2015-07-31 09:15:30 -07:00
Edgar Gabriel
ffa67b9693 Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with 
our optimized default file view. Otherwise, performance will suffer. file_get_view should still return the correct filetype, not our optimized default file view
 2015-07-30 19:15:00 -05:00
Edgar Gabriel
93a303ba89 Performance tuning: make sure the individual component is selected for 1 and 2 process communicators (important for some benchmarks) 2015-07-30 17:31:16 -05:00
Edgar Gabriel
9b2a7e41f0 make sure the final number of aggregators is recorded correctly when not using 
our aggregator selection logic.
 2015-07-30 17:24:01 -05:00
Nathaniel Graham
57b95fff2e Commenting fixes for Datatype.java 
Some of the @code tags were incorrect.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:17:55 -06:00
Nathaniel Graham
17c606b35c White Space Fixes 
Github revealed some wierd spacing issues.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:07:19 -06:00
Nathaniel Graham
2fecb06059 Status X Functons 
Includes java bindings for MPI_GET_ELEMENTS_X and
MPI_STATUS_SET_ELEMENTS_X.  This PR also adds the
Count object which represents MPI_Count.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:00:13 -06:00
Howard Pritchard
ac4197fb1b Merge pull request #760 from nrgraham23/request_get_status_java 
Java binding for MPI_REQUEST_GET_STATUS
 2015-07-30 13:57:06 -06:00
Rob Latham
6e9cbe397f hint processing should not open files 
move opening of files from hint processing and into open routines.

This is MPICH commit 92f1c69f0de8 and 22a77dceda11

see https://trac.mpich.org/projects/mpich/ticket/2261
Ref: https://github.com/open-mpi/ompi/issues/158

Signed-off-by: Pavan Balaji <balaji@anl.gov>
 2015-07-30 12:25:20 -05:00
Nysal Jan K.A
5a7bd898f9 Fix an invalid memory access in mrecv & imrecv 
After the call to PML mrecv/imrecv, the message handle
is set to MPI_MESSAGE_NULL. Use the cached communicator
while invoking the error handler.
 2015-07-30 19:52:40 +05:30
Jithin Jose
bc4e8b7e73 Fix warnings in direct (pml-cm,mtl-ofi) build 
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
 2015-07-29 15:49:37 -07:00
Howard Pritchard
ea6f5b31fd Merge pull request #749 from nrgraham23/additional_comm_java_bindings 
Additional java bindings for the Comm class
 2015-07-29 16:17:54 -06:00
Edgar Gabriel
477083bca3 the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 2015-07-29 17:13:55 -05:00
Edgar Gabriel
217dcca853 - the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 
- implementation of file_get_size and set_size
 2015-07-29 17:10:39 -05:00
yohann
6eba52a121 mtl/ofi: add missing return. 2015-07-29 14:14:34 -07:00
Nathaniel Graham
9b5786d954 Java binding for MPI_REQUEST_GET_STATUS 
This adds the java binding for MPI_REQUEST_GET_STATUS.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 12:04:46 -06:00
Howard Pritchard
569764cd98 Merge pull request #759 from nrgraham23/status_java_bindings 
Java bindings for Status methods
 2015-07-29 10:36:56 -06:00
Nathaniel Graham
efe69c89a7 Java bindings for Status methods 
Includes java bindings for the MPI_STATUS_SET_ELEMENTS and
MPI_STATUS_SET_CANCELLED.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 09:47:03 -06:00
Ralph Castain
023936e84b Silence coverity warnings 2015-07-29 07:28:08 -07:00
Gilles Gouaillardet
83375bcc5c fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used 2015-07-29 10:00:27 +09:00
Edgar Gabriel
a3327fe299 Merge pull request #756 from edgargabriel/pr/nb-sharedfp-splitcoll2 
- make the split collective shared file pointer operations work
 2015-07-28 19:53:27 -05:00
Edgar Gabriel
3780089ce0 clean up the usage of opal_output vs. printf 2015-07-28 18:27:31 -05:00
Howard Pritchard
377bad18bd Merge pull request #747 from hppritcha/topic/ofi_progress_fix 
mtl/ofi: don't inline ofi progress method
 2015-07-28 09:42:01 -06:00
Edgar Gabriel
f09b834cab remove the C++ interfaces for the new non-blocking collective I/O functions. They are not defined in MPI 3.1 2015-07-28 09:28:37 -05:00
Edgar Gabriel
824d488709 - make the split collective shared file pointer operations work 
- minor code restructering in io/ompio required for that.
 2015-07-28 09:05:05 -05:00
Edgar Gabriel
e380f8c235 - fix the delete priority of the ompio component 
- some application use MPI_File_delete as a collective function (e.g. IOR), which I think is not really covered by the standard. Right now, one process succeeds and theother ones return an error code. Fix that by not returning no error if the file that we try to delete does not exist anymore, to make these applications work.
 2015-07-27 15:53:40 -05:00
Edgar Gabriel
3fb0614566 mark the request as ACTIVE 2015-07-27 12:43:45 -05:00
Edgar Gabriel
5e166c81a1 Merge pull request #745 from edgargabriel/pr/sharedfp-sm-logic3 
Pr/sharedfp sm logic3
 2015-07-27 12:04:53 -05:00
Howard Pritchard
f5c43c1185 mtl/ofi: retain inline progress function 
Retain inline progress function for ofi
mtl, but have a non-inlined progress function
which is registered with the opal progress
mechanism.

 @jithinjosepkl

I've bad news about the psm provider.  I still notice
segfaults - not always - but frequently at finalize
when using the psm provider.  I don't notice this
when using the sockets provider.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-27 09:16:52 -06:00
Gilles Gouaillardet
9c77c6b66d fortran: fix f08 bindings 
only define the unique fortran symbol depending on
 - CAPS
 - PLAIN
 - SINGLE_UNDERSCORE
 - DOUBLE_UNDERSCORE
and bind the f08 symbol to the uniquely defined C symbol.

Use real data structures to make the code simpler.
(perl script written by Jeff)
 2015-07-27 16:28:57 +09:00
Gilles Gouaillardet
318a1a40a4 coll/libnbc: ireduce_scatter_block 
silence malloc(0) warning reported by Lisandro
 2015-07-27 16:23:08 +09:00
Gilles Gouaillardet
7af5238595 f08: misc Makefile fixes 2015-07-27 16:19:44 +09:00
George Bosilca
e239de581b Create a new topology framework using the TreeMatch library developped 
at Inria Bordeaux. This allows us to take advantage of the remap
capability of MPI to rearrange the ranks beased on the weights
povided by the application.

Fix the indentation and protect with __DEBUG__ one fprintf.

Add the Cecill-B license to the imported library.

Fix a compiler warning.

Restrict the TreeMatch dependencies.

The TreeMatch software is released under BSD3 (as indicated by their
copyright information @
https://gforge.inria.fr/scm/viewvc.php/COPYING?view=markup&root=treematch).

Update the README.
 2015-07-25 13:30:42 -04:00
Jeff Squyres
3e6694f7ea sharedfp: whitespace cleanup 
No code changes.

Replace tabs with spaces and do other whitespace cleanup (via emacs).
 2015-07-25 05:46:37 -07:00
Jeff Squyres
868a84d4da sharedfp: have sm_data->mutex always point to the right mutex 
Even if the mutex is actually located in
sm_data->sm_offset_ptr->mutex, have sm_data->mutex point to it.  This
avoids a few #if blocks that are otherwise identical.
 2015-07-25 05:42:57 -07:00
Jeff Squyres
5e159feb5a get_library_version: always use "X.Y.Z" version number format 
Fix one last place where we would write only "X.Y" if Z was 0 (we now
always write all three X, Y, Z values, even if Z is zero).
 2015-07-25 08:01:36 -04:00
Nathaniel Graham
59c43f4669 Additional java bindings for the Comm class 
Added bindings for MPI_COMM_CREATE_GROUP and MPI_COMM_DUP_WITH_INFO.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 16:14:35 -06:00
Nathaniel Graham
f87c41e926 Fix a compile issue in MPI.java 
A conflict was not fully resolved in the previous merge.  This
fixes the issue that was created.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:54:52 -06:00
Nathaniel Graham
0d7a38552e Formatting fixes for Java files. 
Fixed tab indenting as well as some of the block comments
at the top of a few of the files.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:02:13 -06:00