1
1

29216 Коммитов

Автор SHA1 Сообщение Дата
Mikhail Kurnosov
dfe203e167 coll/libnbc: add recursive doubling algorithm for MPI_Iexscan
Implements recursive doubling algorithm for MPI_Iexscan.
The algorithm preserves order of operations so it can be used both
by commutative and non-commutative operations.

The MCA parameter 'coll_libnbc_iexscan_algorithm' was added for dynamic
algorithm selection.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-09-23 19:54:27 +07:00
Jeff Squyres
176da51aec mca_base_var: fix output bug about settable vars
Fix the test that determined whether we output "writeable" or
"read-only" for MCA vars (it was checking the wrong flag).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-22 07:18:45 -07:00
Mikhail Kurnosov
3d43ff0f32 coll/libnbc: add recursive doubling algorithm for MPI_Iscan
Implements recursive doubling algorithm for MPI_Iscan. The algorithm preserves order of operations so it can be used both by commutative and non-commutative operations.

The MCA parameter coll_libnbc_iscan_algorithm was added for dynamic algorithm selection.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-09-22 21:09:12 +07:00
bosilca
3f598e9e83
Merge pull request #5450 from mkurnosov/coll-base-allgather-fix-in-place
coll-base-allgather: fix MPI_IN_PLACE processing
2018-09-21 14:51:45 -04:00
bosilca
17f1684438
Merge pull request #5491 from mkurnosov/coll-base-allgatherv-fix-mpi-in-place
coll/base/allgatherv: fix MPI_IN_PLACE processing
2018-09-21 14:48:16 -04:00
Nathan Hjelm
c6230657a2 opal: fix warning
Fixes #5713

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2018-09-21 00:51:40 -06:00
Yossi Itigin
8bd89b8d43
Merge pull request #5717 from yosefe/topic/shmem-lock-progress
shmem/lock: progress communications while waiting for shmem_lock
2018-09-20 18:49:08 +03:00
Yossi Itigin
a31dc5ddcb
Merge pull request #5725 from amaslenn/platform-mellanox
platform/mellanox: cleanup autodetect config
2018-09-20 18:48:43 +03:00
Yossi Itigin
b18af26f4b
Merge pull request #5726 from amaslenn/platform-mellanox-conf
platform/mellanox: update default configuration
2018-09-20 18:48:18 +03:00
Brian Barrett
9344afd485 openib: Disable CUDA async by default
Disable async receive for CUDA under OpenIB.  While a performance
optimization, it also causes incorrect results for transfers
larger than the GPUDirect RDMA limit.  This change has been validated
and approved by Akshay.

References #3972

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-09-20 07:58:10 -07:00
Howard Pritchard
dccf780546
Merge pull request #5737 from hppritcha/topic/remove_scif_support
SCIF: remove it
2018-09-19 11:38:27 -06:00
Howard Pritchard
b9ac3d8931 SCIF: remove it
KNC is effectively dead.  Remove corresponding SCIF
support in Open MPI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-09-19 10:39:52 -06:00
bosilca
441727fcb0
Merge pull request #5680 from ggouaillardet/topic/nbc_unpack
coll/libnbc: fix NBC_Unpack()
2018-09-19 10:17:21 -04:00
bosilca
2ae3cfd9bc
Merge pull request #5699 from ICLDisco/export/coll_errors
Error cases in base collectives
2018-09-19 09:47:24 -04:00
bosilca
b0e2975f86
Merge pull request #5701 from ICLDisco/export/errors_ib
Adding error handling in OpenIB BTL
2018-09-19 09:45:58 -04:00
bosilca
464e1abbab
Merge pull request #5700 from ICLDisco/export/tcp_errors
Handle error cases in TCP BTL
2018-09-19 09:44:38 -04:00
Jeff Squyres
3dae8703a5
Merge pull request #5451 from ggouaillardet/topic/use_mpi_f08_bindings
fortran/use-mpi-f08: clean [p]ompi_FOO_f bindings
2018-09-19 07:53:04 -04:00
KAWASHIMA Takahiro
6e4ac8b932
Merge pull request #5734 from t-kurita/pr/java-doc-descriptions
java: Fix typos of `javadoc`
2018-09-19 16:39:58 +09:00
Kurita, Takehiro
fb8311d331 java: Fix typos of javadoc
Signed-off-by: Kurita, Takehiro <fj6370fp@aa.jp.fujitsu.com>
2018-09-19 14:45:17 +09:00
Gilles Gouaillardet
c4ce01d104 fortran/use-mpi-f08: use bindings from ompi_mpifh_bindings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-09-19 14:13:00 +09:00
Gilles Gouaillardet
c6070fd2e0 fortran/use-mpi-f08: fix [p]ompi_FOO_f symbols handling
- do not generate bindings for pompi_FOO_f symbols
   (they are simply not used anywhere)

 - move ompi_FOO_f bindings out of mpi_f08.mod into
   ompi_mpifh_bindings.mod that is only used at build time

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-09-19 14:12:55 +09:00
Gilles Gouaillardet
6e04b2a66a configury: do not define "dummy" empty targets any more.
We previously needed to have empty targets because AM couldn't handle
having an AM_CONDITIONAL was targets in the "if" statement but not in the
"else".  :-(

That now appears as an old automake bug that has been fixed,
so cleanup some Makefile.am

Thanks Jeff for the pointer.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-09-19 14:12:50 +09:00
Gilles Gouaillardet
d2393251f7 use-mpi-f08: fix a typo in [P]MPI_Dist_graph_create_adjacent bindings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-09-19 14:12:46 +09:00
Jeff Squyres
cf2880cae6
Merge pull request #5731 from jsquyres/pr/fix-c11-atomic-configury
opal_config_asm.m4: fix typo in new C11 atomic code
2018-09-18 18:07:53 -04:00
Jeff Squyres
c0fff499cf opal_config_asm.m4: fix typo in new C11 atomic code
Delete an obvious typo.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-18 14:18:51 -07:00
Jeff Squyres
09d6740a72
Merge pull request #4897 from bosilca/topic/waitsome
Be conservative with the array_of_indices
2018-09-18 12:34:22 -04:00
Jeff Squyres
cfc03d4d63
Merge pull request #5724 from amaslenn/rpmbuild-topdir
rpmbuild: fix rpmtopdir redefinition
2018-09-18 12:25:02 -04:00
Ralph Castain
8a200ba2ee
Merge pull request #5716 from mkuron/eopnotsupp
Deal with EOPNOTSUPP returned from getsockopt()
2018-09-18 08:56:40 -07:00
Andrey Maslennikov
da18a2d24c platform/mellanox: update default configuration
Signed-off-by: Andrey Maslennikov <andreyma@mellanox.com>
2018-09-18 09:51:47 +03:00
Andrey Maslennikov
ced50a98ff platform/mellanox: cleanup autodetect config
Signed-off-by: Andrey Maslennikov <andreyma@mellanox.com>
2018-09-18 09:47:51 +03:00
KAWASHIMA Takahiro
e27f519a5e
Merge pull request #5722 from kawashima-fj/pr/pcoll-typo
mpiext/pcollreq: fix more typos
2018-09-18 15:41:20 +09:00
Andrey Maslennikov
c7d51a3a83 rpmbuild: fix rpmtopdir redefinition
Erasing this variable by default makes outside definition useless.

Signed-off-by: Andrey Maslennikov <andreyma@mellanox.com>
2018-09-18 09:38:01 +03:00
Gilles Gouaillardet
a997ec8a10
Merge pull request #5721 from ggouaillardet/topic/libnbc_error_path
coll/libnbc: fix various error paths
2018-09-18 15:28:03 +09:00
KAWASHIMA Takahiro
4a0a2598f6 mpiext/pcollreq: fix more typos
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-09-18 14:45:33 +09:00
Gilles Gouaillardet
8b51862fb2 coll/libnbc: fix various error paths
The parameter passed to NBC_Return_handle() was incorrectly casted
and not dereferenced.

Thanks Yossi for the bug report.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-09-18 13:17:43 +09:00
Gilles Gouaillardet
821cccc1f0
Merge pull request #5719 from ggouaillardet/topic/pcollreq_typos
mpiext/pcollreq: fix misc typos
2018-09-18 12:42:15 +09:00
Gilles Gouaillardet
8dc6985a5a mpiext/pcollreq: fix misc typos
Thanks Jeff for the report

Fixes open-mpi/ompi#5712

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-09-18 10:02:04 +09:00
Yossi Itigin
41011502c8 shmem/lock: progress communications while waiting for shmem_lock
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-09-16 18:46:36 +03:00
Michael Kuron
17b0f1fcc3 Deal with EOPNOTSUPP returned from getsockopt()
This can be returned when running on QEMU user-mode emulation,
which does not support getsockopt with SO_RCVTIMEO.

Signed-off-by: Michael Kuron <mkuron@icp.uni-stuttgart.de>
2018-09-16 14:55:28 +02:00
Jeff Squyres
fddad2e8cb
Merge pull request #5715 from jsquyres/pr/update-automake-min-to-1.13.4
Update Automake minimum version to 1.13.4
2018-09-15 17:22:20 -04:00
Jeff Squyres
d246fb7897 Update Automake minimum version to 1.13.4
The embedded PMIx Automake minimum version is already 1.13.4, so to
autogen.pl Open MPI successfully, you already have to have Autoamek
1.13.4.  So we might as well make it official (i.e., bump Open MPI's
Automake minimum to match the Automake minimum in the embedded PMIx).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-15 13:29:30 -07:00
bosilca
37b7a48dca
Merge pull request #5669 from jsquyres/pr/minor-compiler-warning-fixes
misc: compiler warning fixes
2018-09-15 12:01:02 -04:00
Jeff Squyres
5be0ba0247 common/monitoring: fix include files
Move includes to top of file.  Set some #defines so that
monitoring_prof.c compiles without warning (as identified by gcc 8 on
MacOS).  Also ensure to include the internal Open MPI "mpi.h" file
(not some random system <mpi.h> file).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-15 06:04:13 -07:00
Jeff Squyres
06c1bf73da libnbc: remove some stale/dead code
Gcc 8 identified hb_tree_csearch() as an infinite recursion, and it
turns out that we never call this function, anyway.  So just remove
it.

Fixes #5670.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-15 06:04:13 -07:00
Jeff Squyres
3970b06134 misc: passing a bool to va_start() is undefined
According to clang on MacOS, passing a bool parameter -- which
undergoes default parameter promotion -- to va_start() results in
undefined behavior.  So just change these params to int and avoid the
issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-15 06:04:13 -07:00
Jeff Squyres
8f2620d3af misc: compiler warning fixes
A variety of small compiler warning fixes.  The 2 PMIx fixes are
already committed upstream.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-15 06:04:13 -07:00
Nathan Hjelm
6363889cd0
Merge pull request #5696 from hjelmn/vader_5375
btl/vader: ensure that the send tag is always written last
2018-09-14 12:33:35 -06:00
Nathan Hjelm
1071d72130
Merge pull request #5445 from hjelmn/asm_type
Update opal to use C11 atomics if available
2018-09-14 12:32:56 -06:00
Aurelien Bouteiller
466217fadd
Always return a valid error code from collective operations
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2018-09-14 13:46:35 -04:00
Nathan Hjelm
fe6528b0d5 opal/atomic: always use C11 atomics if available
This commit disables the use of both the builtin and hand-written
atomics if proper C11 atomic support is detected. This is the first
step towards requiring the availability of C11 atomics for the C
compiler used to build Open MPI.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-14 10:51:05 -06:00