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Граф коммитов

17214 Коммитов

Автор SHA1 Сообщение Дата
Vishwanath Venkatesan
8d4bb65bd4 Modifying the explicit operations to make it absolute
This commit was SVN r26451.
2012-05-18 21:43:34 +00:00
Vishwanath Venkatesan
cbad31cc88 1. Freeing the displs array after allgatherv to avoid segmentation faults in dynamic segmentation
2. Checking for 0 bytes datatypes  and sending only when data available to avoid 0 byte messages being sent and received. 
3. Changing timing extraction to support calculating, min, max and avg communication costs + min and avg write costs

This commit was SVN r26450.
2012-05-18 21:39:58 +00:00
Ralph Castain
b16e43f489 Silence a warning on Mac
This commit was SVN r26449.
2012-05-18 15:27:04 +00:00
Ralph Castain
ca1b325738 Tweak the java setup so it works better on Mac. Only build mapreduce and allocators if hadoop support was requested.
This commit was SVN r26448.
2012-05-18 01:02:01 +00:00
Rolf vandeVaart
f8ace21366 Rename a few things for clarity. Add a stream.
This commit was SVN r26447.
2012-05-17 18:10:59 +00:00
Jeff Squyres
5fb48bafda Fixes trac:3093: when cleaning up, only reset items in the
ompi_mpi_errcodes array to NULL if the index is not MPI_UNDEFINED.
Thanks to Alexey Bayduraev for the patch.

This commit was SVN r26446.

The following Trac tickets were found above:
  Ticket 3093 --> https://svn.open-mpi.org/trac/ompi/ticket/3093
2012-05-16 15:26:32 +00:00
Jeff Squyres
cab31eafce Revert r26413: it was causing too much confusion. When an MPI proc
exits with status 77, the whole job will be killed, but mpirun will
still return an exit status of 77, so MTT will report it as a skip
anyway. 

This commit was SVN r26445.

The following SVN revision numbers were found above:
  r26413 --> open-mpi/ompi@02aa36f2e5
2012-05-16 14:45:58 +00:00
Jeff Squyres
2cf8b874d5 Oops -- forgot to include file_get_position_shared in r26439.
This commit was SVN r26442.

The following SVN revision numbers were found above:
  r26439 --> open-mpi/ompi@d74795b299
2012-05-15 19:51:15 +00:00
Jeff Squyres
dab7d36a81 Fix location of the default hostfile. Thanks to Götz Waschk for
identifying the problem.

This commit was SVN r26441.
2012-05-15 16:13:39 +00:00
Rolf vandeVaart
c228bd2311 Fix broken compile. Keep in sync with sm btl.
This commit was SVN r26440.
2012-05-15 15:32:33 +00:00
Jeff Squyres
d74795b299 Fix #3094: do the correct cast for the right integer size.
This commit was SVN r26439.
2012-05-15 15:15:33 +00:00
Jeff Squyres
8c209ca32a Oops -- Tiger is 10.4, not 10.3.
This commit was SVN r26435.
2012-05-14 14:12:55 +00:00
Yevgeny Kliteynik
d59b8d5dc4 Fixing malformed error message
This commit was SVN r26434.
2012-05-12 21:13:42 +00:00
Ralph Castain
1826b513ee Add missing windows file
This commit was SVN r26433.
2012-05-12 02:05:25 +00:00
Mike Dubman
98c2c749fb fix define name to BTL_OPENIB_MALLOC_HOOKS_ENABLED
Thanks to Ludovic.Hablot@ext.bull.net  for pointing this out

This commit was SVN r26432.
2012-05-11 18:30:45 +00:00
Ralph Castain
09f413025b As per the RFC, upgrade OMPI to libevent 2.0.19. Leave the 2.0.13 release in the system, but inactive, for now in case we discover a need to rollback.
This commit was SVN r26431.
2012-05-11 01:05:36 +00:00
Brian Barrett
2e52374847 * Split send and receive eq sizes
* Need to look at slot count before flowcontrol for sending to prevent
  race in restart
* Need to free pending request fragments when done with the request
* A number of branch prediction optimizations for error conditions

This commit was SVN r26430.
2012-05-10 21:43:48 +00:00
Jeff Squyres
2d78728d38 Fix the macro name in the comment: it's EXTRA_DIST, not EXTRA_SOURCES.
This commit was SVN r26429.
2012-05-10 14:07:36 +00:00
Jeff Squyres
ddcdc20640 Reconcile NEWS with 1.6 branch
This commit was SVN r26428.
2012-05-10 14:04:48 +00:00
Jeff Squyres
b325c17c72 It's a little weird to put in a blank _SOURCES line for the
HDFSFileFinder PROGRAM, but if we don't put in a _SOURCES line at all,
Automake will default to "HDFSFileFinter_class_SOURCES =
HDFSFileFinder.c", which clearly will cause problems.  

But we don't want to put the .java file in _SOURCES, either, because
we haven't configured Automake to handle Java (because current
versions of Automake only have GCJ, not other Java compilers).  So set
HDFSFileFinder_class_SOURCES to blank and list the .java file in
EXTRA_SOURCES (so that they get picked up for "make dist").

This commit was SVN r26424.
2012-05-10 13:54:51 +00:00
Yevgeny Kliteynik
244d66d95b Fixed FDR link speed details, added EDR.
This commit was SVN r26423.
2012-05-10 13:44:18 +00:00
Jeff Squyres
1d7fef001c Record the upstream hwloc commit that we've committed here in the OMPI
tree

This commit was SVN r26422.
2012-05-10 12:15:23 +00:00
Ralph Castain
b9d560263f Ensure we properly handle systems that do not have a jdk installed
This commit was SVN r26421.
2012-05-10 12:06:59 +00:00
Ralph Castain
b143633593 Fix java config
This commit was SVN r26420.
2012-05-10 01:51:02 +00:00
Nathan Hjelm
91d99c6fef ugni: reserve memory domain descriptors (MDDs) for mailbox registration
This commit was SVN r26419.
2012-05-10 00:24:42 +00:00
Jeff Squyres
9c9d7e77df Commit a fix for hwloc -- still checking with upstream to see if this
will be the final solution.  But I'm committing it now so that
Oracle's Solaris Studio builds can resume.

The issue is that the C++ bindings are now (eventually) including
<hwloc.h>.  We use !__hwloc_inline__ and #define it to an appropriate
value at compile-time.  The issue is that when we're compiling C++
code, we should just set !__hwloc_inline__ to "inline", because that's
a keyword in the C++ language (as opposed to !__inline__, or
somesuch).

This commit was SVN r26418.
2012-05-09 21:03:45 +00:00
Jeff Squyres
de4bbacd13 It turns out that we can't always include the hwloc OpenFabrics verbs
helper file, even if we find that the system has <infiniband/verbs.h>.
The reason is because there are some inline functions in that verbs
helper file that invoke ibv_* functions.  Some linkers (e.g., Solaris
Studio Compilers) will instantiate those static inline functions --
even if we don't use them -- and therefore we need to be able to
resolve the ibv_* symbols at link time.

But since -libverbs is only specified in places where we use other
ibv_* functions (e.g., the OpenFabrics-based BTLs), that means that
linking random executables can/will fail (e.g., orterun).

So instead, introduce a new #define: OPAL_HWLOC_WANT_VERBS_HELPER.  If
this macro is set to 1 before including opal/mca/hwloc/hwloc.h, then
you'll also get the hwloc OpenFabrics verbs helper header file (*if*
hwloc found <infiniband/verbs.h> -- otherwise, it'll #error).

This commit was SVN r26417.
2012-05-09 20:18:31 +00:00
Ralph Castain
640f0610aa Fix the makefile to install the perl scripts properly
This commit was SVN r26416.
2012-05-09 14:06:02 +00:00
Jeff Squyres
50bac6d4d7 Oops! This is a stale file (i.e., old implementation that isn't used anymore).
This commit was SVN r26415.
2012-05-09 13:35:39 +00:00
Ralph Castain
fd796cce0a Add an allocator tool for finding HDFS file locations and obtaining allocations for those nodes (supports both Hadoop 1 and 2). Split the Java support into two parts: detection of Java support and request for Java bindings.
This commit was SVN r26414.
2012-05-09 01:13:49 +00:00
Jeff Squyres
02aa36f2e5 ORTE defaults to killing the entire job when any process exits with a
nonzero status (we polled other MPI implementations since one one in
the OMPI community had a concrete opinion on what behavior to do here
-- all other MPI's seem to adhere to this behavior, too).

This commit adds an MCA parameter that allows us to tell ORTE to
''not'' kill jobs when a process exits with a status of 77, meaning
the GNU testing standard of "this test was skipped".  In all the OMPI
tests, all procs will either return 77 or not.  So if they all return
77, mpirun won't consider it an error, but will still return an exit
status of 77 (so that MTT can know that the test was cleanly skipped).

This commit was SVN r26413.
2012-05-08 21:49:05 +00:00
Jeff Squyres
c00d1d4f91 Add note that --bind-to-socket does not work on some Linux kernels for
POWER6 and POWER7 systems.  

This is still an unresolved issue; the Linux kernel does not expose
enough (correct) information for OMPI to be able to do anything
rational.  IBM is working on it.

This commit was SVN r26410.
2012-05-08 21:27:36 +00:00
Mike Dubman
cd17fee9a8 performance fix: openib use memalign for malloc
This commit was SVN r26409.
2012-05-08 20:42:09 +00:00
Jeff Squyres
3928a1ea42 Add missing AC_MSG_CHECKING (i.e., we were seeing a result message
without a corresponding "checking" message)

This commit was SVN r26408.
2012-05-08 17:20:09 +00:00
Jeff Squyres
e35ca05917 * Update svn:ignore to ignore example program
* Add "example" executable to CLEANFILES

This commit was SVN r26407.
2012-05-08 14:59:14 +00:00
Ralph Castain
84d031d6c1 Add daemon object to job array after creation
This commit was SVN r26406.
2012-05-08 13:39:20 +00:00
Ralph Castain
70d4f14be3 Add affinity extension to platform file
This commit was SVN r26404.
2012-05-08 04:00:05 +00:00
Ralph Castain
70a106fa71 Fix binding on remote nodes - need to pass the binding bitmap!
This commit was SVN r26403.
2012-05-08 03:52:39 +00:00
Nathan Hjelm
903f9fac09 ugni: fixed buffered sends and code cleanup
This commit was SVN r26401.
2012-05-07 17:23:06 +00:00
Nathan Hjelm
49eda71ca0 ugni: fix invalid parameter with opal_pointer_array_init
This commit was SVN r26400.
2012-05-07 17:22:55 +00:00
Nathan Hjelm
584c457352 ugni: update smsg defaults and add parameter to control local completion queue size
This commit was SVN r26399.
2012-05-07 17:22:49 +00:00
Nathan Hjelm
bfcf67391a ugni: set fragment id from opal_pointer_array_add
This commit was SVN r26398.
2012-05-07 17:22:42 +00:00
Nathan Hjelm
b3dc726e9d ugni: don't create completion queues until add_procs
This commit was SVN r26397.
2012-05-07 17:22:35 +00:00
Nathan Hjelm
0e48ea1f65 vader: remove #include of headers that no longer exist
This commit was SVN r26396.
2012-05-07 17:22:28 +00:00
Nathan Hjelm
a32d4c648d ob1: rewind convertor after failed send
This commit was SVN r26395.
2012-05-07 17:22:22 +00:00
Nathan Hjelm
b94e7af5c8 LANL: update XE-6 platform files
This commit was SVN r26394.
2012-05-07 17:22:14 +00:00
Jeff Squyres
43f3332929 Add an OMPI_Affinity_str() example program.
This commit was SVN r26393.
2012-05-07 15:19:23 +00:00
Jeff Squyres
a6d5654623 Update README and NEWS to reflect that carto, maffinity, and paffinity
are gone.

This commit was SVN r26392.
2012-05-07 14:58:59 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Mike Dubman
1b475523de add support for FDR speed
This commit was SVN r26385.
2012-05-06 05:53:05 +00:00