Samples are taken after MPI_Init, and then again after MPI_Barrier. This allows the user to see memory consumption caused by add_procs, as well as any modex contribution from forming connections if pmix_base_async_modex is given.
Using the probe simply involves executing it via mpirun, with however many copies you want per node. Example:
$ mpirun -npernode 2 ./mpi_memprobe
Sampling memory usage after MPI_Init
Data for node rhc001
Daemon: 12.483398
Client: 6.514648
Data for node rhc002
Daemon: 11.865234
Client: 4.643555
Sampling memory usage after MPI_Barrier
Data for node rhc001
Daemon: 12.520508
Client: 6.576660
Data for node rhc002
Daemon: 11.879883
Client: 4.703125
Note that the client value on node rhc001 is larger - this is where rank=0 is housed, and apparently it gets a larger footprint for some reason.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Still not completely done as we need a better way of tracking the routed module being used down in the OOB - e.g., when a peer drops connection, we want to remove that route from all conduits that (a) use the OOB and (b) are routed, but we don't want to remove it from an OFI conduit.
This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.
All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
Fix the state machine to support multiple jobs being simultaneously launched as this is not only required for mapreduce, but can happen under comm-spawn applications as well.
This commit was SVN r26380.
Roll in the ORTE state machine. Remove last traces of opal_sos. Remove UTK epoch code.
Please see the various emails about the state machine change for details. I'll send something out later with more info on the new arch.
This commit was SVN r26242.
To enable the epochs and the resilient orte code, use the configure flag:
--enable-resilient-orte
This will define both:
ORTE_ENABLE_EPOCH
ORTE_RESIL_ORTE
This commit was SVN r25093.
Note: the ompi_check_libfca.m4 file had to be modified to avoid it stomping on global CPPFLAGS and the like. The file was also relocated to the ompi/config directory as it pertains solely to an ompi-layer component.
Forgive the mid-day configure change, but I know Shiqing is working the windows issues and don't want to cause him unnecessary redo work.
This commit was SVN r23966.
Setup the event API to support multiple bases in preparation for splitting the OMPI and ORTE events. Holding here pending shared memory resolution.
This commit was SVN r23943.
This is a fairly intrusive change, but outside of the moving of opal/event to opal/mca/event, the only changes involved (a) changing all calls to opal_event functions to reflect the new framework instead, and (b) ensuring that all opal_event_t objects are properly constructed since they are now true opal_objects.
Note: Shiqing has just returned from vacation and has not yet had a chance to complete the Windows integration. Thus, this commit almost certainly breaks Windows support on the trunk. However, I want this to have a chance to soak for as long as possible before I become less available a week from today (going to be at a class for 5 days, and thus will only be sparingly available) so we can find and fix any problems.
Biggest change is moving the libevent code from opal/event to a new opal/mca/event framework. This was done to make it much easier to update libevent in the future. New versions can be inserted as a new component and tested in parallel with the current version until validated, then we can remove the earlier version if we so choose. This is a statically built framework ala installdirs, so only one component will build at a time. There is no selection logic - the sole compiled component simply loads its function pointers into the opal_event struct.
I have gone thru the code base and converted all the libevent calls I could find. However, I cannot compile nor test every environment. It is therefore quite likely that errors remain in the system. Please keep an eye open for two things:
1. compile-time errors: these will be obvious as calls to the old functions (e.g., opal_evtimer_new) must be replaced by the new framework APIs (e.g., opal_event.evtimer_new)
2. run-time errors: these will likely show up as segfaults due to missing constructors on opal_event_t objects. It appears that it became a typical practice for people to "init" an opal_event_t by simply using memset to zero it out. This will no longer work - you must either OBJ_NEW or OBJ_CONSTRUCT an opal_event_t. I tried to catch these cases, but may have missed some. Believe me, you'll know when you hit it.
There is also the issue of the new libevent "no recursion" behavior. As I described on a recent email, we will have to discuss this and figure out what, if anything, we need to do.
This commit was SVN r23925.
OMPI_* to OPAL_*. This allows opal layer to be used more independent
from the whole of ompi.
NOTE: 9 "svn mv" operations immediately follow this commit.
This commit was SVN r21180.
- Delete unnecessary header files using
contrib/check_unnecessary_headers.sh after applying
patches, that include headers, being "lost" due to
inclusion in one of the now deleted headers...
In total 817 files are touched.
In ompi/mpi/c/ header files are moved up into the actual c-file,
where necessary (these are the only additional #include),
otherwise it is only deletions of #include (apart from the above
additions required due to notifier...)
- To get different MCAs (OpenIB, TM, ALPS), an earlier version was
successfully compiled (yesterday) on:
Linux locally using intel-11, gcc-4.3.2 and gcc-SVN + warnings enabled
Smoky cluster (x86-64 running Linux) using PGI-8.0.2 + warnings enabled
Lens cluster (x86-64 running Linux) using Pathscale-3.2 + warnings enabled
This commit was SVN r21096.
1. fix a race condition whereby a proc's output could trigger an event prior to the other outputs being setup, thus c ausing the IOF to declare the proc "terminated" too early. This was really rare, but could happen.
2. add a new "timestamp-output" option that timestamp's each line of output
3. add a new "output-filename" option that redirects each proc's output to a separate rank-named file.
4. add a new "xterm" option that redirects the output of the specified ranks to a separate xterm window.
This commit was SVN r20392.
Basically, the remaining problem turned out to be:
1. closing stdout/stderr during orte_finalize of mpirun
2. inadvertently setting up a write event on fd = -1
3. devising a scheme to more accurately track when the stdin write event was active vs closed so it only got released once
This passed prelim MTT testing by Jeff and Tim, but should soak for awhile before migrating to 1.3.
This commit was SVN r20106.
The following SVN revision numbers were found above:
r20064 --> open-mpi/ompi@a07660aea8
r20068 --> open-mpi/ompi@ec930d14a9
r20074 --> open-mpi/ompi@2940309613
1. coordination of job completion notification to include a requirement for both waitpid detection AND notification that all iof pipes have been closed by the app
2. change of all IOF read and write events to be non-persistent so they can properly be shutdown and restarted only when required
3. addition of a delay (currently set to 10ms) before restarting the stdin read event. This was required to ensure that the stdout, stderr, and stddiag read events had an opportunity to be serviced in scenarios where large files are attached to stdin.
This commit was SVN r20064.
1. modify the iof to track when a proc actually closes all of its open iof output pipes. When this occurs, notify the odls that the proc's iof is complete. This is done via a zero-time event so that we can step out of the read event before processing the notification.
2. in the odls, modify the waitpid callback so it only flags that it was called. Add a function to receive the iof-complete notification, and a function that checks for both iof complete and waitpid callback before declaring a proc fully terminated. This ensures that we read and deliver -all- of the IO prior to declaring the job complete.
Also modified the odls call to orte_iof.close (and the component's implementation) so it only closes stdin, leaving the other io channels alone. This fixes the other half of the known problem.
This should fix the ticket on this subject, but I'll wait to close it pending further testing in the trunk.
This commit was SVN r19991.
1. remove some stale files that were overlooked in original commit
2. add a test program and data to stress iof for stdin
3. cleanup a debug statement that caused memory corruption when reading large files
4. some minor cleanups to correctly handle xon/xoff scenarios
This commit was SVN r19792.
1. completely and cleanly separates responsibilities between the HNP, orted, and tool components.
2. removes all wireup messaging during launch and shutdown.
3. maintains flow control for stdin to avoid large-scale consumption of memory by orteds when large input files are forwarded. This is done using an xon/xoff protocol.
4. enables specification of stdin recipients on the mpirun cmd line. Allowed options include rank, "all", or "none". Default is rank 0.
5. creates a new MPI_Info key "ompi_stdin_target" that supports the above options for child jobs. Default is "none".
6. adds a new tool "orte-iof" that can connect to a running mpirun and display the output. Cmd line options allow selection of any combination of stdout, stderr, and stddiag. Default is stdout.
7. adds a new mpirun and orte-iof cmd line option "tag-output" that will tag each line of output with process name and stream ident. For example, "[1,0]<stdout>this is output"
This is not intended for the 1.3 release as it is a major change requiring considerable soak time.
This commit was SVN r19767.
Some minor changes to help facilitate debugger support so that both mpirun and yod can operate with it. Still to be completed.
This commit was SVN r18664.
VxWorks. Still some issues remaining, I'm sure.
Refs trac:1010
This commit was SVN r15320.
The following Trac tickets were found above:
Ticket 1010 --> https://svn.open-mpi.org/trac/ompi/ticket/1010
- use the OPAL functions for PATH and environment variables
- make all headers C++ friendly
- no unamed structures
- no implicit cast.
Plus a full implementation for the orte_wait functions.
This commit was SVN r11347.
different macros, one for each project. Therefore, now we have OPAL_DECLSPEC,
ORTE_DECLSPEC and OMPI_DECLSPEC. Please use them based on the sub-project.
This commit was SVN r11270.
- move files out of toplevel include/ and etc/, moving it into the
sub-projects
- rather than including config headers with <project>/include,
have them as <project>
- require all headers to be included with a project prefix, with
the exception of the config headers ({opal,orte,ompi}_config.h
mpi.h, and mpif.h)
This commit was SVN r8985.
