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Граф коммитов

7697 Коммитов

Автор SHA1 Сообщение Дата
yosefe
3f152733bf Add yalla to the list of default PMLs 2014-12-01 13:11:28 +02:00
Edgar Gabriel
0758d7570e part 1 of the fix to get rid of the missing symbols that prevent the sub-modules to be loaded. 2014-11-29 20:01:36 -06:00
George Bosilca
dee243c58d ompi_proc_finalize has an interesting side effect. A proc is
inserted in the ompi_proc_list as soon as it is created and it
is removed only upon the call to the destructor. In ompi_proc_finalize
we loop over all procs in ompi_proc_finalize and release them once.
However, as a proc is not removed from this list right away, we
decrease the ref count for each proc until it reach zero and the
proc is finally removed. Thus, we cannot clean the BML/BTL after
the call the ompi_proc_finalize.
A quick fix is to delay the call to ompi_proc_finalize until all
other frameworks have been finalized, and then the behavior
depicted above will give the expected outcome.
2014-11-28 18:26:36 -05:00
Nadezhda Kogteva
45ed55afd7 Adding of missed time measurement scripts in tarball 2014-11-28 12:15:30 +02:00
George Bosilca
43901fa15a Merge branch 'master' of github.com:open-mpi/ompi 2014-11-24 22:54:41 -05:00
Ralph Castain
48f702827e First part of memory leak cleanups from Gilles 2014-11-24 16:53:33 -08:00
George Bosilca
fb6ecdfd18 Fix few typos. 2014-11-24 01:48:09 -05:00
George Bosilca
d4edd097c0 Allow for native timer (cycle level) integration
for MPI_Wtime and MPI_Wtick.
2014-11-24 00:45:14 -05:00
Andrew Friedley
e7bcad0c13 Remove unused variable.
Reported by @adrianreber, this patch removes an unused variable in the
PSM MTL, silencing a compiler warning.
2014-11-21 07:51:44 -08:00
George Bosilca
d622db783d Based on https://github.com/open-mpi/ompi/pull/262, we should use
true_lb while computing the lower bound.
2014-11-21 19:16:05 +09:00
Gilles Gouaillardet
705147e98b coll/tuned: fix allgather bruck algorithm 2014-11-21 19:16:05 +09:00
Nathan Hjelm
1b564f62bd Revert "Merge pull request #275 from hjelmn/btlmod"
This reverts commit ccaecf0fd6, reversing
changes made to 6a19bf85dd.
2014-11-19 23:22:43 -07:00
Nathan Hjelm
0d413fb73f Revert "Remove stale file reference"
This reverts commit 4c8fa17234.
2014-11-19 23:16:16 -07:00
Ralph Castain
4c8fa17234 Remove stale file reference 2014-11-19 18:32:19 -08:00
Nathan Hjelm
5a0a48c3c4 osc: remove lingering rdma component files 2014-11-19 12:11:54 -07:00
Nathan Hjelm
1a5349ec79 ompi ignore bfo until it is updated for new btl interface 2014-11-19 11:33:04 -07:00
Nathan Hjelm
8f1a44e60e bml/r2: add all rdma btls even if another btl has higher exclusivity
Background: In order to support atomics each btl needs to provide support
for communicating with self unless the btl module can guarantee global
atomicity. Before this commit bml/r2 discarded any BTL with lower
exclusivity than an existing send btl. This would cause the BML to
discard any btl other than self.

The new behavior is as follows:

 - If an exisiting send btl has higher exclusivity then the btl will not be
   added to the send btl list for the endpoint.

 - If a btl provides RDMA support then it is always added to the rdma btl
   list.

 - bml_btl weight for send btls is now calculated across all send btls.

 - bml_btl weight for rdma btls is now calculated across all rdma btls.

With this change self should still win as the only send btl for loopback
without disqualifying other btls (ugni, openib) for atomic operations.
2014-11-19 11:33:04 -07:00
Nathan Hjelm
22625b005b osc/pt2pt: threading fixes and code cleanup 2014-11-19 11:33:04 -07:00
Nathan Hjelm
60648e4231 add more internal RMA error codes 2014-11-19 11:33:04 -07:00
Nathan Hjelm
0110603782 ob1 warning fix 2014-11-19 11:33:04 -07:00
Nathan Hjelm
45d1fac8af ugni thread safety fixes 2014-11-19 11:33:03 -07:00
Nathan Hjelm
29e4e1c90a Rename the OSC "rdma" component to pt2p to better reflect that it does not actually use btl rdma 2014-11-19 11:33:03 -07:00
Nathan Hjelm
24427639b6 Fix ob1 warnings 2014-11-19 11:33:03 -07:00
Nathan Hjelm
271818f887 pml/ob1: bug fixes and adjustments for changes in btl_sendi behavior 2014-11-19 11:33:03 -07:00
Nathan Hjelm
ee2b111011 Update PML for latest BTL update 2014-11-19 11:33:02 -07:00
Nathan Hjelm
49ff5a79d0 Update BML for the latest BTL update 2014-11-19 11:33:02 -07:00
Nathan Hjelm
c61e017177 pml: updates to reflect member changes in mca_btl_base_descriptor_t
and mca_btl_base_module_t structures
2014-11-19 11:33:02 -07:00
Nathan Hjelm
5936411a07 pml/ob1: when using btl_get try to register the entire region before
attempting to break the get into multiple rdma fragments

A little background. Historically ob1 always registered the entire memory
region when the RGET protocol was in use. This changed when Mellanox
added support to fragment RGET using the btl_prepare_dst function. Now
that the BTL layer has changed to split out the limits of get/put there
is explicit fragmentation code in ob1. Before this commit the registration
was still done per RGET fragment.

This commit will attempt to register the entire region before creating
RGET fragments. If the registration is successfull then all RGET
fragments will use this registration otherwise they will each attempt
to register their own segment of the receive buffer. If that fails
enough times each fragment will give up and fall back on send/recv.
2014-11-19 11:33:02 -07:00
Nathan Hjelm
b75bb8aea7 Update pml for btl changes 2014-11-19 11:33:02 -07:00
Nathan Hjelm
66bd698eaf Update BML for BTL interface changes 2014-11-19 11:33:02 -07:00
Andrew Friedley
b97cda7fd9 PSM MTL: Don't connect procs already connected
PSM has issues when trying calling psm_ep_connect() more than once for a
specific peer.  Use the psm_ep_connect mask argument to avoid connecting
to processes that are already connected.

OMPI ticket #268.
2014-11-12 15:52:02 -08:00
Ralph Castain
780c93ee57 Per the PR and discussion on today's telecon, extend the process name definition as a two-field struct of uint32_t's down to the OPAL layer. This resolves issues created by prior commits that impacted both heterogeneous and SPARC support. This also simplifies the OMPI code base by removing the need for frequent memcpy's when transitioning between the OMPI/ORTE layers and OPAL.
We recognize that this means other users of OPAL will need to "wrap" the opal_process_name_t if they desire to abstract it in some fashion. This is regrettable, and we are looking at possible alternatives that might mitigate that requirement. Meantime, however, we have to put the needs of the OMPI community first, and are taking this step to restore hetero and SPARC support.
2014-11-11 17:00:42 -08:00
Jeff Squyres
a904a2deeb OpenMPI.3in: remove trailing blank lines; no content changes 2014-11-10 08:38:24 -08:00
Gilles Gouaillardet
df6115aac4 topo/base: fix uninitialized variable
this commit fixes a bug introduced by commit open-mpi/ompi@e7c59e3adb
2014-11-10 13:06:50 +09:00
bosilca
e7c59e3adb Merge pull request #227 from ggouaillardet/rfc/coll_basic_neighbor
RFC/coll basic neighbor
2014-11-07 11:33:25 -05:00
Ralph Castain
a4c0019153 Remove the no-longer-used variables from the opal_hash_table_t definition, and their reference in the ompi debugger code. 2014-11-03 21:35:42 -08:00
Gilles Gouaillardet
64c18686b7 fix ompi_request_wait vs ompi_request_wait_all and
MPI_STATUS_IGNORE vs MPI_STATUSES_IGNORE
2014-11-04 12:16:30 +09:00
Andrew Friedley
273135dbc7 Don't open PSM context when run on single node
When running many ranks on a single node using PSM, it's possible to
exhaust the network hardware contexts (there are 16).  This patch checks
if only a single node is being used. If so, the 'ipath' component of PSM
is disabled and no hardware contexts are opened.
2014-11-03 07:18:16 -08:00
Ralph Castain
616f0894ce Add missing parens on values being passed to OPAL_THREAD_ADD32 2014-10-31 19:11:48 -07:00
Jeff Squyres
7a5b2e9b13 ob1: change an OPAL_UNLIKELY to OPAL_LIKELY
Per
924d39e415 (commitcomment-8378266),
this OPAN_UNLIKELY should really be OPAL_LIKELY.
2014-10-31 03:22:55 -07:00
Nathan Hjelm
672d96704c osc/rdma: fix regression introduced by eed7b45db5
The ompi_osc_signal_outgoing was moved from ompi_osc_rdma_frag_start to frag_send
which gave correct results for the bug reproducer but hangs with simple OSC
tests. Moved the ompi_osc_signal_outgoing back and it now passes all tests.

Closes #256
2014-10-30 23:16:11 -06:00
George Bosilca
924d39e415 Always OBJ_DESTRUCT the send request. 2014-10-30 01:28:50 -04:00
Gilles Gouaillardet
ed93c8787d ob1: add a destructor to mca_pml_ob1_recv_request_t
opal_mutex_t must be OBJ_DESTRUCTed in order to avoid
a memory leak (pthread_mutex_init allocates memory under
Cygwin, so pthread_mutex_destroy is mandatory)

Thanks to Marco Atzeri for reporting this issue
2014-10-29 13:30:29 +09:00
Gilles Gouaillardet
6af465f12d wrappers: add the $(EXEEXT) extension to the installed symbolic links 2014-10-28 16:43:36 +09:00
Gilles Gouaillardet
eef7590e58 wrappers: add the $(EXEEXT) extension to the installed symbolic links 2014-10-28 16:42:51 +09:00
Gilles Gouaillardet
a16c1e4418 mpiJava: call mca_base_var_register *after* MPI_Init
Thanks to Takahiro Kawashima and Siegmar Gross for pointing this issue
2014-10-27 14:41:54 +09:00
Jeff Squyres
37c2b9cf30 Merge pull request #241 from cniethammer/master
Add missing Fortran binding for Win_allocate.
2014-10-24 08:54:28 -04:00
Jeff Squyres
96c655ec67 man: add $COPYRIGHT$ token and emacs mode to all man pages 2014-10-23 17:21:54 -04:00
Jeff Squyres
ec7808cd27 man: remove stale Java bindings from MPI man pages
Fixes #244
2014-10-23 16:43:41 -04:00
Nathan Hjelm
23dd3af946 osc/rdma: use unsigned types for all counters
Some of the counters used by the "rdma" one-sided component are intended
to overflow. Since overflow behavior is undefined for signed integers in
C it is safer to use unsigned integers here.
2014-10-22 15:36:15 -06:00