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Граф коммитов

5772 Коммитов

Автор SHA1 Сообщение Дата
George Bosilca
5ff74babc6 Correctly use remote size where necessary. Completements the
patches for ticket #3105.

This commit was SVN r26490.
2012-05-24 13:41:51 +00:00
Jeff Squyres
4bda5da63a Similar to r26488, also update the param error checking for
REDUCE_SCATTER, SCATTERV, and GATHERV.  Thanks to the mpi4py community
for reporting the issue.

This commit was SVN r26489.

The following SVN revision numbers were found above:
  r26488 --> open-mpi/ompi@42793aa10f
2012-05-24 13:26:44 +00:00
Jeff Squyres
42793aa10f As reported by the mpi4py community (Bennet Fauber, Lisandro Dalcin,
Jonathan Dursi), fix a bug in the parameter verification of
MPI_ALLGATHERV: ensure to use the ''remote'' group size when checking
the recvcounts array.

This commit was SVN r26488.
2012-05-24 10:25:21 +00:00
Ralph Castain
31beff6362 Oops - if we don't want the Java bindings, then we really shouldn't be building them :-/
Also ensure we don't try to build them if no Java support was found, and error out if the user requests the bindings and we didn't find Java support.

Add a configure flag to skip the Java tests and just force-set the Java support to "disabled"

This commit was SVN r26484.
2012-05-23 19:51:27 +00:00
Matthias Jurenz
54d67f3957 Changes to VT:
- corrected Fortran MPI lib. name for OMPI 1.7 (-lmpi_f77 -> -lmpi_mpifh)

This commit was SVN r26477.
2012-05-23 09:06:22 +00:00
Matthias Jurenz
bf7e00b787 - corrected underlying compiler command for mpifort-vt (@FC@ -> vtf90)
- removed useless mpi<f77|f90>-vt-wrapper-data.txt

This commit was SVN r26474.
2012-05-23 08:55:00 +00:00
Nathan Hjelm
cdc3c87ba6 move pmi init/finalize into a common component
This commit was SVN r26470.
2012-05-22 15:15:39 +00:00
George Bosilca
e890a8379b Various minor cleanups.
This commit was SVN r26461.
2012-05-21 13:15:24 +00:00
Brian Barrett
25693363e9 * Fix internal accounting error regarding number of available credits
* Use a single MD covering all of address space for put transfers, rather
 than a per-send MD.

This commit was SVN r26458.
2012-05-20 23:42:26 +00:00
Vishwanath Venkatesan
8d4bb65bd4 Modifying the explicit operations to make it absolute
This commit was SVN r26451.
2012-05-18 21:43:34 +00:00
Vishwanath Venkatesan
cbad31cc88 1. Freeing the displs array after allgatherv to avoid segmentation faults in dynamic segmentation
2. Checking for 0 bytes datatypes  and sending only when data available to avoid 0 byte messages being sent and received. 
3. Changing timing extraction to support calculating, min, max and avg communication costs + min and avg write costs

This commit was SVN r26450.
2012-05-18 21:39:58 +00:00
Rolf vandeVaart
f8ace21366 Rename a few things for clarity. Add a stream.
This commit was SVN r26447.
2012-05-17 18:10:59 +00:00
Jeff Squyres
5fb48bafda Fixes trac:3093: when cleaning up, only reset items in the
ompi_mpi_errcodes array to NULL if the index is not MPI_UNDEFINED.
Thanks to Alexey Bayduraev for the patch.

This commit was SVN r26446.

The following Trac tickets were found above:
  Ticket 3093 --> https://svn.open-mpi.org/trac/ompi/ticket/3093
2012-05-16 15:26:32 +00:00
Jeff Squyres
2cf8b874d5 Oops -- forgot to include file_get_position_shared in r26439.
This commit was SVN r26442.

The following SVN revision numbers were found above:
  r26439 --> open-mpi/ompi@d74795b299
2012-05-15 19:51:15 +00:00
Rolf vandeVaart
c228bd2311 Fix broken compile. Keep in sync with sm btl.
This commit was SVN r26440.
2012-05-15 15:32:33 +00:00
Jeff Squyres
d74795b299 Fix #3094: do the correct cast for the right integer size.
This commit was SVN r26439.
2012-05-15 15:15:33 +00:00
Yevgeny Kliteynik
d59b8d5dc4 Fixing malformed error message
This commit was SVN r26434.
2012-05-12 21:13:42 +00:00
Mike Dubman
98c2c749fb fix define name to BTL_OPENIB_MALLOC_HOOKS_ENABLED
Thanks to Ludovic.Hablot@ext.bull.net  for pointing this out

This commit was SVN r26432.
2012-05-11 18:30:45 +00:00
Brian Barrett
2e52374847 * Split send and receive eq sizes
* Need to look at slot count before flowcontrol for sending to prevent
  race in restart
* Need to free pending request fragments when done with the request
* A number of branch prediction optimizations for error conditions

This commit was SVN r26430.
2012-05-10 21:43:48 +00:00
Yevgeny Kliteynik
244d66d95b Fixed FDR link speed details, added EDR.
This commit was SVN r26423.
2012-05-10 13:44:18 +00:00
Nathan Hjelm
91d99c6fef ugni: reserve memory domain descriptors (MDDs) for mailbox registration
This commit was SVN r26419.
2012-05-10 00:24:42 +00:00
Jeff Squyres
de4bbacd13 It turns out that we can't always include the hwloc OpenFabrics verbs
helper file, even if we find that the system has <infiniband/verbs.h>.
The reason is because there are some inline functions in that verbs
helper file that invoke ibv_* functions.  Some linkers (e.g., Solaris
Studio Compilers) will instantiate those static inline functions --
even if we don't use them -- and therefore we need to be able to
resolve the ibv_* symbols at link time.

But since -libverbs is only specified in places where we use other
ibv_* functions (e.g., the OpenFabrics-based BTLs), that means that
linking random executables can/will fail (e.g., orterun).

So instead, introduce a new #define: OPAL_HWLOC_WANT_VERBS_HELPER.  If
this macro is set to 1 before including opal/mca/hwloc/hwloc.h, then
you'll also get the hwloc OpenFabrics verbs helper header file (*if*
hwloc found <infiniband/verbs.h> -- otherwise, it'll #error).

This commit was SVN r26417.
2012-05-09 20:18:31 +00:00
Jeff Squyres
50bac6d4d7 Oops! This is a stale file (i.e., old implementation that isn't used anymore).
This commit was SVN r26415.
2012-05-09 13:35:39 +00:00
Ralph Castain
fd796cce0a Add an allocator tool for finding HDFS file locations and obtaining allocations for those nodes (supports both Hadoop 1 and 2). Split the Java support into two parts: detection of Java support and request for Java bindings.
This commit was SVN r26414.
2012-05-09 01:13:49 +00:00
Mike Dubman
cd17fee9a8 performance fix: openib use memalign for malloc
This commit was SVN r26409.
2012-05-08 20:42:09 +00:00
Jeff Squyres
3928a1ea42 Add missing AC_MSG_CHECKING (i.e., we were seeing a result message
without a corresponding "checking" message)

This commit was SVN r26408.
2012-05-08 17:20:09 +00:00
Jeff Squyres
e35ca05917 * Update svn:ignore to ignore example program
* Add "example" executable to CLEANFILES

This commit was SVN r26407.
2012-05-08 14:59:14 +00:00
Nathan Hjelm
903f9fac09 ugni: fixed buffered sends and code cleanup
This commit was SVN r26401.
2012-05-07 17:23:06 +00:00
Nathan Hjelm
49eda71ca0 ugni: fix invalid parameter with opal_pointer_array_init
This commit was SVN r26400.
2012-05-07 17:22:55 +00:00
Nathan Hjelm
584c457352 ugni: update smsg defaults and add parameter to control local completion queue size
This commit was SVN r26399.
2012-05-07 17:22:49 +00:00
Nathan Hjelm
bfcf67391a ugni: set fragment id from opal_pointer_array_add
This commit was SVN r26398.
2012-05-07 17:22:42 +00:00
Nathan Hjelm
b3dc726e9d ugni: don't create completion queues until add_procs
This commit was SVN r26397.
2012-05-07 17:22:35 +00:00
Nathan Hjelm
0e48ea1f65 vader: remove #include of headers that no longer exist
This commit was SVN r26396.
2012-05-07 17:22:28 +00:00
Nathan Hjelm
a32d4c648d ob1: rewind convertor after failed send
This commit was SVN r26395.
2012-05-07 17:22:22 +00:00
Jeff Squyres
43f3332929 Add an OMPI_Affinity_str() example program.
This commit was SVN r26393.
2012-05-07 15:19:23 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Mike Dubman
1b475523de add support for FDR speed
This commit was SVN r26385.
2012-05-06 05:53:05 +00:00
Nathan Hjelm
b6ae288a59 fix segfault when pml direct enabled
This commit was SVN r26371.
2012-05-01 23:12:41 +00:00
Brian Barrett
0ae2277796 Add a backoff mechanism for re-establishing communication
This commit was SVN r26366.
2012-05-01 15:53:00 +00:00
Brian Barrett
74ade8b181 need to order the pending list before we restart
This commit was SVN r26365.
2012-04-30 23:06:00 +00:00
Brian Barrett
5dec52af8d remove some now unneeded debugging
This commit was SVN r26364.
2012-04-30 22:50:52 +00:00
Brian Barrett
c654ee6afc * Use triggered operations for restart barrier as well
This commit was SVN r26363.
2012-04-30 22:48:10 +00:00
Brian Barrett
91a9973bde * Make flow control on by default
* Move alarm code back into a triggered operation

This commit was SVN r26362.
2012-04-30 22:25:40 +00:00
Jeff Squyres
a712fc4649 More Fortran-oriented typos / fixes in the script wrapper compiler
This commit was SVN r26357.
2012-04-27 21:20:24 +00:00
Brian Barrett
e6a0a1cf8a * Make sure to release all resources on failed send
* Avoid triggered ops until we get everything debugged
* Simplify flowctl interface a bit

This commit was SVN r26356.
2012-04-27 21:11:01 +00:00
Jeff Squyres
fff1612c04 * Forgot to update ompi-fort.pc.in
* Remove unused f77 reference in the script wrapper compiler

This commit was SVN r26355.
2012-04-27 20:05:09 +00:00
Jeff Squyres
80fa7cba29 Update VT for the new Fortran wrapper compiler nomenclature
This commit was SVN r26354.
2012-04-27 19:51:18 +00:00
Jeff Squyres
5efdfdfa09 * Make mpif77 and mpif90 be sym links to mpifort, just to drive the
point home that they're deprecated
 * Similarly, make mpif77-wrapper-data.txt be a sym link to
   mpifirt-wrapper-data.txt (ditto with mpif90)
 * Make new mpif77.1 and mpif90.1 man pages that say that they're
   deprecated; use mpifort instead

This commit was SVN r26353.
2012-04-27 19:35:23 +00:00
Jeff Squyres
94de69bd0c The F77 and F90 macros are no longer needed
This commit was SVN r26348.
2012-04-27 01:11:26 +00:00
Jeff Squyres
245812c34b * s/f77/fortran/gi in a lot of places
* Remove unused #defines in mpi.h.in
 * Add OMPI_PARAM_CHECK in mpi.h.in (so that we can check for it in tests)
 * Clean up some comments in mpif-common.h

This commit was SVN r26347.
2012-04-27 01:09:37 +00:00