data sieving has to occur for any offset provided that is larger
or equal zero for this implementation to work correctly.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
this commit fixes an issue observed with romio314 and the hdf5 1.10.x testsuite.
The ADIOI_Datatype_iscontig() routine in romio314/src/io_romio314_module.c
will now return for a datatype of size 0 that it is contiguous, even if the extent
of the datatype is non-zero. This avoids a segmentation fault observed in the
ADIOI_Flatten routine, and fixes this particular with the hdf5 1.10.x testsuite in
OpenMPI with romio314.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
This commit fixes#4795
- Fixed typo that sometimes causes deadlock in change of protocol.
- Redesigned out of sequence ordering and address the overflow case of
sequence number from uint16_t.
Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
-Updated ompi_mtl_ofi_progress to use an array to read CQ events up to a
threshold that can be set by the Open MPI User.
-Users can adjust the number of events that can be handled in the
ompi_mtl_ofi_progress by setting "--mca mtl_ofi_progress_event_cnt #".
-The default value for the the number of CQ events that can be read in a
single call to ofi progress is 100 which is an average
based off workload usecase anaylsis showing 70-128 as the range of
multiple events returned during ofi progress.
Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com>
This commit fixes a flaw in the progress function for libnbc. The
function was unconditionally taking a lock even if there are no
requests to process. This lock was showing up in vtune traces of
multi-threaded benchmarks.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
after performing the final OBJ_RELEASE on the request,
reset the user level variable to MPI_REQUEST_NULL.
Otherwise the c_2_f translation step in the fortran
interface fails.
Fixes issue #4807
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
This commit fixes a flaw in the eager limit check in pml/ob1. The
check was incorrectly checking if RDMA-only BTLs (BTLs without the
send flag) has a valid eager limit. This commit fixes the check by
adding an additional check for the send flag on the BTL module.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
The osc monitoring component needed to include other OSC components
header in order to be able tu access communicator through the
component specific ompi_osc_*_module_t structures. This commit remove
the dependency, and resolve the issue #4523.
Extend the common monitoring API.
* Now it's possible to translate from local rank to world rank from
both the communicator and the group.
* Remove useless hashtable as we directly use the w_group contained
in window structure.
Add automatic generation at config time.
The templates are expanded at configure time. It creates a new header
file that generates all the variables/functions needed. Adding this
during the autogen automagicaly generates for each of the available
modules the proper functions.
Only keep a generated argv-style array.
Following Jeff's advice, the configure.m4 file generate a simple array
of module variables to be iterated over to find the proper module.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
If component selection fails, then module->bases might be unallocated
when ompi_osc_sm_free() in invoked, so test it before trying to free()
module->bases[0].
Thanks Martin Binder for the report.
Refs open-mpi/ompi#4770
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
an erroneous return statement has creeped in commit 1885d99
which leads to some processes not resetting stripe_size
and stripe_count correctly. This can lead in 3.0.x to different
fcoll modules being selected. The impact is not that dramatic on
master and 3.1.x, but could lead to problems as well.
Fixes#4745
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
This fixes a regression in sockets provider which could return -EINTR value
from fi_cq_read() due to a syscall being interrupted. The error value is
currently interpreted as fatal condition. Relax the rule so that we can retry
fi_cq_read() operation.
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
In both cases we were comparing with the wrong size, it should be either
the number of local processes or the number of nodes, and not the size
of the communicator.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
ompio has the unique problem, that mca parameters set in the io/ompio component
have to be accessible from other frameworks as well. This is mostly done to avoid
a replication in the parameter names and to reduce the number of mca parameters that
and end-user has to worry about.
This commit introduces a generic function to retrieve ompio mca parameters, the function pointer
is stored on the file handle. It replaces two functions that used the same concept already for
one parameter each.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
This commit adds support for fetch-and-op atomics. This is needed
because and and or are irreversible operations so there needs to be a
way to get the old value atomically. These are also the only semantics
supported by C11 (there is not atomic_op_fetch, just
atomic_fetch_op). The old op-and-fetch atomics have been defined in
terms of fetch-and-op.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit renames the arithmetic atomic operations in opal to
indicate that they return the new value not the old value. This naming
differentiates these routines from new functions that return the old
value.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit eliminates the old opal_atomic_bool_cmpset functions. They
have been replaced by the opal_atomic_compare_exchange_strong
functions.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes the following bugs:
- Allow a btl to be used for communication if it can communicate with
all non-self peers and it supports global atomic visibility. In
this case CPU atomics can be used for self and the btl for any
other peer.
- It was possible to get into a state where different threads of an
MPI process could issue conflicting accumulate operations to a
remote peer. To eliminate this race we now update the peer flags
atomically.
- Queue up and re-issue put operations that failed during a BTL
callback. This can occur during an accumulate operation. This was
an unhandled error case.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Cleanup several places where abstraction violations crept into OMPI layer (direct reference of ORTE). Add some missing includes that were exposed by this change.
Note that this compiles, but I haven't tested it for execution yet. Handing it over to Noah Evans for completion
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Turns out there are edge cases where an MTL's isend
method may end up marking a send request complete prior
to returning to the CM code. The would end up causing
problems in the bsend path since the ompi_request_complete
would end up getting invoked a second time on this request.
This ended up causing segfaults, etc. in ompi_request_complete .
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
At least with some providers (sockets and GNI), the mprobe/mrecv
ofi mtl methods were incorrect. For these two providers at least
one must supply the original tag and mask bits used with the
prior FI_PEEK | FI_CLAIM request that had been used to probe for
the message.
These providers take a strict interpretation of the following sentence
from the libfabric fi_tagged man page:
```
Claimed messages can only be retrieved using a subsequent, paired receive operation with the FI_CLAIM flag set.
```
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
ompio has historically changed the WRONLY flag provided by the applicaiton
to RDWR to allow for the data sieving optimization within the two-phase I/O
fcoll component. This change did not have a performance impact
on regular UNIX file systems, but seems to hurt performance on NFS (and maybe Lustre?)
So provide an option that allows to keep the WRONLY option, and raise an error
if tha fcoll/two-phase would actually like to use the data sieving.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
of "unset".
mtl/psm2: Update some shadow mca parameters to use the default "unset".
mtl/psm2: Add new shadow parameter to allow specifying the service level.
Signed-off-by: Matias A Cabral <matias.a.cabral@intel.com>
gcc 5.2 complains:
```
mtl_ofi_component.c: In function ‘ompi_mtl_ofi_finalize’:
mtl_ofi_component.c:613:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (ret = fi_close((fid_t)ompi_mtl_ofi.fabric)) {
^
```
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Before this commit, the presence of usNIC devices -- which will
(currently) return no data when fi_getinfo() is queried for tagged
matching providers -- would cause an error message to be displayed.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
