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Граф коммитов

7646 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
96c655ec67 man: add $COPYRIGHT$ token and emacs mode to all man pages 2014-10-23 17:21:54 -04:00
Jeff Squyres
ec7808cd27 man: remove stale Java bindings from MPI man pages
Fixes #244
2014-10-23 16:43:41 -04:00
Nathan Hjelm
23dd3af946 osc/rdma: use unsigned types for all counters
Some of the counters used by the "rdma" one-sided component are intended
to overflow. Since overflow behavior is undefined for signed integers in
C it is safer to use unsigned integers here.
2014-10-22 15:36:15 -06:00
Ralph Castain
2ec59acac4 Silence a slew of warnings when --enable-memchecker is given. Reviewed by Jeff 2014-10-22 13:59:08 -07:00
Jeff Squyres
c22e1ae33b configury: new OPAL_SET_LIB_PREFIX/ORTE_SET_LIB_PREFIX macros
These two macros set the prefix for the OPAL and ORTE libraries,
respectively.  Specifically, the OPAL library will be named
libPREFIXopen-pal.la and the ORTE library will be named
libPREFIXopen-rte.la.

These macros must be called, even if the prefix argument is empty.

The intent is that Open MPI will call these macros with an empty
prefix, but other projects (such as ORCM) will call these macros with
a non-empty prefix.  For example, ORCM libraries can be named
liborcm-open-pal.la and liborcm-open-rte.la.

This scheme is necessary to allow running Open MPI applications under
systems that use their own versions of ORTE and OPAL.  For example,
when running MPI applications under ORTE, if the ORTE and OPAL
libraries between OMPI and ORCM are not identical (which, because they
are released at different times, are likely to be different), we need
to ensure that the OMPI applications link against their ORTE and OPAL
libraries, but the ORCM executables link against their ORTE and OPAL
libraries.
2014-10-22 10:32:19 -07:00
Jeff Squyres
01fd96bfa5 Revert "Provide a mechanism by which an upstream project can rename
the OPAL and ORTE libraries. This is required by projects such as ORCM
that have their own ORTE and OPAL libraries in order to avoid library
confusion. By renaming their version of the libraries, the OMPI
applications can correctly dynamically load the correct one for their
build."

This reverts commit 63f619f871.
2014-10-22 10:32:11 -07:00
yosefe
b4f569b4d4 yalla: address comments on #246 by @jsquires 2014-10-22 10:42:56 +03:00
yosefe
ce7c748e51 Add new PML yalla, which uses mxm directly to reduce overhead.
http://starwars.wikia.com/wiki/Ubed_Yalla
2014-10-21 16:08:24 +03:00
Jeff Squyres
952be15d7f MPI_Ibarrier.3in: add missing man page
Add MPI_Ibarrier.3in to reference MPI_Barrier.3, and update
MPI_Barrier.3in to include bindings for MPI_Ibarrier.  Slightly update
the text to be inclusive of the non-blocking case.

Fixes #242.
2014-10-20 05:26:53 -07:00
Nadezhda Kogteva
2bce929330 MTL MXM cleanup: unnecessary OMPI_MTL_MXM_CONNECT_ON_FIRST_COMM variable removed 2014-10-20 10:29:47 +03:00
bosilca
d819939841 Merge pull request #233 from ggouaillardet/rfc/coll_module_disable
Provide a symmetric behavior for the activation/deactivation of collective modules.
2014-10-16 09:22:04 -04:00
Gilles Gouaillardet
b5aea782ce Revert "Fix heterogeneous support"
Per the discussion at http://www.open-mpi.org/community/lists/devel/2014/10/16050.php

This reverts commit c9c5d4011b.
2014-10-16 12:24:38 +09:00
George Bosilca
7541c03b4c Mark all instances where atomic operations are used but their return value is unnecessary 2014-10-15 21:47:32 -04:00
Gilles Gouaillardet
c9c5d4011b Fix heterogeneous support
* redefine orte_process_name_t so it can be converted
  between host and network format as an opal_identifier_t
  aka uint64_t by the OPAL layer.
* correctly send OPAL_DSTORE_ARCH key
2014-10-15 17:19:13 +09:00
Edgar Gabriel
0219c87039 set the fs_ptr to NULL in case of an error, to avoid a malicious free on file_close. 2014-10-14 13:09:06 -05:00
Gilles Gouaillardet
e3f74aca1c Correctly mote the pointer back by the true_lb.
Fixes #231
2014-10-14 16:26:54 +09:00
Gilles Gouaillardet
0f983d5a4f add a disable function for coll module 2014-10-14 14:46:36 +09:00
Devendar Bureddy
7a6b4c36b0 HCOLL: Update the proc structure dereference
Update the proc structure dereference to reflect the new opal_proc_t
super field
2014-10-13 20:49:19 +03:00
Devendar Bureddy
b8d2a15be9 HCOLL: by default off 2014-10-13 20:49:09 +03:00
Vasily Filipov
a215a4831d MTL/MXM: disable "bulk_connect" by default. 2014-10-13 09:47:56 +03:00
Ralph Castain
63f619f871 Provide a mechanism by which an upstream project can rename the OPAL and ORTE libraries. This is required by projects such as ORCM that have their own ORTE and OPAL libraries in order to avoid library confusion. By renaming their version of the libraries, the OMPI applications can correctly dynamically load the correct one for their build. 2014-10-10 11:39:08 -07:00
Gilles Gouaillardet
8eb2d62919 coll/sm: fix an other memory leak 2014-10-10 19:54:45 +09:00
Gilles Gouaillardet
5d44a30111 coll/sm: fix minor memory leaks
port 4488.1.patch attached in #196 to master
2014-10-10 14:21:34 +09:00
Elena
c905fe9b78 pmix: removed pmix_base_direct modex mca parameter, renamed orte_full_modex_cutoff and ompi_hostname_cutoff to direct_modex_cutoff 2014-10-09 06:15:31 +02:00
Nathan Hjelm
eed7b45db5 osc/rdma: fix issue identified by Berk Hess
osc/rdma uses counters to determine if all messages have been received
before exiting synchronization calls. The problem is that the active
target counter is always increasing (never zeroed). If over 2^31-1
messages are sent this causes the counter to overflow (in itself this
isn't an error). This causes test/wait to return before the communication
is complete. There is an additional error in the use of the fragment
flush function. If PSCW synchronization is in use this function CAN NOT
be called unless a post message has arrived.

Relevant mailing list thread: http://www.open-mpi.org/community/lists/devel/2014/10/16016.php

This commit fixes both issues. Tested against MTT and issue reproducer.

Closes #224.
2014-10-07 11:45:22 -06:00
Ralph Castain
fd6a044b7f Cleanup some cruft resulting from the move of the btl's to opal. We had created the ability to delay modex operations, which included a need to delay retrieving hostname info for remote procs. This allowed us to not retrieve the modex info until first message unless required - the hostname is generally only required for debug and error messages.
Properly setup the opal_process_info structure early in the initialization procedure. Define the local hostname right at the beginning of opal_init so all parts of opal can use it. Overlay that during orte_init as the user may choose to remove fqdn and strip prefixes during that time. Setup the job_session_dir and other such info immediately when it becomes available during orte_init.
2014-10-03 16:02:57 -06:00
Jeff Squyres
413e775dbf version configury: make dist now works
Update the VERSION file scheme:

* Remove "want_repo_rev".
* Add "tarball_version".

All values are now always included (major, minor, release, greek,
repo_rev).  However, configure.ac now runs "opal_get_version.sh
... --tarball", which will return the value of tarball_version (if it
is non-empty) or the "full" version string (i.e.,
"major.minor.releasegreek").
2014-10-02 11:32:54 -07:00
Jeff Squyres
8468424f45 distscript: remove configure.params and autogen.subdirs kruft
Remove configure.params support: configure.params hasn't been used in
years.

Also remove autogen.subdirs support; those should really be handled by
their respective Makefile.am's.
2014-10-02 11:32:54 -07:00
Howard Pritchard
bb65835816 Fix iallgather problem with intercommunicators
A problem was found with the libnbc MPI_Iallgather
routine when using intercommunicators.  Special
thanks to Takahiro Kawashima(Fujitsu) for the patch
and a test case.  Verified master fails without the
patch and the test passes with the patch applied.

fixes #219
2014-10-02 11:45:17 -06:00
Ralph Castain
3263f721b6 Strip crlf line endings 2014-10-02 08:37:18 -07:00
Jeff Squyres
72704441a2 URLs: update URLs for GitHub 2014-10-01 14:44:09 -07:00
Ralph Castain
69328c30f5 Simplify the check for abort_print_stack by removing stale #ifdefined
cmr=v1.8.4:reviewer=jsquyres

This commit was SVN r32821.
2014-09-30 19:38:29 +00:00
Howard Pritchard
0f74467264 switch to ompi_mpi_thread_provided for ts check
Use ompi_mpi_thread_provided rather than opal_using_threads macro
to check whether MPI_THREAD_MULTIPLE is being used.

This commit was SVN r32815.
2014-09-29 22:20:35 +00:00
Howard Pritchard
7069f2361a disqualify coll ml for MPI_THREAD_MULTIPLE
This commit was SVN r32814.
2014-09-29 21:02:15 +00:00
Ralph Castain
eb95d6f892 ompi_info_get_bool returns "success" if the value isn't found, setting "flag" to false, but doesn't set the value of the param itself. So if you don't specify "blocking_fence" in MPI_Info, then the "blocking_fence" flag wasn't being set.
Initialize the blocking_fence flag to false as the code logic indicates that it should only be set if someone provides that flag.

Thanks to Lisandro Dalcin for reporting it

cmr=v1.8.4:reviewer=hjelmn

This commit was SVN r32812.
2014-09-29 17:21:28 +00:00
George Bosilca
49e79a9ade Fix the case of a single process.
This commit was SVN r32807.
2014-09-28 22:06:39 +00:00
Jeff Squyres
318e3b426a fortran: workaround Absoft linker issue
MTT found that the addition of the MPI_SIZEOF interfaces to mpif.h was
causing a linker error with the Absoft compiler.  Absoft is working on
a fix, but we can workaround the issue for now.  See comment in
Makefile.am in this commit for a lengthy explanation.

Refs trac:4917

This commit was SVN r32797.

The following Trac tickets were found above:
  Ticket 4917 --> https://svn.open-mpi.org/trac/ompi/ticket/4917
2014-09-25 21:07:46 +00:00
Nathan Hjelm
9c788ff940 coll/basic: fix segmentation fault in neighborhood collectives if the degree
of the topology is higher than the communicator size

It is possible to have a topology degree higher than the size of the communicator.
For example, a periodic cartesian communicator on MPI_COMM_SELF. This will leave
the neighborhood collectives with a request buffer that is too small. This commit
adds a call that will dynamically increase the size of the request buffer if it
is too small.

A better fix would be to create the topology *before* calling the coll_select
routine on a communicator. This will take some discussion and the solution will
not likely be ready anytime soon.

Thanks to Lisandro Dalcin for reporting this.

Original thread: http://www.open-mpi.org/community/lists/devel/2014/08/15713.php

cmr=v1.8.3:reviewer=jsquyres

This commit was SVN r32796.
2014-09-25 17:43:29 +00:00
Jeff Squyres
d13034d0b0 fortran: add configury to check for storage_size()
gfortran 4.8 does not support storage_size() on all relevant types
that we need.  So add a configure test to check and see if the
compiler's storage_size() intrinsic supports enough types for us to do
MPI_SIZEOF.

Also remove an accidentally redundant check for fortran INTERFACE.

Refs trac:4917

This commit was SVN r32790.

The following Trac tickets were found above:
  Ticket 4917 --> https://svn.open-mpi.org/trac/ompi/ticket/4917
2014-09-25 00:17:29 +00:00
Jeff Squyres
c9ea7f2732 fortran: ensure that sizeof_f08.h is built before mpi-f08.lo
mpi-f08.F90 includes sizeof_f08.h, so we need to add a Makefile
dependency to ensure that sizeof_f08.h is built first.

Refs trac:4917

This commit was SVN r32789.

The following Trac tickets were found above:
  Ticket 4917 --> https://svn.open-mpi.org/trac/ompi/ticket/4917
2014-09-24 23:59:18 +00:00
Ralph Castain
4024c8af9e Have to include the mpisync directory so the Makefile.in gets built - just don't build the binary and install it if timing isn't enabled
This commit was SVN r32781.
2014-09-24 01:18:21 +00:00
Edgar Gabriel
05c34946f7 implementation of non-blocking read/write operations through aio
functions for the posix module. Som interface changes for the fbtl were
necessary for that.

This commit was SVN r32777.
2014-09-23 21:27:57 +00:00
Artem Polyakov
f2e586980b Fix timing framework:
1. Fixes according to (http://www.open-mpi.org/community/lists/devel/2014/09/15869.php)
2. Force mpisync:rank0 to gather results. Now sync info is written by rank0 to the output file.
3. Improve mpirun_prof: 1) adopt to the environment (SLURM/TORQUE); 2) recognize some noteset-related mpirun options.

This commit was SVN r32772.
2014-09-23 12:59:54 +00:00
Ralph Castain
9c20940190 Remove mpif-sizeof.h during distclean
This commit was SVN r32771.
2014-09-21 14:26:19 +00:00
Ralph Castain
70896550bf Per input from Artem, update the copyrights on these files, ensuring to include all the licensing info for the files broght over from the mpiperf project.
This commit was SVN r32770.
2014-09-20 14:54:24 +00:00
Jeff Squyres
7f419dc5b6 fortran: set CLEANFILES properly
CLEANFILES was previously set; we need to use += to add to it.

refs trac:4917

This commit was SVN r32769.

The following Trac tickets were found above:
  Ticket 4917 --> https://svn.open-mpi.org/trac/ompi/ticket/4917
2014-09-20 10:43:49 +00:00
Jeff Squyres
040611556f fortran: don't complain about script args if we're not building fortran
refs trac:4917

This commit was SVN r32766.

The following Trac tickets were found above:
  Ticket 4917 --> https://svn.open-mpi.org/trac/ompi/ticket/4917
2014-09-20 01:22:40 +00:00
Jeff Squyres
d7eaca83fa Fortran: Fix MPI_SIZEOF. What a disaster. :-(
What started as a simple ticket ended up reaching the way up to the
MPI Forum.
    
It turns out that we are supposed to have MPI_SIZEOF for all Fortran
interfaces: mpif.h, the mpi module, and the mpi_f08 module.
    
It further turns out that to properly support MPI_SIZEOF, your Fortran
compiler *has* support the INTERFACE keyword and ISO_FORTRAN_ENV.  We
can't use "ignore TKR" functionality, because the whole point of
MPI_SIZEOF is that the implementation knows what type was passed to it
("ignore TKR" functionality, by definition, throws that information
away).  Hence, we have to have an MPI_SIZEOF interface+implementation
for all intrinsic types, kinds, and ranks.

This commit therefore adds a perl script that generates both the
interfaces and implementations for MPI_SIZEOF in each of mpif.h, the
mpi module, and mpi_f08 module (yay consolidation!).

The perl script uses the results of some new configure tests:

* check if the Fortran compiler supports the INTERFACE keyword
* check if the Fortran compiler supports ISO_FORTRAN_ENV
* find the max array rank (i.e., dimension) that the compiler supports

If the Fortran compiler supports both INTERFACE and ISO_FORTRAN_ENV,
then we'll build the MPI_SIZEOF interfaces.  If not, we'll skip
MPI_SIZEOF in mpif.h and the mpi module.  Note that we won't build the
mpi_f08 module -- to include the MPI_SIZEOF interfaces -- if the
Fortran compiler doesn't support INTERFACE, ISO_FORTRAN_ENV, and a
whole bunch of ther modern Fortran stuff.

Since MPI_SIZEOF interfaces are now generated by the perl script, this
commit also removes all the old MPI_SIZEOF implementations (which were
laden with a zillion #if blocks).

cmr=v1.8.3

This commit was SVN r32764.
2014-09-19 13:44:52 +00:00
Rolf vandeVaart
5c73101a72 Fix typo.
This commit was SVN r32755.
2014-09-18 13:58:54 +00:00
Vasily Filipov
c7c63fe73e COLL/TUNED: alltoall - return previous default values of algorithm choosing decision thresholds (were changed by r32735)
reviewed by miked
    cmr=v1.8.3:reviewer=ompi-rm1.8

This commit was SVN r32753.

The following SVN revision numbers were found above:
  r32735 --> open-mpi/ompi@5fecf65daf
2014-09-18 08:07:51 +00:00