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Ralph Castain
9c6c2fa61d Bring the v2.0.x debugger patch up to the master branch 
Ensure the personality gets set as specified by user, or defaults to
"ompi"

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-18 12:45:45 -08:00
Jijo Varghese
25e138ea1d error correction to the MPI_file operations thread safety lock 
Signed-off-by: Jijo Varghese <jijo733@gmail.com>
 2016-11-17 08:18:49 -05:00
Howard Pritchard
de3de131af pmix/cray: set some envars for MPI_INFO_ENV object 
Enhance the cray pmix component to set some OMPI internal
env. variables used to set some key/value pairs
on the MPI_INFO_ENV object.  This allows more of the
ompi-tests ibm unit tests to pass when using aprun/srun
direct launch and Cray PMI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-16 17:37:52 -06:00
Joshua Ladd
184148d26a Merge pull request #2431 from jladd-mlnx/topic/add_devie_cx5 
Add the ConnectX-5 device ID to openib BTL.
 2016-11-16 17:30:55 -05:00
Joshua Ladd
4907085c6f Add the ConnectX-5 device ID to openib BTL. 
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
 2016-11-16 21:42:37 +02:00
Edgar Gabriel
26e9210b15 io/ompio: change the default value of mca parameter 
change the default value of the mca_io_ompio_cycle_buffer_size parameter in order to avoid accidental truncation of a file for very large individual operations.
Thanks to @cniethammer for reporting it.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2016-11-15 10:09:43 -06:00
Gilles Gouaillardet
bd364d29f7 osc/sm: plug an other memory leak in ompi_osc_sm_free 
Fixes open-mpi/ompi@f1b473ee63

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-14 23:19:07 -07:00
Gilles Gouaillardet
f1b473ee63 osc/sm: plug a memory leak in ompi_osc_sm_free 
Thanks Joseph Schuchart for the report.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-14 22:22:43 -07:00
Gilles Gouaillardet
8ef538adeb Merge pull request #2398 from bosilca/topic/tcp_endpoints_mutex 
Protect the tcp_endpoints list from concurrent accesses.
 2016-11-14 22:13:29 -07:00
Joshua Ladd
9a79da729f Merge pull request #2354 from alex-mikheev/topic/oshmem_mkey_cache 
ikrit spml cleanup, mkey cache and assorted bug fixes
 2016-11-14 17:22:13 -05:00
Josh Hursey
bcc8230501 Merge pull request #2410 from jjhursey/topic/fix-dist-graph-coll 
topo/base: Fix module reference in collective call
 2016-11-14 14:29:00 -06:00
Howard Pritchard
fb5ccd3618 Merge pull request #2404 from osvegis/topic/java_paper 
Update java paper reference.
 2016-11-14 11:35:45 -07:00
Joshua Hursey
5a8b2f7431 topo/base: Fix module reference in collective call 
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
 2016-11-14 11:34:54 -06:00
Jeff Squyres
8d2c98e616 Merge pull request #2408 from hppritcha/manpage_typo 
fix minor typo in MPI_Comm_connect man page
 2016-11-14 09:38:38 -07:00
Howard Pritchard
3923bf8151 fix minor type in MPI_Comm_connect man page 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-14 05:52:45 -07:00
Gilles Gouaillardet
fc776e3fa5 coll: code cleanup 
- instead of coll_base_comm_get_reqs(2) for irecv/isend, use only
   one request allocated in the stack and do a irecv/send

 - instead of ompi_request_wait_all(2), simpy ompi_request_wait

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-13 22:35:33 -07:00
Gilles Gouaillardet
99d30353af coll: Don't allocate space for zero requests 
Refs #2402

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-13 22:20:58 -07:00
Oscar Vega-Gisbert
891272f556 Update java paper reference. 
Signed-off-by: Oscar Vega-Gisbert
 2016-11-13 22:05:18 +01:00
George Bosilca
725277bc26 Don't allocate space for the requests if the 
underlying topology has no neighbors.

This commit fixes issue #2402.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2016-11-12 18:01:09 -05:00
Howard Pritchard
aaf95c0713 Merge pull request #2403 from hppritcha/topic/fix_pmix_typoe 
pmix: fix a typo in a help file
 2016-11-12 14:14:28 -07:00
Howard Pritchard
703b464c03 pmix: fix a typo in a help file 
Fixes #2391

Thanks to @njoly for reporting

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-12 11:49:15 -07:00
Artem Polyakov
06a73da5ea ompi/init: always lazy-wait in ompi_mpi_init 
According to discussion in #2181 we don't need MCA
parameter any more.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2016-11-12 07:54:48 +07:00
George Bosilca
d0dddef53d
Protect the tcp_endpoints list from concurrent accesses. 
Thanks Gilles for your help.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2016-11-11 00:06:03 -05:00
Alex Mikheev
864904e8ab
oshmem: ucx: check status only if configured --with-oshmem-param-check 
Current standard says that behaviour in the case of error is undefined

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-10 11:29:03 +02:00
Alex Mikheev
48a7a0bbb9
oshmem: lock: call opal_progress only when busy waiting 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-10 11:27:24 +02:00
Alex Mikheev
bf61961f8b
oshmem: code review fixes 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-08 15:11:59 +02:00
Alex Mikheev
f133d9b6c8
oshmem: fixes comiplation errors in sshmem 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-08 15:11:07 +02:00
Gilles Gouaillardet
a49422fe84 btl/tcp: get rid of the MCA_BTL_TCP_SUPPORT_PROGRESS_THREAD macro 
since pthreads are now mandatory, the MCA_BTL_TCP_SUPPORT_PROGRESS_THREAD
is always true and hence can be safely removed

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-08 14:00:05 +09:00
Gilles Gouaillardet
11dc86f26b cleanup: always #include <pthread.h> 
pthreads are now mandatory, so there is no more need to

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-08 13:07:45 +09:00
Joshua Ladd
1bf238efb8 Merge pull request #2377 from alex-mikheev/topic/oshmem_f_13_fix 
oshmem: removes fortran shmem_put() because v1.3 does not have it
 2016-11-07 15:22:43 -05:00
Nysal Jan K A
3126a984a8 Merge pull request #2374 from AboorvaDevarajan/topic/powerpc_conf_update 
powerpc: Add support for powerpcle in timer/pstat.
 2016-11-07 18:03:50 +05:30
Alex Mikheev
18301429a0 oshmem: removes fortran shmem_put() because v1.3 does not have it 
picked from the 64a8f64afd351e37e7d80a080e495c082b56517c

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-07 13:47:57 +02:00
Aboorva Devarajan
fb8e074583 powerpc: Add support for powerpcle in timer/pstat. 
Signed-off-by: Aboorva Devarajan <abodevar@in.ibm.com>
 2016-11-07 02:35:44 -05:00
Gilles Gouaillardet
7a2894f1e0 event/libevent2022: cleanup dependencies to the embedded libevent lib 
configury force event/libevent2022 to be built as a static module,
so simplify Makefile.am

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-07 14:57:52 +09:00
Gilles Gouaillardet
023d18abae pml/ob1: mca_pml_ob1_recv must have memchecker mark the buffer as defined upon success 
this is generally done in mca_pml_ob1_recv_request_free(), but this is not invoked
in via mca_pml_ob1_recv(), so do it manually

Thanks Yvan Fournier for the report

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-07 13:10:15 +09:00
Alex Mikheev
ff5095e533 OSHMEM: adds support for mkey caching by spml 
It improves cpu cache hit ratio.

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:43 +02:00
Alex Mikheev
5c2f807ef8 OSHMEM: fixes verbosity log level cal 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:42 +02:00
Alex Mikheev
7caa736533 OSHMEM: fixes potential deadlock in shmem_lock() 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:42 +02:00
Alex Mikheev
defcc3ddc1 OSHMEM: spml ikrit: get/put request cleanup 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:41 +02:00
Alex Mikheev
61bd59a369 OSHMEM: fixes addr_acessible() 
check every possible transport

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:41 +02:00
Alex Mikheev
23c3dc8345 OSHMEM: mxm: optimize mxm_peer layout. 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:40 +02:00
Alex Mikheev
df74d549dc OSHMEM: spml ikrit: changes mxm_peers layout 
use single array instead of array of pointers

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:39 +02:00
Alex Mikheev
b5c7c7de78 OSHMEM: memheap: disable oob if allgather mkey exchange is used 
In this case there is no point to add another progress callback

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:39 +02:00
Alex Mikheev
0826e63363 OSHMEM: spml_ikrit: makes quiet wait for get_nbi requests 
shmem_quit() shall complete all outstanding get_nbi() requests

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:38 +02:00
Alex Mikheev
2f91ce7281 OSHMEM: mxm versions less than 2.0 are no longer supported 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:38 +02:00
Jeff Squyres
f11b0c7edf Merge pull request #2330 from jjhursey/topic/ibcast-non-uniform-dt-wa 
coll/libnbc: Work around for non-uniform data types in ibcast
 2016-11-05 10:26:04 -04:00
Mike Dubman
8c07a7fcdc Merge pull request #2357 from shamisp/topic/shmem_nbi_bugfix 
SPML/UCX: Fixing incorrect handling of UCX return codes
 2016-11-04 20:41:05 +02:00
rhc54
d221a3567b Merge pull request #2364 from rhc54/topic/static 
Since static ports are only used by ORTE if the runtime option is given,
 2016-11-04 07:57:18 -07:00
Ralph Castain
188880be3f Since static ports are only used by ORTE if the runtime option is given, 
there is no need for a configure option as well - so remove the
--enable-orte-static-ports configure option. When decoding the daemon
nidmap, mark new daemons as ALIVE by default - we will discover dead
ones as we go.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-04 05:01:42 -07:00
Gilles Gouaillardet
da0c873e14 oob/tcp: enhance debugging output 
display the hop node used to send a message
(if the message is sent directly, then the hop is the destination)

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-04 14:16:06 +09:00