ports/openmpi
ports/openmpi
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Автор SHA1 Сообщение Дата
Edgar Gabriel
56e11bfc97 initialize the stripe_size variable as well. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
26c57ef374 separate the size of the buffer used for the shuffle step and the size of the buffer used for a pwritev operation. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
39d5c8c281 further bug fixes silencing a compiler warning and fixing a memory overrun 2016-01-17 09:48:49 -06:00
Edgar Gabriel
2bcae84e11 further debugging 2016-01-17 09:48:49 -06:00
Edgar Gabriel
2bdd6ba17a correctly free some buffers, and ensure that lustre_stripe_size and stripe_count are always read from the file system. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
4bbb22bd0b add a new field to the ompio data structure (stripe_count) and set it correctly on pvfs2 and lustre. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
d282e94b67 add the new dynamic_gen2 component, designed to coexist for now with the original dynamic component 2016-01-17 09:48:49 -06:00
Jeff Squyres
60ffe713b8 common syms: whitelist bison-generated common symbols 
Bison generates some common symbols that we can't do anything about,
so whitelist them.
 2016-01-16 03:53:14 -08:00
Jeff Squyres
96f94f8228 fortran: whitelist deliberate common symbols 
The Fortran library has a number of common symbols that are
deliberate, so whitelist them.
 2016-01-16 03:53:14 -08:00
Joshua Ladd
18c5a21562 Fix typo in error handling flow. 2016-01-14 22:28:54 +02:00
Joshua Ladd
afa62d8ca1 Addressing reviewers' comments for https://github.com/open-mpi/ompi-release/pull/891 2016-01-14 19:22:27 +02:00
Tomislav Janjusic
3858bc8e62 Adding support for dynamic endpoint creation 
Signed-off-by: Tomislav Janjusic <tomislavj@mngx-apl-01.mtl.labs.mlnx>
Signed-off-by: Tomislavj Janjusic <tomislavj@mellanox.com>
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
 2016-01-12 22:17:03 +02:00
Nathan Hjelm
dd4d49cbbb Merge pull request #1278 from ggouaillardet/poc/osc_pt2pt 
osc/pt2pt: use two distinct "namespaces" for tags
 2016-01-12 09:49:31 -07:00
Nathan Hjelm
d26cc3fece ompi/group: do no decrement parent group proc pointers in destruct 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-01-11 12:56:11 -07:00
Edgar Gabriel
0a1b735eed use the actual preadv and pwritev functions if available. That's what the fbtl interfaces have been designed for. 2016-01-07 08:29:17 -06:00
Gilles Gouaillardet
4c1ea4a171 dpm: correctly handle procs_cutoff in ompi_dpm_connect_accept() 
this commit includes missing bits from open-mpi/ompi@213b2abde4
 2016-01-07 09:11:03 +09:00
Gilles Gouaillardet
213b2abde4 dpm: correctly handle procs_cutoff in ompi_dpm_connect_accept() 2016-01-06 16:21:13 +09:00
Edgar Gabriel
1b0b849994 remove the MCA parameter setting the number of hosts in PLFS, since the plfs_setxattr function used is causing linking problems with PLFS 2.5 
remove unused variables.
 2016-01-05 11:13:23 -06:00
Edgar Gabriel
7861a8c357 revise the logic in the fbtl plfs avoiding the memcpy operation 2016-01-05 10:04:46 -06:00
Edgar Gabriel
da309ac962 - use a unique pid for each process as requested by the API 
- sync the file before closing it
- use plfs_access() instead of access() before closing the file
 2016-01-05 10:04:12 -06:00
Gilles Gouaillardet
06ecdb6aa7 osc/pt2pt: use two distinct "namespaces" for tags 2016-01-05 16:57:37 +09:00
Gilles Gouaillardet
14fdf75944 fs/pvfs2: fix typo 
Thanks Dave Love for reporting this issue.

Fixes #1272
 2016-01-03 23:28:35 +09:00
Artem Polyakov
2abb2972ac Fix Mellanox copyrights with respect to the following PRs: 
* https://github.com/open-mpi/ompi/pull/1184
* https://github.com/open-mpi/ompi/pull/1188
* https://github.com/open-mpi/ompi/pull/1197
* https://github.com/open-mpi/ompi/pull/1202
* https://github.com/open-mpi/ompi/pull/1210
* https://github.com/open-mpi/ompi/pull/1216
* https://github.com/open-mpi/ompi/pull/1236
* https://github.com/open-mpi/ompi/pull/1237
* https://github.com/open-mpi/ompi/pull/1248
* https://github.com/open-mpi/ompi/pull/1260
* https://github.com/open-mpi/ompi/pull/1264
 2015-12-30 00:12:19 +06:00
Ralph Castain
810f2446b7 Add pmix120 component, update the error handling functions in the PMIx API. 
Update the configure logic for the new pmix120 component

ckpt

Get the pmix120 component to work - still not really registering or handling notifications, but infrastructure now operates

Cleanup some of the symbol scopes, and provide a more comprehensive rename.h file. Will pretty it up later - let's see how this works

Cleanup the rename files to use the pretty macros
 2015-12-28 23:15:44 +09:00
Gilles Gouaillardet
fec973efda configury: test portability 
replace test ... -o ... with test ... || test ...
and test ... -a ... with test ... && test ...
 2015-12-28 13:58:45 +09:00
Gilles Gouaillardet
47ab2fcb89 man: fix MPI_Neighbor_alltoall{v,w} prototypes 
Thanks Willem Vermin for bringing this to our attention
 2015-12-28 09:39:33 +09:00
Gilles Gouaillardet
ccc96ad204 fbtl/base: add missing #include "opal/util/output.h" 
Thanks Marco Atzeri for contributing the original patch
 2015-12-24 14:41:26 +09:00
Gilles Gouaillardet
cebde2a753 coll/tuned: add missing #include "opal/util/output.h" 
Thanks Marco Atzeri for contributing the original patch
 2015-12-24 14:41:17 +09:00
Gilles Gouaillardet
ad9693c604 pml/yalla: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
Gilles Gouaillardet
b38c17dbcb pml/cm: add missing #include <alloca.h> 
Thanks Paul Hargrove for reporting this issue
 2015-12-24 14:33:58 +09:00
Gilles Gouaillardet
071ae39a44 osc/rdma: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
Gilles Gouaillardet
77f199d1d7 coll/fca: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
Todd Kordenbrock
8a3660138e mtl-portals4: initialize endpoint nid/pid when using logical mapping 
When mtl-portals4 is configured for logical mapping, coll-portals4
must disqualify because it does not yet support logical mapping.
coll-portals4 looks for the endpoint pid to be zero which tells it
that mtl-portals4 is configured for logical mapping.  This commit
initializes the endpoint nid/pid to zero for logical mapping.
 2015-12-22 11:20:18 -06:00
Gilles Gouaillardet
e918d75fae java: try do dlopen libmpi with the full path 
Since OS X 10.11 (aka El Capitan) DYLD_LIBRARY_PATH is no more
propagated to children, so try to dlopen libmpi with the full path
using the directory of libmpi_java

Fixes open-mpi/ompi#1220

Thanks Alexander Daryin for reporting this
 2015-12-22 11:09:46 +09:00
rhc54
aa17bdf6e8 Merge pull request #1239 from rhc54/topic/cleanup 
Cleanup the warnings from the ompi layer when compiling optimized under Mac OSX
 2015-12-21 07:23:31 -08:00
Edgar Gabriel
46c20a1246 correctly set all variables storing information on the file pointer position to zero when setting the file view 2015-12-21 09:41:39 +09:00
George Bosilca
12dad8b37f Fix the missing resize of the returned type for 
the subarray and darray types.

Thanks Keith Bennett and Dan Garmann for reporting this issue

Fixes open-mpi/ompi#1191
 2015-12-21 09:41:30 +09:00
George Bosilca
6e6fd14a19 Fix indentation. 2015-12-20 03:15:19 -05:00
George Bosilca
c895eb7068 Remove extraneous declaration. 2015-12-19 01:34:48 -05:00
Ralph Castain
ac6289dca6 Cleanup the warnings from the ompi layer when compiling optimized under Mac OSX 
Cleanup per George's comments
 2015-12-17 17:39:15 -08:00
Nathan Hjelm
d0b4aa1f9a Merge pull request #1237 from artpol84/add_proc_deadlck_fix 
Fix add_proc deadlock.
 2015-12-17 12:09:40 -07:00
Artem Polyakov
6a791c3026 Fix add_proc deadlock. 2015-12-17 21:18:33 +06:00
igor.ivanov@itseez.com
041a6a9f53 ompi/pml: Fix warnings in yalla component 2015-12-16 16:22:30 +02:00
igor.ivanov@itseez.com
38c253c74c ompi/mtl: Fix warnings in mxm component 2015-12-16 16:22:29 +02:00
igor.ivanov@itseez.com
0a9956927a ompi/coll: Fix warnings in fca components 
warning: assignment from incompatible pointer type
 2015-12-16 16:22:16 +02:00
igor.ivanov@itseez.com
8f45d83d46 ompi/coll: Fix warnings in hcoll component 
warning: assignment from incompatible pointer type
 2015-12-16 14:52:29 +02:00
Ralph Castain
3a56f0d34b Create the pmix external component. Fix a few places where opal/util/argv.h were required when building with an external pmix (go figure). 
NOTE: Building with external pmix *requires* that you also build with external libevent and hwloc libraries. Detect this at configure and error out with large message if this requirement is violated.

Closes #1204  (replaces it)
Fixes #1064
 2015-12-15 15:26:13 -08:00
Nathan Hjelm
4992c22f4a Merge pull request #1224 from hjelmn/osc_fixes 
osc/rdma: fix bugs when running more than one process per node
 2015-12-15 14:01:01 -08:00
Nathan Hjelm
0de9445fc7 osc/rdma: fix bugs when running more than one process per node 
A previous commit updated the one-sided code to register the state
region only once. This created an issue when using the scratch lock
with fetching atomics. In this case on any rank that isn't local rank
0 the module->state_handle is NULL. This commit fixes the issue by
removing the scratch lock and using a fragment pointer instead.

Fixes open-mpi/ompi#1290

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-12-15 11:25:25 -07:00
Jeff Squyres
a2a5d650f9 Merge pull request #1180 from ggouaillardet/mpi_xxx_dup_fn 
fortran: add missing MPI_xxx_DUP_FN bindings
 2015-12-15 13:15:27 -05:00