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Граф коммитов

1180 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
c31e515db1 Since we've had problems recognizing the "special" Fortran constants,
add an explicit test case that checks for them.  It is necessary to
put this test function here because the OMPI_IS* macros are only
defined in this directory.

This commit was SVN r9195.
2006-03-04 13:23:19 +00:00
Jeff Squyres
adc6753fa9 Check for ARGVS_NULL, not ARGV_NULL
This commit was SVN r9194.
2006-03-04 13:22:12 +00:00
Rainer Keller
5627fb5627 - Get rid of compiler warning: init type to DT_MAX_PREDEFINED
and assert it is below when accessing ompi_ddt_basicDatatypes
 - datatype in ompi_ddt_pack_description_length is and will not be
   changed.

This commit was SVN r9193.
2006-03-04 13:16:04 +00:00
Tim Woodall
274ee03df6 work in progress
This commit was SVN r9192.
2006-03-04 00:36:16 +00:00
George Bosilca
ca116e3cf3 Where we create a duplicate data-type for the get_content MPI function we have to attach the
args from the old data-type. As this args are only read-only, I don't want to have several
copies around, so I add a reference count to them and simply attach them to the new
datatype. The args array now get freed only when the last reference dissapear.

This commit was SVN r9191.
2006-03-03 20:51:36 +00:00
Galen Shipman
4e430b0428 fix warnings, other misc
This commit was SVN r9190.
2006-03-03 04:01:10 +00:00
Rainer Keller
b8d1189091 - Use the actual _count parameter passed through the macro
This commit was SVN r9189.
2006-03-02 20:23:07 +00:00
Tim Woodall
8bf6ed7a36 - corrected locking in gm btl - gm api is not thread safe
- initial support for gm progress thread
- corrected threading issue in pml
- added polling progress for a configurable number of cycles to wait for threaded case

This commit was SVN r9188.
2006-03-02 00:39:07 +00:00
Galen Shipman
84d3055db5 Make sure everything is imediatly acked, even if not matched
Buffer first descriptor on the sendreq until postive ACK 
Set bytes delivered only after postive ACK, removed num_acks, etc, in general
trying to remove as much state as possible so that rolling things back isn't
such a nightmare 

This commit was SVN r9187.
2006-03-01 22:37:10 +00:00
Brian Barrett
1479a90b39 * assert() that endianness doesn't need to change if we are sending RDMA headers
around, since OB1 currently doesn't do the right thing there, but that should
  not happen in the near future because the R2 BML should not make any RDMA
  networks available between machines with different architectures
* Clean up the #ifs a little bit so that we don't do unneeded work when
  on big endian machines and heterogeneous support is disabled...

This commit was SVN r9184.
2006-02-28 19:54:46 +00:00
Rainer Keller
8568bb9892 - Allow MPI_ERRCODES_IGNORE when checking is on.
This commit was SVN r9180.
2006-02-28 10:16:42 +00:00
Brian Barrett
579e74290f * make gm wire-up endian safe
This commit was SVN r9179.
2006-02-28 02:03:46 +00:00
Galen Shipman
d9fd35d399 add acked items to datastructure,
fix compile issue. 

This commit was SVN r9178.
2006-02-28 01:07:35 +00:00
Galen Shipman
c6b4cc4417 Add data structure to track ACK's
This commit was SVN r9177.
2006-02-27 22:56:43 +00:00
Brian Barrett
e865a751bd * First whack at making the onesided component endian safe. Needs a endian-safe
datatype engine to really give it a whirl ;).

This commit was SVN r9176.
2006-02-27 18:47:00 +00:00
Galen Shipman
db6b1db548 use pml level datatype, someone else already cleaned this up in ob1.
This commit was SVN r9174.
2006-02-27 18:20:49 +00:00
Galen Shipman
2aa7b129a6 don't use ptl datatypes!
This commit was SVN r9173.
2006-02-27 18:07:38 +00:00
Brian Barrett
bfd49d248b * (hopefully) fix MPI_BOTTOM for portals, same way as oll the other RDMA btls from
eons ago...

This commit was SVN r9172.
2006-02-27 17:07:24 +00:00
Brian Barrett
9b19e3fef0 * remove some debugging output that shouldn't have been committed. Doh!
This commit was SVN r9171.
2006-02-27 16:23:52 +00:00
Rainer Keller
4b1194056f - Upon Finalize, also release the memory of predefined attributes.
This commit was SVN r9169.
2006-02-27 15:15:48 +00:00
Rainer Keller
5102571c02 - Get rid of the temporary reachability bitmap.
This commit was SVN r9163.
2006-02-27 11:06:01 +00:00
Jeff Squyres
4a0d9bd46f Turns out that $(MCA_io_romio_STATIC_LTLIBS) is a throwback to a
previous incarnation of the configure/build system and isn't defined
anymore.  So it can be removed.

This commit was SVN r9158.
2006-02-27 03:28:40 +00:00
Jeff Squyres
d068c1516c A few minor Makefile.am fixes
This commit was SVN r9157.
2006-02-27 03:18:57 +00:00
Brian Barrett
d45b2b77d1 * don't reset AR or RANLIB - libtool will do the "right thing" for us
This commit was SVN r9151.
2006-02-26 20:32:47 +00:00
Brian Barrett
285581dff2 More endian-related cleanups:
- moved hton64 and ntoh64 from the bunch of places it had been copied
    into one header file
  - properly set and use the btl_tcp's nbo option to put things in
    network byte order on the wire if both sides don't have the same
    endianness
  - Put the OB1 PML's headers (with a couple exceptions I need to discuss
    with Tim) in network byte order on the wire if both sides don't have
    the same endianness
  - since it was needed for the TCP BTL, move the orte_process_name_t
    HTON and NTOH macros from the TCP OOB to ns_types.h

This commit was SVN r9145.
2006-02-26 00:45:54 +00:00
Brian Barrett
88448cf40a * fix setting of remote proc architecture integers. We were setting all
procs architecture ints to the architecture of the last proc we got 
  in the list from the gpr, which is probably not what we intended to
  do...

This commit was SVN r9144.
2006-02-26 00:05:25 +00:00
Galen Shipman
05140c5f8f Rework the data reliability PML, still needs quite a bit of work,
working on creating a uniform retransmission mechanism otherwise each type of
send ends up needing a special case for retransmission. 
Removed NACK for individual transmissions, we just aggregate these and send
them at the end of a vfrag 

This commit was SVN r9141.
2006-02-24 17:08:14 +00:00
Brian Barrett
d5e0ea3590 * Post and Start should only check their epoch types for conflicts, otherwise
you can't be in a post and a start at the same time, and that is clearly
  legal to do
* Fix interptretation of when the epochs start for MPI_Fence.  Only start
  an epoch if communication actually occurs, otherwise it isn't actually
  an epoch.  I don't know who thought that wording in the MPI standard
  was a good idea, but can't change it now...

This commit was SVN r9139.
2006-02-24 13:04:15 +00:00
Brian Barrett
27b8430e8f * update MPI_ACCUMULATE to perform it's parameter checking based on what
MPI-2:6.3.4 says about reduction operations
* Have the point-to-point one-sided component spew a warning and return
  an error if a non-predefined datatype is used with an MPI_OP other
  than MPI_REPLACE.  Yes, this violates the MPI standard, but it's the
  best we can do until George and I implement support for figuring out
  where all the locations to update are..

This commit was SVN r9134.
2006-02-23 21:07:49 +00:00
George Bosilca
06def0b2d6 Not one .. but i. We're looking at the current position not at the first position
in the buffer ...

This commit was SVN r9132.
2006-02-23 15:59:17 +00:00
Brian Barrett
c544584387 * fix a race condition where a sendreq could be reused if it was originally
for a Get request and the reply came in before the local completion
  callback was fired from the btl.
* Silence some more debugging output for the moment

This commit was SVN r9130.
2006-02-23 06:02:10 +00:00
Brian Barrett
57b9c22adf * fix for last ptl fix... have to actually return a value...
This commit was SVN r9129.
2006-02-23 05:24:58 +00:00
George Bosilca
39252b764f Correctly compute the size of the datatype.
This commit was SVN r9127.
2006-02-23 04:30:52 +00:00
George Bosilca
79d25220b6 HAVE_MALLOPT is automatically detected by configure, so the correct
check is not against a value but against the define.

This commit was SVN r9126.
2006-02-23 04:30:24 +00:00
George Bosilca
0c1c650c91 Do not forget to commit the data-type once it is created from the
packed description.

This commit was SVN r9125.
2006-02-23 04:29:21 +00:00
George Bosilca
574c384ad4 This is the internal function so we should return the correct type. The
external function is type_size and it's used only at the MPI level as MPI
only support integers for the size.

This commit was SVN r9124.
2006-02-23 04:28:44 +00:00
Brian Barrett
2db1babd40 * complete the correct group
This commit was SVN r9123.
2006-02-23 02:42:39 +00:00
Jeff Squyres
628125599d Fix the TCL btl module endpoint matching during setup for the scenario
when running an MPI job spanning a node that has two TCP NICs and a
node that has one TCP NIC.  Previously, for the 2 NIC/module process,
we would return the first peer IP address if we couldn't find a subnet
match with any of the peer's published IP addresses -- this was to
support running OMPI across subnet boundaries.  Changed the behavior
to only do that behavior if the IP address we're trying to match is
public (i.e., not 10.x.y.z, 192.168.x.y, or 172.16.x.y) *and* any of
the remote peer's addresses are public (working on the assumption that
if we both have public addresses, they're routable to each other).

This definitely will not work in all scenarios, such as when we go to
WAN kinds of executions, and will need to be revisited at that time.

This commit was SVN r9119.
2006-02-23 02:02:19 +00:00
Brian Barrett
2eb76ff0cd * finish the TEG/UNIQ/PTL removal
This commit was SVN r9118.
2006-02-23 00:39:01 +00:00
Tim Woodall
08b3bad09d removed teg/ptls
This commit was SVN r9115.
2006-02-22 21:23:24 +00:00
Galen Shipman
e58b758031 standardize behavior of btl_alloc, if the size is larger than the max send
size, btl_alloc returns NULL. 

This commit was SVN r9114.
2006-02-22 17:37:59 +00:00
Brian Barrett
0d098c9d57 * after talking with galen, take into account we might truncate
This commit was SVN r9113.
2006-02-22 17:03:04 +00:00
Brian Barrett
765d2ffc29 * the self btl should set the segment size field on alloc like the other btls
* clean up duplicate free in long message accumulates that looks like it was
  a cut-n-paste error

This commit was SVN r9112.
2006-02-22 16:20:13 +00:00
Brian Barrett
63be889350 * include the correct file if we are doing the component bypass thing with ob1
This commit was SVN r9111.
2006-02-22 16:16:38 +00:00
Galen Shipman
cb06ed95e1 Allow registration cache to be limited both by number of entries as well as
total bytes registered. 
Currently this defaults to limiting the rcache to 256 entries or 1GB in total
registrations.

This commit was SVN r9110.
2006-02-22 14:35:47 +00:00
George Bosilca
805c45de29 Don't let a division by zero happens ...
This commit was SVN r9109.
2006-02-22 06:34:05 +00:00
Brian Barrett
44d13b0bab * add a bunch of (currently disabled) debugging output statements
* fix a silly bug where we weren't adding a long accumulate message to
  the pending long messages list, so we hung if a long accumulate
  occurred.  Still having some memory issues on one of the tests I'm
  running - need to move over to Linux and Valgrind after some sleep.

This commit was SVN r9108.
2006-02-22 05:14:34 +00:00
Galen Shipman
4612f70815 conditionally compile mpool_disable_sbrk if mallopt is present.
This commit was SVN r9107.
2006-02-21 22:27:41 +00:00
Jeff Squyres
8f7311becd Fix a few copy-n-paste errors: when an op is invalid, invoke the MPI
exception on the passed communicator, not MPI_COMM_WORLD.

This commit was SVN r9105.
2006-02-21 19:11:40 +00:00
Brian Barrett
889aeeddb2 * clean up the error checking a bit - user defined datatypes are allowed for
MPI_OP_REPLACE.  All other rules are basically the same as MPI_Reduce, so
  use that helper function.

This commit was SVN r9104.
2006-02-21 19:00:49 +00:00
Brian Barrett
eb7e722588 * clean up some of the debugging in the onesided code so that I can understand
what is going on
* Fix a dumb error where if a lock was released and another was pending, I
  would send a lock *request* to the queued process, rather than giving
  him the lock and sending him a lock *ack*.  Turns out requests and
  acks are different things :)

This commit was SVN r9103.
2006-02-21 18:43:28 +00:00
George Bosilca
9dd522e350 Correct the MPI_COMBINER_DUP case when we generate the data description. Now, we have an
optimized version here, where we pack only 2 integers instead of 6.

This commit was SVN r9102.
2006-02-21 17:16:30 +00:00
George Bosilca
3ac541a722 Remove some debugging code.
This commit was SVN r9101.
2006-02-21 15:17:50 +00:00
George Bosilca
d4ab61aec5 Homogeneously handle the one-sided features of the datatype.
This commit was SVN r9096.
2006-02-20 17:22:29 +00:00
George Bosilca
79be2dbcdb Anything else than void* cannot be print with %p ...
This commit was SVN r9094.
2006-02-19 16:34:15 +00:00
George Bosilca
a2a08b2282 Add the missing prototype and use the function (ompi_ddt_print_args)
in ompi_ddt_dump.

This commit was SVN r9093.
2006-02-18 18:15:54 +00:00
George Bosilca
19fb826caf Add a new function to print how a datatype was created based on the
MPI informations stored in args (the MPI_COMBINER stuff). This function
print only one level of information but it expand the name of the
datatype if the data is a predefined one.

This commit was SVN r9090.
2006-02-18 04:18:39 +00:00
George Bosilca
b62b4eb5b8 icc point out a lot of useless comparaison as well as some warnings about
inlined functions. Thie patch fix them all.

This commit was SVN r9082.
2006-02-17 05:15:59 +00:00
George Bosilca
f4d1bea50e Allow us to add zero length datatype ...
This commit was SVN r9079.
2006-02-17 05:07:28 +00:00
George Bosilca
1740ab1209 I just wanted to add a flag not to replace the old ones.
This commit was SVN r9076.
2006-02-16 22:39:06 +00:00
George Bosilca
09aa367563 When we create a convertor if the data size is zero mark it as completed. That avoid
problems with 0 length datatype used for pack/unpack.

This commit was SVN r9075.
2006-02-16 22:36:42 +00:00
George Bosilca
eef3b6b2ba A lot better with a comma inside ...
This commit was SVN r9070.
2006-02-16 21:13:17 +00:00
George Bosilca
7d9f1992f2 Print more information about the convertor in ompi_convertor_dump.
This commit was SVN r9069.
2006-02-16 21:01:29 +00:00
Brian Barrett
34c901dcb2 * fix race condition due to poorly placed memory barriers that was causing
crashes with the shared memory btl

This commit was SVN r9066.
2006-02-16 20:14:33 +00:00
Galen Shipman
0bc3cbf0db Corrections to pml_dr, now passes intel test suite (p2p_c).
Note, the checksums are not enabled currently, setting to zero as the
convertor is not ready for checksums yet. 

Also, we can't call unpack/pack on convertor with 0 bytes, otherwise it
crashes. 

This commit was SVN r9062.
2006-02-16 16:15:16 +00:00
George Bosilca
745ec1057f Remove the compilation warning.
This commit was SVN r9047.
2006-02-15 15:07:40 +00:00
Jeff Squyres
780154469b Prettyprint
This commit was SVN r9046.
2006-02-15 13:19:42 +00:00
Jeff Squyres
c674c165fd - Fix final check in TYPE_CREATE_F90_INTEGER
- Add more checks on the params to ensure that the user conformed to
  MPI-2 (i.e., can have MPI_UNDEFINED for p *or* r in the real/complex
  functions, but not both)
- Always return MPI_ERR_ARG, not MPI_ERR_OTHER -- seems to make a
  little more sense here, since any errors that are returned are
  solely because of the arguments that were passed into the function

This commit was SVN r9037.
2006-02-14 18:01:44 +00:00
Jeff Squyres
c4cc1528a7 Output this information during the build to help with user and
developer debugging.

This commit was SVN r9032.
2006-02-14 13:29:18 +00:00
Rainer Keller
0642809967 - Trivial change:
Function mca_pml_ob1_recv_request_fin is not used anywhere

This commit was SVN r9029.
2006-02-14 09:48:24 +00:00
Rainer Keller
45e3415bb5 - With the change from MCA_PML_OB1_FREE in r8945 to the send/recv
counterparts, the reset to MPI_REQUEST_NULL of the upper
   struct ompi_request_t was broken. Nightly mpi_test_suite
   failed, e.g.
   mpirun -np 2 ./mpi_test_suite -t "Ring Isend"

This commit was SVN r9028.

The following SVN revision numbers were found above:
  r8945 --> open-mpi/ompi@83f83e5730
2006-02-14 09:09:05 +00:00
Brian Barrett
352903290b * add some structured comments so that we can easily parse out the configurable
parts of mpi.h when making a fat binary

This commit was SVN r9025.
2006-02-14 04:44:00 +00:00
Galen Shipman
2b40758cf8 remove bug in turning on mem hooks automatically when leave pinned is
specified.

Turn mem hooks on automatically when sbrk is not disabled and
pml_ob1_leave_pinnned_pipeline is specified. 

This commit was SVN r9018.
2006-02-13 22:34:45 +00:00
George Bosilca
418ffa32ce Remove a strange warning from gcc 4.2:
ompi/mca/pml/ob1/pml_ob1_sendreq.h:210:96: warning: backslash and newline separated by space

This commit was SVN r9013.
2006-02-13 19:02:39 +00:00
Tim Woodall
609ad79982 change default for pipeline
This commit was SVN r9012.
2006-02-13 17:54:36 +00:00
Galen Shipman
dd00fb029f set size to bytes packed
This commit was SVN r9011.
2006-02-13 17:53:54 +00:00
Galen Shipman
fe05d1f238 use size passed,
This commit was SVN r9010.
2006-02-13 17:53:30 +00:00
Galen Shipman
fca3a36bc0 if data is contiguous need_buffers should return 0, not 1
This commit was SVN r9009.
2006-02-13 17:49:31 +00:00
George Bosilca
bde56ce528 Cleanup the convertor construct function. Do not set any useless values, instead rely on the
calls to convertor_create and convertor_prepare to finish setting up the correct values for
the convertor.

This commit was SVN r9008.
2006-02-13 17:03:36 +00:00
George Bosilca
bbe79f7f0e Performance tunning. The OB! progress functions just call the BML one. Thus, setting the
progress function in the mca_pml to the BML progress one, avoid having a cascade of
call to the progress function and speed up a little bit the execution.

This commit was SVN r9007.
2006-02-13 16:28:25 +00:00
Brian Barrett
08747dcaf8 * Throttle the number of incoming receives so that we don't overrun our receive
event queue and lose receive messages.

This commit was SVN r9006.
2006-02-13 15:59:54 +00:00
Brian Barrett
20d06e889e * revert out some of the attempts to better use the Portals 3.3.2-2 user-space
run-time support, as it appears to be doing bad things to memory.  Update
  the hack to get the local nid to match the recent TCP nal changes, and
  update the P3RT api useage

This commit was SVN r9005.
2006-02-13 15:41:00 +00:00
Brian Barrett
ef83e692cc * fix a bad fix from the Open MPI developers meeting. I didn't add proper
support for Fortran 90 module flags in the wrapper compilers when I 
  re-wrote them to be less project-specific.  Re-add that support and drop
   the ugly install in include hack I had done.

This commit was SVN r9003.
2006-02-13 02:39:32 +00:00
George Bosilca
ecc3e00362 Various cleanups.
This commit was SVN r9002.
2006-02-12 21:36:07 +00:00
George Bosilca
8b525ef21b Include the count when computing the remote size.
This commit was SVN r9001.
2006-02-12 21:34:55 +00:00
George Bosilca
13170eec52 Make sure all datatype files have the correct updated copyright information.
This commit was SVN r8998.
2006-02-12 21:03:01 +00:00
George Bosilca
25020f58c1 Correct the MPI_Indexed bug. Actually it can be triggered by any type of
data, if the packed data is contiguous and the unpacked one is not. The
problem was that the unpack function did not update the bConverted value
to the real number of bytes extracted from the iovecs, but limit the update
to the number of bytes moved into the user buffers. So, if there were some
bytes copied in the internal pending buffer, they were lost because the next
convertor instead of using the correct bConverted (with the total number of
bytes) has only the transfered number. The result of this bug, is a shift to
left by few bytes of the values in the user buffers.
Add a protection against such kind of errors in the new_position.c.

This commit was SVN r8997.
2006-02-12 20:19:22 +00:00
Brian Barrett
4a061c89ed * put all the CPPFLAGS Open MPI adds to ROMIO in one place, and set them
as needed for the modified source tree layout.  Since we don't include
  anything but mpi.h in the ROMIO build, we don't need most of the flags
  anyway...

This commit was SVN r8995.
2006-02-12 18:32:21 +00:00
Jeff Squyres
bc47a24bee Bring the f90 configuration up to speed with the f77 configuration
changes.  The two Big Changes are elegance (much more re-use of code
rather than cut-n-pasting the same code over and over and over and...)
and enabling cross-compilation for F77 and F90 (because we actually
have to *run* some compiled F77 and F90 programs for some of the
tests, which obviously won't work in a cross-compilation environment
-- so enable the use of config.cache to load such values in
cross-compiling environments).

This commit was SVN r8991.
2006-02-12 15:11:36 +00:00
Jeff Squyres
e089f91a72 Remove the sym links before we try to create them, otherwise if you
run "make install" twice in a row (or some other variant), you'll get
an error.

This commit was SVN r8990.
2006-02-12 14:16:19 +00:00
Brian Barrett
913890f534 * forgot to add new directories into DIST_SUBDIRS as well as SUBDIRS, so
tarballs were missing some directories.

This commit was SVN r8989.
2006-02-12 07:06:38 +00:00
Brian Barrett
566a050c23 Next step in the project split, mainly source code re-arranging
- move files out of toplevel include/ and etc/, moving it into the
    sub-projects
  - rather than including config headers with <project>/include, 
    have them as <project>
  - require all headers to be included with a project prefix, with
    the exception of the config headers ({opal,orte,ompi}_config.h
    mpi.h, and mpif.h)

This commit was SVN r8985.
2006-02-12 01:33:29 +00:00
Jeff Squyres
d5e58c13dc Add the bml and rcache to the list of frameworks in ompi_info
This commit was SVN r8978.
2006-02-11 00:14:44 +00:00
George Bosilca
3171cc1aee Remove unused variable.
This commit was SVN r8977.
2006-02-11 00:13:09 +00:00
Andrew Friedley
b37e18916f Many different things, the big ones:
- Start filling in the progress function, focusing on connection establishment.
 - Initialize udapl mpool and free lists
 - Create/destroy a protection zone with each IA
 - Misc organization as I learn how things work

This commit was SVN r8969.
2006-02-10 21:49:15 +00:00
George Bosilca
a4619b1a11 Remove a compilation warning from the RDMA engine.
Correct the problem introduced by the commit 8933 (thanks Tim). In order to avoid to much
trafic on the bus we do not compute the bytes_delivered (require an atomic size_t add)
we have to set it in the begining or otherwise we will report the wrong count in the
MPI status.

This commit was SVN r8968.
2006-02-10 21:14:08 +00:00
George Bosilca
9c1547373d Match the latest changes in the datatype engine.
This commit was SVN r8967.
2006-02-10 21:06:15 +00:00
George Bosilca
c9e83658dd Datatype engine went into a "slim-fast" treatement. That's only the first stage ...
This commit was SVN r8965.
2006-02-10 20:56:30 +00:00
George Bosilca
0376dce258 Keep track of the ompi_proc in the comm_proc. This avoid a lookup for the processor and
simplify the execution path. The peer proc (ompi_proc_t) is set at the matching stage.

This commit was SVN r8962.
2006-02-10 18:55:43 +00:00
Galen Shipman
44fe6c3896 allow pml pipeline to cache memory registrations
to enable this (off by default) use: 
-mca pml_ob1_leave_pinned_pipeline 1 
!!AND!!!
-mca mpool_use_mem_hooks 1 

This commit was SVN r8949.
2006-02-09 15:49:51 +00:00