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Jeff Squyres
8cc39f7192 NEWS: sync with v1.10.1 bullets 2015-10-08 07:44:09 -07:00
Ryan Grant
8134ba76f1 Merge pull request #998 from tkordenbrock/topic/fix.incorrect.ompi_proc.cast 
Looks good to me.

mtl-portals4: fix bug in the Portals4 get_peer family
 2015-10-08 08:38:16 -06:00
Ryan Grant
4addab8e16 Merge pull request #997 from tkordenbrock/topic/fix.debug.msg 
coll-portals4: allreduce: remove extra %d from error message.
 2015-10-08 08:36:30 -06:00
Nathan Hjelm
90db00e37f Merge pull request #996 from hjelmn/openib_progress_thread 
btl/openib: remove extra threads
 2015-10-08 07:31:27 -06:00
Todd Kordenbrock
88d79efd9f mtl-portals4: fix bug in the Portals4 get_peer family 
The Portals4 get_peer family incorrectly cast the ompi_proc_t to
ptl_process_t and returned that as the peer.  The ptl_process_t is
actually found in the endpoint array.  This commit fixes the
Portals4 get_peer family to return the dereferenced endpoint
pointer.
 2015-10-08 07:57:48 -05:00
Todd Kordenbrock
f33b0c1cdf coll-portals4: allreduce: remove extra %d from error message. 2015-10-08 07:57:33 -05:00
Jeff Squyres
1929bb02ff Merge pull request #993 from miked-mellanox/topic/platform_patches_arg 
BUILD: add --with-platform-patches-dir=DIR
 2015-10-08 07:00:55 -05:00
rhc54
232f97a80c Merge pull request #968 from JohnWestlund/master 
simplify use of sockaddr* structs to work around buffer overflow warning
 2015-10-07 17:42:19 -07:00
Gilles Gouaillardet
d7e6daf75f configury: do not build usempif08 is PMPI is not built 
this is a revamp of commit open-mpi/ompi@2d1a8fa920
Thanks Jeff for the review !
 2015-10-08 09:04:07 +09:00
Rolf vandeVaart
fffb05be0b Merge pull request #994 from rolfv/pr/add-volatile-where-needed 
Add volatile to workaround GCC optimization bug in 4.9.2 and greater.
 2015-10-07 19:15:22 -04:00
Nathan Hjelm
b8af310efa btl/openib: remove extra threads 
This commit removes the service and async event threads from the
openib btl. Both threads are replaced by opal progress thread
support. The run_in_main function is now supported by allocating an
event and adding it to the sync event base. This ensures that the
requested function is called as part of opal_progress.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-07 12:30:41 -06:00
Rolf vandeVaart
952d01db70 Add volatile to workaround GCC optimization bug in 4.9.2 and greater. Thanks to oere for fix 2015-10-07 12:56:58 -04:00
Mike Dubman
a120fe4a14 BUILD: add --with-platform-patches-dir=DIR flag to configure 
allow to override default patch dir to arbitrary.
 2015-10-07 16:18:48 +03:00
Mike Dubman
c391df7536 Merge pull request #992 from miked-mellanox/topic/platform_patches_arg 
BUILD - patch_dir can be specified in configure
 2015-10-07 13:19:31 +03:00
Mike Dubman
eb883ae98f BUILD: allow specifying platform patch_dir from cmd line 
before:

patch_dir=$PLATFORM.patches

after

patch_dir can be specified as ./configure <....> patch_dir=/usr/local/site_ompi_v_x.y_patches/
if not specified - use default
 2015-10-07 09:31:49 +03:00
Mike Dubman
75c7e89c61 Merge pull request #991 from bureddy/master 
HCOLL: Enable alltoall interface
 2015-10-07 09:01:02 +03:00
Devendar Bureddy
72f98ccf6c HCOLL: Enable alltoall interface 2015-10-07 08:00:04 +03:00
Howard Pritchard
7c935a2206 Merge pull request #983 from hppritcha/topic/alps_odls_fix 
odls/alps: close the directory
 2015-10-06 14:12:07 -06:00
Howard Pritchard
d899320574 odls/alps: close the directory 
Close the /proc/self/fd dir after checking for open fds.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-10-06 11:13:44 -07:00
Nathan Hjelm
c124fd4a0b Merge pull request #977 from hjelmn/ompi_win_free 
win: free windows in ompi_win_finalize
 2015-10-06 10:11:28 -06:00
Nathan Hjelm
d7205f90f1 win: free windows in ompi_win_finalize 
This commit frees any outstanding windows at ompi_win_finalize. If
ompi_debug_show_handle_leaks is set a warning message is printed out
indicating that a window is still allocated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-06 09:25:51 -06:00
Nathan Hjelm
81757d411a Merge pull request #955 from hjelmn/mpool_update 
opal/mpool: add support for passing access flags to register
 2015-10-06 08:42:56 -06:00
annu13
5787e9248f cleaned up debug stmts 2015-10-06 06:25:36 -07:00
annu13
30ba00e05d sync with master 2015-10-06 06:04:54 -07:00
annu13
4c371ea6d7 Merge remote-tracking branch 'upstream/master' 2015-10-06 06:03:37 -07:00
Edagr Gabriel
8af80cd02c update the interfaces of the sharedfp addproc component to match the changes made in the const commit. 2015-10-06 07:54:38 -05:00
Mike Dubman
258884749e Merge pull request #976 from igor-ivanov/pr/oshmem-man.1 
oshmem: Add man.1 pages for oshmem tools
 2015-10-06 08:17:00 +03:00
Gilles Gouaillardet
de8de65b07 coll/tuned: remove unused prototypes from coll_tuned.h 2015-10-06 09:07:48 +09:00
Nathan Hjelm
59aa93e1b6 opal/mpool: add support for passing access flags to register 
This commit adds a access_flags argument to the mpool registration
function. This flag indicates what kind of access is being requested:
local write, remote read, remote write, and remote atomic. The values
of the registration access flags in the btl are tied to the new flags
in the mpool. All mpools have been updated to include the new argument
but only the grdma and udreg mpools have been updated to make use of
the access flags. In both mpools existing registrations are checked
for sufficient access before being returned. If a registration does
not contain sufficient access it is marked as invalid and a new
registration is generated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-05 13:53:55 -06:00
Mike Dubman
260905b9f4 Merge pull request #972 from miked-mellanox/topic/master_patches_from_mlnx_platform 
Add in-finalize indicator, fca fall back to prev barrier if in-finalize
 2015-10-05 20:37:59 +03:00
Rolf vandeVaart
81346949b8 Merge pull request #975 from rolfv/pr/fix-6.0-compile-error 
Fix typo that caused compile error
 2015-10-05 13:11:35 -04:00
Nathan Hjelm
e0d9e6553f mpool: mpi_show_mpi_alloc_mem_leaks don't print out message if there are no leaks 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-05 10:48:56 -06:00
Rolf vandeVaart
fc83400123 Fix typo that caused compile error 2015-10-05 11:44:40 -04:00
Igor Ivanov
d379873443 oshmem: Add man.1 pages for oshmem tools 
This changes add man pages for oshrun, oshcc and oshfort as well as
depricated shmemrun, shmemcc and shmemfort.
 2015-10-05 15:41:28 +03:00
Gilles Gouaillardet
2d1a8fa920 fortran: do not build the f08 bindings if PMPI is not built 2015-10-05 09:43:46 +09:00
Mike Dubman
588dcc3e5c Merge pull request #971 from open-mpi/revert-961-topic/platform_log_msgs 
Revert "BUILD: log applied patches into config.log"
 2015-10-04 09:43:23 +03:00
Mike Dubman
e8d7373b14 COLL/FCA: revert to prev barrier if called from finalize 
FCA barrier may not complete if FCA progress is not called periodically.
PMI/PMI2 API that can be used in rte barrier has no provision for calling
external progress function.

So it is possible that during finalize some ranks will be stuck
in fca barrier while others are in PMI barrier.
 2015-10-04 09:40:19 +03:00
Mike Dubman
5bebed45eb OMPI: set "in finalize" indicator in finalize flow 2015-10-04 09:39:37 +03:00
Mike Dubman
e280be3dff Revert "BUILD: log applied patches into config.log" 2015-10-04 08:12:05 +03:00
Nathan Hjelm
d579a07383 Merge pull request #970 from hjelmn/more_coverity 
fcoll/two_phase: fix new coverity errors
 2015-10-03 08:27:41 -06:00
Jeff Squyres
d539c01c0f NEWS: Sync v1.10.1 bullets with release branch 2015-10-03 05:45:05 -04:00
Nathan Hjelm
5122327727 fcoll/two_phase: fix new coverity errors 
Fix CID 1325467: use after free

Remove extra free of aggregator_list.

Fix CID 1325466: resource leak

Fix typo in prior coverity fix.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-10-02 21:38:31 -06:00
Nathan Hjelm
c99a8a55ba Merge pull request #967 from hjelmn/libnbc_fix 
op: allow user operations in ompi_3buff_op_reduce
 2015-10-02 18:48:32 -06:00
annu13
6f37c0e3e8 sync with PMIX master 2015-10-02 17:25:48 -07:00
annu13
7434c47626 sync with PMIX master 2015-10-02 17:17:48 -07:00
John Westlund
044fea8df7 re-order != comparison, OBJ_RELEASE mca_oob_tcp_addr_t on failure 2015-10-02 15:59:48 -07:00
John Westlund
6bfaa925ec simplify use of sockaddr* structs to work around buffer overflow warning 2015-10-02 14:26:52 -07:00
Nathan Hjelm
57d3b83297 op: allow user operations in ompi_3buff_op_reduce 
This commit allows user operations to be used in the
ompi_3buff_op_reduce function. This fixes an issue identified in:

http://www.open-mpi.org/community/lists/devel/2014/04/14586.php

and

http://www.open-mpi.org/community/lists/users/2015/10/27769.php

The fix is to copy source1 into the target then call the user op
function with source2 and target.

Fixes #966

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-02 10:35:21 -06:00
Nathan Hjelm
eb79edff33 Merge pull request #963 from hjelmn/ompi_coverity 
fcoll/two_phase: fix coverity errors
 2015-10-02 10:22:24 -06:00
Devendar Bureddy
dc982085c6 Merge pull request #964 from bureddy/master 
HCOLL: Add alltoallv interface
 2015-10-02 07:48:16 -07:00