1
1
Граф коммитов

1166 Коммитов

Автор SHA1 Сообщение Дата
KAWASHIMA Takahiro
519ddd9ae9 man: Insert missing error classes & Fix incorrect error codes. 2015-10-19 13:46:02 +09:00
Jeff Squyres
40b4d5d74d help-mpi-api.txt: remove now-stale help messages 2015-10-15 12:39:16 -04:00
Jeff Squyres
338257a2f4 man: update man pages for Init*/Finalize*
Update language surrounding initialization and finalization in
MPI_Init[_thread], MPI_Initialized, MPI_Finalize, and MPI_Finalized.
2015-10-15 12:39:16 -04:00
Jeff Squyres
f5ad90c920 init/finalize: extensions
Proposed extensions for Open MPI:

- If MPI_INITLIZED is invoked and MPI is only partially initialized,
  wait until MPI is fully initialized before returning.
- If MPI_FINALIZED is invoked and MPI is only partially finalized,
  wait until MPI is fully finalized before returning.
- If the ompi_mpix_allow_multi_init MCA param is true, allow MPI_INIT
  and MPI_INIT_THREAD to be invoked multiple times without error (MPI
  will be safely initialized only the first time it is invoked).
2015-10-15 12:39:15 -04:00
KAWASHIMA Takahiro
66a8bc9e45 fortran/mpif-h: Insert missing weak symbols & Fix incorrect symbol names. 2015-10-15 11:58:41 +09:00
Jeff Squyres
aceb1ebb47 Merge pull request #1026 from hjelmn/static_mutex
opal static mutex initializers
2015-10-14 22:10:51 -04:00
Jeff Squyres
2b9c9f3093 Fortran: add missing MPI_AINT in mpi_f08 module 2015-10-14 17:32:01 -07:00
Nathan Hjelm
7f7ff8d851 mpit: use opal static mutex initializer
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-14 16:08:42 -06:00
Jeff Squyres
ac25505e03 mpi: infrastructure to gracefully disable MPI dyn procs
Add ompi_mpi_dynamics_disable() function to disable MPI dynamic
process functionality (i.e., such that if MPI_COMM_SPAWN/etc. are
invoked, you'll get a show_help error explaining that MPI dynamic
process functionality is disabled in this environment -- instead of a
potentially-cryptic network or hardware error).

Fixes #984
2015-10-14 13:42:56 -07:00
Jeff Squyres
a4adee5329 dynamics: fix OPAL_CR_EXIT_LIBRARY()
Noticed that these were wrong will working on a different pull
request.  Submit these fixes indepdent of other changes, just to keep
things separated.
2015-10-13 10:57:33 -07:00
Jeff Squyres
71dfba9ed3 Merge pull request #845 from ggouaillardet/topic/pmpi_vs_mpi
Remove --enable-mpi-profile configure option (i.e., always build PMPI bindings)
2015-10-13 12:13:10 -04:00
Gilles Gouaillardet
3e469662ad trim man pages if no c++/f08/fortran 2015-10-13 10:21:42 +09:00
Gilles Gouaillardet
66c30b2721 Add Fortran 2008 syntax to the manpages 2015-10-13 09:21:45 +09:00
Gilles Gouaillardet
291a464efb configury: remove the --enable-mpi-profiling option
and directly call the PMPI_* symbols from C and Fortran bindings
2015-10-13 08:52:35 +09:00
Gilles Gouaillardet
40b57ff347 fortran: only generate the correct symbol based on the compiler mangling. 2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
53b952dc2b oshmem: invoke the C PMPI_* subroutines instead of the MPI_* ones
when profiling is built.
This prevents oshmem subroutines from being wrapped twice by third
party tools (e.g. once in oshmem and once in MPI)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php

Thanks to Bert Wesarg for bringing this to our attention
2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
16d65a2762 fortran/mpif-h: invoke the C PMPI_* subroutines instead of the MPI_* ones
when profiling is built.
This prevents Fortran subroutines from being wrapped twice by third
party tools (e.g. once in Fortran and once in C)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php
2015-10-13 08:52:02 +09:00
Nathan Hjelm
fbaa79835f ompi/man: fix typos in formatting
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-09-29 23:32:44 -06:00
Gilles Gouaillardet
97b9d12c58 man: fix a typo in MPI_Ibarrier C prototype
Thanks Harald Servat for reporting this
2015-09-28 16:54:20 +09:00
Nathan Hjelm
20d5c07638 Fix CID 1312113: Logically dead code
Removed logically dead code.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-09-27 09:46:06 -06:00
Nathan Hjelm
5553dba0c4 Merge pull request #919 from hjelmn/accumulate_ops
ompi/win: save value of accumulate_ops info key on window
2015-09-22 10:50:50 -06:00
Nathan Hjelm
6751409c32 ompi/win: save value of accumulate_ops info key on window
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-21 16:37:29 -06:00
Nathan Hjelm
d6724f2828 ompi: add missing man pages
This commit adds man pages for the MPI_Win_allocate and MPI_Win_allocated_shared
MPI-3 functions. The man page for MPI_Win_create has also been updated to
indicate support for the same_size and same_disp_unit info keys

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-21 16:21:28 -06:00
Gilles Gouaillardet
fe351f6801 io: do not cast way the const modifier when this is not necessary
update the io framework and mpi c bindings
2015-09-09 09:18:58 +09:00
Gilles Gouaillardet
e01bac962f coll: do not cast way the const modifier when this is not necessary
update the coll framework and mpi c bindings
2015-09-09 09:18:57 +09:00
Gilles Gouaillardet
6e6a3e965c pml: do not cast way the const modifier when this is not necessary
update the pml framework and mpi c bindings
2015-09-09 09:18:57 +09:00
Gilles Gouaillardet
43ef261d46 topo: do not cast way the const modifier when this is not necessary
update the topo framework and mpi c bindings
2015-09-09 09:18:57 +09:00
Ralph Castain
e6add86e4f Deal with connect/accept between two jobs from different mpirun's. Somewhat optimize connect/accept by using MPI bcast to distribute the participants instead of another PMIx lookup. Cleanup some Coverity issues. 2015-09-07 09:19:24 -07:00
Ralph Castain
f6948c2bb4 Sync with PMIx master 43e45c3. Get multi-node publish/lookup/unpublish working 2015-09-04 10:07:17 -07:00
Ralph Castain
a772b46c15 Bring the MPI_Publish and friends online 2015-09-02 12:04:07 -07:00
Jeff Squyres
596557e61b Fortran: update a comment
Split the list of subroutines into cases #1 and #2, just for clarity.
2015-08-31 03:10:09 -07:00
Gilles Gouaillardet
21642a2407 osc: do not cast way the const modifier when this is not necessary
update the osc framework and mpi c bindings
2015-08-31 10:34:05 +09:00
Gilles Gouaillardet
21b1e7f8c5 mpi conformance: fix prototypes
- MPI_Compare_and_swap
- MPI_Fetch_and_op
- MPI_Raccumulate
- MPI_Win_detach

Thanks to Michael Knobloch and Takahiro Kawashima for bringing this
to our attention
2015-08-31 10:34:05 +09:00
Ralph Castain
cf6137b530 Integrate PMIx 1.0 with OMPI.
Bring Slurm PMI-1 component online
Bring the s2 component online

Little cleanup - let the various PMIx modules set the process name during init, and then just raise it up to the ORTE level. Required as the different PMI environments all pass the jobid in different ways.

Bring the OMPI pubsub/pmi component online

Get comm_spawn working again

Ensure we always provide a cpuset, even if it is NULL

pmix/cray: adjust cray pmix component for pmix

Make changes so cray pmix can work within the integrated
ompi/pmix framework.

Bring singletons back online. Implement the comm_spawn operation using pmix - not tested yet

Cleanup comm_spawn - procs now starting, error in connect_accept

Complete integration
2015-08-29 16:04:10 -07:00
Zhi Ming Wang
c8d4751ae6 Correct the wrong "Name Binding" of functions 2015-08-28 03:28:09 -04:00
Nathan Hjelm
f451876058 Merge pull request #825 from hjelmn/white_space_purge
periodic trailing whitespace purge
2015-08-25 19:23:52 -06:00
Jeff Squyres
2cfdeff38d Fortran: these lines should not be commented out 2015-08-25 07:13:52 -07:00
Jeff Squyres
42a761e052 Fortran: remove dead Makefile.am code 2015-08-25 07:13:34 -07:00
Nathan Hjelm
156ce6af21 periodic whitespace purge
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-08-24 09:32:33 -06:00
Howard Pritchard
eb25c006eb Merge pull request #822 from nrgraham23/java_garbage_collection_bugfix
Java garbage collection bugfix
2015-08-22 14:58:01 -06:00
Jeff Squyres
0f3a3e52ba gen-mpi-sizeof: minor style change
Suggested by Paul Hargrove.
2015-08-22 03:07:44 -07:00
Jeff Squyres
9f345bd22f fortran: moar fixes for the Fortran MPI_SIZEOF debacle
Ensure to define ompi/pompi versions for platforms that don't have
weak symbols.  Also make fortran/mpif-h/profile build a separate
sizeof library, just like fortran/mpifh-h does.
2015-08-21 14:35:18 -07:00
Jeff Squyres
ede9fc17b0 gen-mpi-sizeof.pl: don't generate sub for headers
We only need the dummy subroutine when we're generating the body of a
file -- not when we're generating headers.
2015-08-20 14:24:45 -07:00
Jeff Squyres
edf485716e gen-mpi-sizeof.pl: restore execute permission
Somehow the "x" bit got reset in the last commit.
2015-08-20 13:31:02 -07:00
--quiet
d5763a8288 fortran sizeof: ensure mpi_sizeof*f90 is not empty
Per http://www.open-mpi.org/community/lists/devel/2015/08/17775.php,
some compilers don't like it when there's a .f90 file that only
contains comments (and no actual Fortran code).  So if OMPI determines
that the Fortran compiler does not support enough Fortran mojo to
support MPI_SIZEOF, generate at least one dummy Fortran subroutine
that can be compiled in an otherwise barren Fortran landscape that is
devoid of life and hope.
2015-08-20 13:01:14 -07:00
Nathaniel Graham
97422de7a8 Code cleanup
Removing the ArrayList import which is no longer needed.
2015-08-20 12:47:01 -06:00
Nathaniel Graham
d363b5d832 Java garbage collection bugfix
This pull request adds an arraylist of type Buffer to
the Request class.  Whenever a request object is created
that has associated buffers, the buffers should be added
to this array list so the java garbage collector does
not dispose of the buffers prematurely.

This is a more robust expansion on the idea first proposed by
@ggouaillardet

Fixes #369

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-08-19 17:45:26 -06:00
Gilles Gouaillardet
99730f798b fortran: (try to) align C objects used by Fortran
Fortran uses objects (ompi_f08_mpi_comm_world, mpi_fortran_bottom,, ...) that are defined in C.
Some compilers have different requirements on how these objects should be aligned.
Smaller alignment in C can lead to several confusing warnings from the linker, so try to
find the alignment expected by Fortran compiler, and inform the C compiler.
2015-08-18 14:01:20 +09:00
Jeff Squyres
e57861b0a5 fortran: only have one _LIBADD
Accidentally added a 2nd _LIBADD in a prior commit.  This commit
merges them back into a single _LIBADD.
2015-08-17 06:52:54 -07:00
Nathan Hjelm
dbfd6e6e5e Merge pull request #807 from hjelmn/win_update
Window updates
2015-08-15 12:33:40 -06:00