ports/openmpi
ports/openmpi
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Автор SHA1 Сообщение Дата
Tim Woodall
da1e4a1292 - since we append new registrations to the end of the list, 
need to remove old ones from the front
- call deregister to actually remove items from the cache/mru
list and deregister the memory (if not being used)

This commit was SVN r7476.
 2005-09-21 23:25:16 +00:00
Tim Woodall
9791c066e8 dont attempt to pin the receive buffer if data has 
already been received

This commit was SVN r7475.
 2005-09-21 23:23:47 +00:00
Tim Woodall
1b7b220089 cleanup refcount 
This commit was SVN r7462.
 2005-09-21 20:04:56 +00:00
Tim Woodall
a74ca0062a reductions to initial memory footprint 
This commit was SVN r7455.
 2005-09-21 19:10:56 +00:00
Galen Shipman
4296e723c9 default free_lists to smaller size.. 
This commit was SVN r7454.
 2005-09-21 18:55:07 +00:00
Galen Shipman
96ab5a6bd3 we can be in WAITING_ACK state without a race if the OOB ack is "slower" than 
the scheduling of queued IB send operations. 

This commit was SVN r7452.
 2005-09-21 16:47:08 +00:00
Tim Woodall
782e5b21cc cleanup 
This commit was SVN r7451.
 2005-09-21 15:34:45 +00:00
Tim Woodall
a49a442fe4 cleanup refcount logic 
This commit was SVN r7450.
 2005-09-21 15:32:27 +00:00
Tim Woodall
0ee34051f8 debug asserts 
This commit was SVN r7449.
 2005-09-21 15:30:17 +00:00
Tim Woodall
1b73d3856e possible race condition - set endpoint state before sending connect ack 
This commit was SVN r7448.
 2005-09-20 21:03:55 +00:00
David Daniel
e4985c2a07 Moving totalview spin to the very end of mpi_init 
This commit was SVN r7444.
 2005-09-20 15:22:15 +00:00
Brian Barrett
fd9901f683 * shell of a portals PML, properly ompi_ignored for most of the world... 
This commit was SVN r7437.
 2005-09-20 08:07:08 +00:00
Brian Barrett
d81726833e * Add memory barriers for shared memory. Rich and I think we got them 
all and the Intel tests pass slightly oversubscribed.

This commit was SVN r7431.
 2005-09-19 16:28:25 +00:00
Tim Woodall
aeb5bc3f57 still need to cleanup/revise the template for mpool changes 
This commit was SVN r7425.
 2005-09-19 14:34:24 +00:00
George Bosilca
b70230858b Correct the misnaming problem in the GM PTL. 
This commit was SVN r7424.
 2005-09-19 10:34:06 +00:00
Galen Shipman
6499eb3976 init the return code.. 
This commit was SVN r7423.
 2005-09-18 14:25:30 +00:00
George Bosilca
97673b45d1 Remove the last bad symbol from the GM PTL. 
This commit was SVN r7422.
 2005-09-18 12:52:37 +00:00
George Bosilca
b5cb27c006 The self should use self named files. 
This commit was SVN r7421.
 2005-09-18 12:37:15 +00:00
George Bosilca
a7db1763e2 Cleanups ... 
This commit was SVN r7420.
 2005-09-18 12:34:29 +00:00
Jeff Squyres
d67c31f238 Remove useless compiler warnings. 
This commit was SVN r7418.
 2005-09-17 10:54:48 +00:00
Jeff Squyres
f9a1e14f65 Per suggestion from our friendly Libtool developer friends, add proper 
dependencies for liborte and libompi (i.e., make liborte depend on
libopal, and make libmpi depend on liborte)

This commit was SVN r7417.
 2005-09-17 10:45:46 +00:00
Galen Shipman
b8cb6e1c64 modified mpool module to contain flags - used to determine if the mpool will 
be used in MPI_Alloc_mem operations. Note that we found an interesting bug in
which if memory was allocated by the sm mpool (via mmap) and then registered
via the mvapi mpool, the registration would fail on certain systems. 

Added mca param mpool_base_use_mem_hooks, set to 1 to enable the memory hooks
so that memory is deregistered if the user frees it behind our back. This is
only useful if the mca param mpi_leave_pinned is also set to 1. Otherwise all
registrations are deregistered within the MPI library or via
MPI_Free_buf. After testing we should probably set both mpi_leave_pinned and
mpool_base_use_mem_hooks to default to 1. 

This commit was SVN r7415.
 2005-09-16 22:22:03 +00:00
Brian Barrett
c87babb565 * if start_rank == end_rank, there doesn't seem to be a requirement that 
stride == 1, and the Intel tests explicitly test the case with
  strides != 1, expecting them to work

This commit was SVN r7411.
 2005-09-16 18:44:21 +00:00
Galen Shipman
808b2c1c53 threaded build fix for btl_gm.. 
This commit was SVN r7409.
 2005-09-16 17:18:15 +00:00
Jeff Squyres
2b82224a4f Remove superflous ; (actually causes an error in some cases) 
This commit was SVN r7405.
 2005-09-16 12:27:25 +00:00
Jeff Squyres
10d02b2110 Make sure to copy the right amount out of the temp buffer. 
This commit was SVN r7400.
 2005-09-15 22:06:36 +00:00
Galen Shipman
22dac4983c fix mca_mpool_base_free to use new rcache 
This commit was SVN r7398.
 2005-09-15 21:09:07 +00:00
Jeff Squyres
15d0a95202 - Remove extra whitespace from Makefile.am's from when we removed 
Makefile.options
- Sample in each of the three projects of how to link againt the
  relevant libraries so that when components are loaded into a parent
  process' space, we don't rely on the libopal/liborte/libmpi symbols
  being in the parent's public symbol namespace -- instead,
  dynamically link to the relevant libraries, allowing the dynamic
  linker to pull those libraries in at run-time, if needed

This commit was SVN r7397.
 2005-09-15 20:56:18 +00:00
Jeff Squyres
46bed32fc6 While double-checking the order of SUBDIRS (ensuring dynamic-mca is 
after "."), remove some whitespace left over from when we removed
Makefile.options.

This commit was SVN r7393.
 2005-09-15 20:46:29 +00:00
Tim Woodall
9b96ecf9b1 correction for rdma case - currently rdma entire message 
This commit was SVN r7392.
 2005-09-15 19:36:56 +00:00
Jeff Squyres
3ecfe02b83 - Properly handle MPI_IN_PLACE 
- Return MPI_ERR_ARG, not EINVAL

This commit was SVN r7391.
 2005-09-15 19:33:54 +00:00
Tim Woodall
6ae2ae4d1a - code cleanup 
- correct mpi semantics

This commit was SVN r7390.
 2005-09-15 18:47:59 +00:00
Jeff Squyres
2c1186cd19 Fix up the offsets for the non-root gatherv in the IN_PLACE case. 
This commit was SVN r7389.
 2005-09-15 18:21:18 +00:00
George Bosilca
789d49d613 Activate thread support ... at least at the MPI level. 
This commit was SVN r7386.
 2005-09-15 15:44:12 +00:00
George Bosilca
32cdc551af No more warnings in the GM PTL. 
This commit was SVN r7385.
 2005-09-15 15:29:31 +00:00
Jeff Squyres
7ca22d9416 - Correct to use the right offsets 
- Copy back to the right location in the non-rank-0-IN_PLACE case

This commit was SVN r7384.
 2005-09-15 15:15:23 +00:00
Jeff Squyres
406f0575eb - Remove useless error check 
- Ensure err is set to MPI_SUCCESS on the IN_PLACE case

This commit was SVN r7383.
 2005-09-15 15:14:00 +00:00
Jeff Squyres
cbfb062a7d Fix silly mistake for IN_PLACE handling in scan 
This commit was SVN r7380.
 2005-09-15 12:47:17 +00:00
Jeff Squyres
068b9c72a2 Bunches of changes 
- remove redundant OBJ_CONSTRUCT in bcast
- fix up some macros in coll_sm.h
- check to ensure that if there are too many processes in the
  communicator (i.e., if we couldn't fit a flag for each of them in
  the control segment), then fail selection
- setup the in_use flags properly
- adapt to new mpool API
- first working copy of reduce -- not tree-baed (but still
  NUMA-aware), and only processes in order from process 0 to process
  N-1 -- do not have a tree-based and/or commutative version yet
  (i.e., process the results in whatever order they arrive)

Reduce now passes the new ibm reduce_big.c test.  Woo hoo!  Time to
declare success for the evening (and run the intel test tomorrow).

This commit was SVN r7379.
 2005-09-15 02:18:16 +00:00
George Bosilca
ec621c2145 That was a bad*bad typo. To compute the flags I have to use & not |. 
In the case where the user want to roll-back a convertor we should first rewind the
convertor to the beginning and then move it to the requested position. Otherwise the
logic do roll-back a convertor in an optimized way is really difficult. BTW, in terms of
performances one would prefer to have 2 convertors and play with position inside, than
just having one and roll it back.

This commit was SVN r7378.
 2005-09-14 23:32:18 +00:00
George Bosilca
fdfd966aad On the last position on the conversion stack in the displacement field we should have the 
relative displacement not the absolute one. This relative displacement will be addesd to the
absolute one in order to compute the correct position on the source (or destination) buffer.

This commit was SVN r7377.
 2005-09-14 23:29:27 +00:00
Tim Woodall
31d392af95 correct name 
This commit was SVN r7376.
 2005-09-14 22:35:58 +00:00
Tim Woodall
6ffa947a85 dont try and use convertor if not initialized 
This commit was SVN r7375.
 2005-09-14 22:03:52 +00:00
Tim Woodall
9279e4f882 use sync send to ensure message is received before exiting 
This commit was SVN r7374.
 2005-09-14 21:28:17 +00:00
Tim Woodall
d190e6a315 handle losing a connection 
This commit was SVN r7373.
 2005-09-14 21:27:30 +00:00
Tim Woodall
c25fb5dab0 - fixed issue w/ btl send-in-place option that was affecting tcp 
- reduced size of match header by an additional 4 bytes to 16 bytes
- corrections for buffered send (work in progress)

This commit was SVN r7371.
 2005-09-14 17:08:08 +00:00
Brian Barrett
e98415eb7b * make tree compile on OS X 
This commit was SVN r7370.
 2005-09-14 15:52:42 +00:00
Galen Shipman
8b146cec13 Callback shouldn't be static as it is used in more than one .c file. 
This commit was SVN r7369.
 2005-09-14 13:27:09 +00:00
Jeff Squyres
5365ae84b9 Remove extra variable. Still working with George / Edgar on 
reduce_log_intra().

This commit was SVN r7368.
 2005-09-14 11:52:20 +00:00
Jeff Squyres
5456d3444f - Add missing header files 
- Use new #include file scheme

This commit was SVN r7367.
 2005-09-14 09:37:20 +00:00
Galen Shipman
f0b1ea52bc if all else fails in prepare_src,, pack 
init the rdma_pending list in ob1

This commit was SVN r7366.
 2005-09-14 04:41:33 +00:00
Galen Shipman
940a2494a2 init the find, release, and retain funcs on the mpool, otherwise segfault.. 
This commit was SVN r7365.
 2005-09-14 02:59:31 +00:00
Jeff Squyres
e0c47dd0bc Fix for allreduce in IN_PLACE cases 
This commit was SVN r7364.
 2005-09-14 02:42:32 +00:00
Jeff Squyres
0fcd682c4c MPI-2 7.3.3 description of MPI_Allgatherv is wrong -- can't just have 
all processes call MPI_Gatherv(MPI_IN_PLACE...) because IN_PLACE is
only allowed to be used at the root.  Non-root processes must use
their receive buf as the send buf.

This commit was SVN r7363.
 2005-09-14 02:21:33 +00:00
Galen Shipman
b3db6fc2d1 Add code for mem_free hooks, commented out right now as there are performance 
issues. 
In PML-OB1 - fix for sync-sends of zero length. 

This commit was SVN r7362.
 2005-09-14 02:17:04 +00:00
Jeff Squyres
b8f4f88ccc Ignore sendtype/sendcount if MPI_IN_PLACE 
This commit was SVN r7361.
 2005-09-14 01:44:55 +00:00
Galen Shipman
272153cd47 fix threaded build issues with rcache. 
This commit was SVN r7358.
 2005-09-13 22:06:44 +00:00
George Bosilca
3e35dbee30 Add a helper function to find out if a couple datatype & count represent a contiguous 
memory layout.

This commit was SVN r7357.
 2005-09-13 21:59:34 +00:00
Graham Fagg
0f75381e56 Added various barrier routines: recursive doubling, bruck, double ring, 2proc etc 
all pass tests

This commit was SVN r7355.
 2005-09-13 20:58:42 +00:00
Brian Barrett
1290b8eed2 * some debugging to figure out why get isn't working on RS 
This commit was SVN r7354.
 2005-09-13 20:52:56 +00:00
George Bosilca
a5871ffc23 Report back the correct position when the caller use ompi_convertor_set_position. That should 
fix Tim's problems.

This commit was SVN r7353.
 2005-09-13 20:29:50 +00:00
George Bosilca
ad0c0cdc03 Make the GM btl compile again. There were just some typos. 
This commit was SVN r7352.
 2005-09-13 20:19:21 +00:00
Jeff Squyres
5dca18f903 First cut of handling MPI_IN_PLACE: 
- added relevant logic for everything except
  mca_coll_basic_reduce_log_intra() -- need some help from George /
  Edgar on this one...
- replaced ompi_ddt_sndrcv() with ompi_ddt_copy_content_same_ddt()
  where relevant
- removed some "if (size > 1)" conditionals, because the self coll
  module will always be chosen for collectives where size==1

Waiting for BA's tests to check the validity of this IN_PLACE stuff.
We'll see how it goes!

This commit was SVN r7351.
 2005-09-13 20:06:54 +00:00
Jeff Squyres
bd95f5d474 Arrgh -- check the right argument for IN_PLACE. 
This commit was SVN r7350.
 2005-09-13 19:56:43 +00:00
Jeff Squyres
7c09923751 Updates: 
- Handle MPI_IN_PLACE
- Use ompi_ddt_copy_content_same_ddt() where relevant

This commit was SVN r7349.
 2005-09-13 19:39:49 +00:00
Jeff Squyres
15f5294da4 Ignore another param in the IN_PLACE case 
This commit was SVN r7348.
 2005-09-13 19:15:01 +00:00
Jeff Squyres
c89e8c3712 Fixes for error checking -- properly ignore arguments as they should 
be

This commit was SVN r7347.
 2005-09-13 19:07:13 +00:00
Graham Fagg
9053790973 fixed bruck alltoall bug. now passes ibm tests 
This commit was SVN r7346.
 2005-09-13 18:35:45 +00:00
Jeff Squyres
47a1a2b7ec Arrgh. Compile *before* commit. 
Sorry folks -- stupid typo fixed.

This commit was SVN r7345.
 2005-09-13 18:12:10 +00:00
Jeff Squyres
da87169d17 Add support for MPI_IN_PLACE for the easy operations. 
This commit was SVN r7344.
 2005-09-13 18:02:36 +00:00
Jeff Squyres
ad647b105d Error checking for MPI_IN_PLACE 
This commit was SVN r7343.
 2005-09-13 17:07:03 +00:00
Tim Woodall
ee58631c82 corrections for probe/iprobe 
This commit was SVN r7342.
 2005-09-13 16:45:41 +00:00
Jeff Squyres
bbae6c3b1a Add missing header file 
This commit was SVN r7338.
 2005-09-13 12:19:34 +00:00
Graham Fagg
f354140587 Multiple changes 
-added some alltoall calls (pairwise checked ok, bruck testing)
-changes in use of data hung of communicator
-making sendrecv call a true inline function
-more use ompi_ddt routines

This commit was SVN r7337.
 2005-09-13 04:28:18 +00:00
Tim Woodall
bacc1b9122 hack to request all existing values for jobids other 
than our own - required for mpi2 dynamic processes

This commit was SVN r7336.
 2005-09-13 03:53:53 +00:00
Galen Shipman
39f25428da missing includes, perhaps related to george's work? 
This commit was SVN r7332.
 2005-09-13 02:00:28 +00:00
Galen Shipman
d932cfd342 merge of rcache work into the trunk.. lotsa fun ;-).. 
I regression tested before the merge, I will regression test tonight and
correct issues that might have crept in. 

This commit was SVN r7329.
 2005-09-12 22:28:23 +00:00
Brian Barrett
4c62c356c7 * more missing header file recovery 
This commit was SVN r7328.
 2005-09-12 22:13:09 +00:00
George Bosilca
8308ab42e9 GM depend on the proc.h now. 
This commit was SVN r7327.
 2005-09-12 21:52:44 +00:00
George Bosilca
e3a8489dd0 Replace ompi_proc_t by struct ompi_proc_t to remove all dependencies to proc.h 
This commit was SVN r7326.
 2005-09-12 21:51:56 +00:00
Brian Barrett
88cd561198 * bunch of fixes for Red Storm - missing header files and the like 
This commit was SVN r7325.
 2005-09-12 21:45:58 +00:00
Tim Woodall
304f6254e6 additional btl flags 
This commit was SVN r7324.
 2005-09-12 21:38:31 +00:00
Brian Barrett
15d48945c6 * fix communicator.h so that tree compiles again - needs to know what an ompi_proc_t is 
This commit was SVN r7323.
 2005-09-12 21:34:26 +00:00
George Bosilca
5caeb0295a Correct the includes and some indentation. 
This commit was SVN r7322.
 2005-09-12 20:36:04 +00:00
George Bosilca
948683215b And more fixes ... 
This commit was SVN r7321.
 2005-09-12 20:25:01 +00:00
Brian Barrett
79f7ea6856 * implement btl_put for Portals 
This commit was SVN r7320.
 2005-09-12 20:24:43 +00:00
George Bosilca
c9fb1f32f2 And more dependencies fixes. The big commit will follow shortly. 
This commit was SVN r7319.
 2005-09-12 20:22:59 +00:00
George Bosilca
fd1431bf0f Dependencies fixes. 
This commit was SVN r7318.
 2005-09-12 20:21:53 +00:00
George Bosilca
6eef57c5f2 More dependencies work. 
This commit was SVN r7317.
 2005-09-12 20:20:51 +00:00
George Bosilca
efac21256b Add some more dependencies. 
This commit was SVN r7316.
 2005-09-12 20:19:46 +00:00
George Bosilca
13f4191334 Remove the gm_config.h file as now the GM defines are in the ompi_config.h. 
Add some more header files for the next commit ... stay tuned ...

This commit was SVN r7315.
 2005-09-12 19:55:21 +00:00
George Bosilca
71b1cdb5f5 Cleanup the dependencies between the MPI layer and the rest of the ompi files. 
Modify the includes to start with the root directory (i.e orte/datatype/datatype.h).

This commit was SVN r7306.
 2005-09-12 09:17:44 +00:00
George Bosilca
1b031c153b Last commit to make the threaded case compiling without warnings. Next step try to make it working ... 
Correct the spring of the vpid problem (similar to the one in the SM PTL).

Add one more argument to the MCA_BTL_SM_FIFO_WRITE macro who will get passed down to the 
MCA_BTL_SM_SIGNAL_PEER macro to allow it to have the fifo_fd file descriptor.

This commit was SVN r7305.
 2005-09-11 20:55:22 +00:00
George Bosilca
f0e4cacd4d procs[proc]->proc_name.vpid is a size_t, so try to cast it before using sprintf. 
This commit was SVN r7304.
 2005-09-11 20:52:02 +00:00
George Bosilca
f8d9f6121c Typo correction ... 
This commit was SVN r7303.
 2005-09-11 20:49:27 +00:00
George Bosilca
8b1c28e068 No more warnings for the threaded case compilation. Some of the fields have to be declared 
as volatile to make sure the compiler don't try to optimize them out. 

This commit was SVN r7302.
 2005-09-11 20:48:37 +00:00
George Bosilca
e501768f10 Sleep is defined in the unistd.h file, do not forget to include it on the dependencies list. 
This commit was SVN r7301.
 2005-09-11 20:05:17 +00:00
George Bosilca
c24eb702bb Correctly compute the default sizes for the fragments. 
This commit was SVN r7299.
 2005-09-11 20:02:55 +00:00
George Bosilca
5b1303edef Correctly handle the convertor flags. 
This commit was SVN r7298.
 2005-09-11 18:51:47 +00:00
George Bosilca
6b2d154df3 Add more debug messages to the pack and unpack functions. 
This commit was SVN r7297.
 2005-09-11 18:51:06 +00:00
George Bosilca
95497b156e Cleanup the flags when we clone or copy a convertor. Add safety checks for the set_position function. 
This commit was SVN r7296.
 2005-09-11 18:49:46 +00:00
George Bosilca
df26395a83 Add some mask to cleanup the convertor flags. 
This commit was SVN r7295.
 2005-09-11 18:48:50 +00:00
George Bosilca
2e3764a181 Remove the unused variable p + something that SVN figure out and where I dont see any difference, 
certainly just some conversion from TAB to space ...

This commit was SVN r7287.
 2005-09-10 04:06:49 +00:00
George Bosilca
41c2dc6a79 Call the new unpack function from the new_unpack.c 
The cleanup of the pack/unpack framework will follow shortly.

This commit was SVN r7286.
 2005-09-09 23:38:31 +00:00
George Bosilca
35676f0c75 Do not forget to update the max_data before returning to the upper level. 
This commit was SVN r7285.
 2005-09-09 23:37:44 +00:00
George Bosilca
06d9c594ef A new unpack framework based on the pack. Quicker and simpler and hopefully less 
error prone.

This commit was SVN r7284.
 2005-09-09 23:37:02 +00:00
Graham Fagg
00842ad87c Fixed reduce bugs 
(added some temp debug routines)

This commit was SVN r7283.
 2005-09-09 23:05:17 +00:00
George Bosilca
0ad973afdd Do not modex sned and receive the proc architecture. This is now done outside the PML in the proc 
init and was added there few weeks ago by Ralph.

This commit was SVN r7282.
 2005-09-09 22:21:57 +00:00
Jeff Squyres
e8da20a6ae Fix VPATH build 
This commit was SVN r7281.
 2005-09-09 22:20:37 +00:00
George Bosilca
43e37060a8 Correct a unfortunate typo in the fortran constants ... We still have untested code inside :) 
Add a macro to convert from Fortran to C MPI_IN_PLACE.

This commit was SVN r7276.
 2005-09-09 20:46:47 +00:00
George Bosilca
56f8607439 Adding MPI_IN_PLACE for both languages C and Fortran. Still working on the C++ and maybe F90 stuff. It's easilly 
getting ugly ...

This commit was SVN r7275.
 2005-09-09 20:44:04 +00:00
Jeff Squyres
4aa75fa739 - Make opal_output_stream_t be a real opal_object_t so that it can use 
a constructor, like the rest of the code base
- Convert usage in the tree to use the constructor to zero out an
  instance of opal_output_stream_t
- Still need to re-enable output files

This commit was SVN r7253.
 2005-09-09 10:46:54 +00:00
Jeff Squyres
8ec6721f24 Prior fix for the ROMIO re-#define problem didn't really fix the 
problem because Autoconf replaced the "#undef ..." with "#define
...".  Fix this by not putting the "#undef ..." statement directly in
romioconf.h[.in] -- but rather having romioconf.h[.in] #include
romioconf-undefs.h, which has the #undef statements.

This commit was SVN r7252.
 2005-09-09 10:33:04 +00:00
George Bosilca
778468a5b6 Add comment about how to compile these 2 tests. 
This commit was SVN r7248.
 2005-09-09 06:17:19 +00:00
George Bosilca
b2bb2393fc Remove all useless debug stuff. 
This commit was SVN r7247.
 2005-09-09 06:16:44 +00:00
George Bosilca
63fb0f3341 Correct the eager problem for some devices. The bug was because we stop packing too early, not on the 
data where I have to start the next time, but on the place where I detect there is no more space in the
iovecs. That lead to a wrong computation of the displacement on the next call to pack.

Additionally, I change some macros on statis inline functions. They allow me to go inside step by step
with a debugger. They will go back to macros one I'm 100% sure they cannot generate any more errors.

This commit was SVN r7246.
 2005-09-09 06:07:37 +00:00
George Bosilca
8280ce8f6d A new flag has been added. To detect when the convertor has finish its work a complex condition 
was computed. This informations can be updated on the convertor flag by the pack/unpack function,
making the test a lot simpler. The pack/unpack functions will be modified soon.

This commit was SVN r7245.
 2005-09-09 06:04:29 +00:00
George Bosilca
3693816d08 Update the old datatype test and add a new one based on the test Tim wrote. 
This commit was SVN r7244.
 2005-09-09 06:01:59 +00:00
Graham Fagg
9596d6e2f3 use correct names or cannot call functions... 
use correct ddt calls (and params ext vs lb etc)

This commit was SVN r7243.
 2005-09-09 02:39:57 +00:00
Galen Shipman
e2186a1cc2 Updates to the rb rcache.. 
This commit was SVN r7238.
 2005-09-08 21:34:26 +00:00
Galen Shipman
ec2b99986f remove rcache_base_init.c no longer needed.. 
This commit was SVN r7237.
 2005-09-08 16:31:17 +00:00
Jeff Squyres
1d20f800ba Add another flag to MPI_Op's -- whether it is associative with 
floating point numbers or not (e.g., MAX is, but SUM is not).

This commit was SVN r7230.
 2005-09-08 09:47:27 +00:00
Jeff Squyres
e8b120fbf2 - Add some #undef's so that we don't conflict with the 
AC-automatically-generated macros
- Remove a useless #include

This commit was SVN r7228.
 2005-09-08 09:42:19 +00:00
Galen Shipman
6c8e9ab661 more rcache changes 
This commit was SVN r7227.
 2005-09-07 20:37:17 +00:00
Galen Shipman
a0b82acece Add fleshed out open,create and close 
This commit was SVN r7226.
 2005-09-07 20:21:15 +00:00
George Bosilca
d27f17f406 Solve the reference count problem. As the MPI functions always use the ompi_ddt_set_args 
and ompi_ddt_release_args functions, increase the reference count for the used datatypes here
not in the dt_add.c. Tus, we have a correct reference count for all data-type independing if
the datatypes are used in MPI or directly in others modules.

This commit was SVN r7225.
 2005-09-07 20:10:24 +00:00
Jeff Squyres
b31c2f8e77 Remove unnecessary AM_CPPFLAGS 
This commit was SVN r7221.
 2005-09-07 18:40:56 +00:00
George Bosilca
105595bd08 Make rcache look like a component. The problem is that on MAC OS X ar is more sensitive 
than other Unix OS's and does not accept to be called with any arguments. Therefore,
we need these files in order to succesfully compile even if they are empty.

This commit was SVN r7220.
 2005-09-07 18:09:04 +00:00
George Bosilca
23cb29aefe The src directory is not used anymore but it's still present in the configure.params file. Anyway I don't think this file is used as the .h file does not exist ... 
This commit was SVN r7219.
 2005-09-07 17:16:41 +00:00
George Bosilca
f0b4553757 Correctly set the include for the ddt_test. 
This commit was SVN r7217.
 2005-09-07 17:05:29 +00:00
Jeff Squyres
881851604b Update the docs on the actual algorithms used 
This commit was SVN r7216.
 2005-09-07 15:46:33 +00:00
Tim Woodall
59f2462ef0 corrections/clarifications 
This commit was SVN r7215.
 2005-09-07 13:40:22 +00:00
Jeff Squyres
9302f924ea simplify the bcast code by taking abstract actions and making them 
macros -- will help with the other algorithms

This commit was SVN r7214.
 2005-09-07 13:33:43 +00:00
Tim Woodall
3e002203a0 dont need to adjust size 
This commit was SVN r7213.
 2005-09-07 13:25:05 +00:00
Brian Barrett
ed56e743b7 * update configure.ac to use the modern version of AC_INIT and 
AM_INIT_AUTOMAKE, instead of the deprecated version.
* Work around dumbness in modern AC_INIT that requires the version
  number to be set at autoconf time (instead of at configure time, as
  it was before).  Set the version number, minus the subversion r number,
  at autoconf time.  Override the internal variables to include the r
  number (if needed) at configure time.  Basically, the right thing
  should always happen.  The only place it might not is the version
  reported as part of configure --help will not have an r number.
* Since AM_INIT_AUTOMAKE taks a list of options, no need to specify
  them in all the Makefile.am files.
* Addes support for subdir-objects, meaning that object files are put
  in the directory containing source files, even if the Makefile.am is
  in another directory.  This should start making it feasible to
  reduce the number of Makefile.am files we have in the tree, which
  will greatly reduce the time to run autogen and configure.

This commit was SVN r7211.
 2005-09-07 05:54:53 +00:00
Jeff Squyres
7bab4ed269 bunches of updates 
- finally added "in use" flags -- one flag protects a set of segments
- these flags now used in bcast to protect (for example) when a
  message is so long that the root loops around the segments and has
  to re-use old segments -- now it knows that it has to wait until the
  non-root processes have finished with that set of segments before it
  can start using them
- implement allreduce as a reduce followed by a bcast (per discussion
  with rich)
- removed some redundant data on various data structures
- implemented query MCA param ("coll_sm_shared_mem_used_data") that
  tells you how much shared memory will be used for a given set of MCA
  params (e.g., number of segments, etc.).  For example:

  ompi_info --mca coll_sm_info_num_procs 4 --param coll sm | \
	    grep shared_mem_used_data

  tells you that for the default MCA param values (as of r7172), for 4
  processes, sm will use 548864 bytes of shared memory for its data
  transfer section
- remove a bunch of .c files from the Makefile.am that aren't
  implemented yet (i.e., all they do is return ERR_NOT_IMPLEMENTED)

Now on to the big Altix to test that this stuff really works...

This commit was SVN r7205.

The following SVN revision numbers were found above:
  r7172 --> open-mpi/ompi@bc72a7722b
 2005-09-06 21:41:55 +00:00
Tim Woodall
7ccc43a052 correct for btls that don't support get 
This commit was SVN r7201.
 2005-09-06 19:01:35 +00:00
Tim Woodall
a3786c4579 dont attempt to deregister if not supported 
This commit was SVN r7200.
 2005-09-06 18:27:53 +00:00
Tim Woodall
d7d717af46 correction for case where registration not supported 
This commit was SVN r7199.
 2005-09-06 18:27:07 +00:00
Galen Shipman
e5ea1b55ef fix for threaded build 
This commit was SVN r7194.
 2005-09-06 15:21:31 +00:00
Galen Shipman
a47cb00f84 fix bug in threaded build.. 
This commit was SVN r7193.
 2005-09-06 14:37:46 +00:00
Graham Fagg
b97305bbcc a few more functions (testing) 
This commit was SVN r7190.
 2005-09-06 05:21:57 +00:00
George Bosilca
5df64827c8 The MX BTL and PTL does not require the same version of the MX library. The BTL accept the 
default version while the PTL require a patched version (iwith the mx_register_match_callback function).

This commit was SVN r7188.
 2005-09-06 03:11:42 +00:00
Brian Barrett
6f19022db9 * Update Portals configuration to use --with-portals instead of 
--with-btl-portals
* Update Red Storm build config file tomatch change

This commit was SVN r7185.
 2005-09-05 21:02:50 +00:00
Galen Shipman
f541088bc3 typo broke the threaded build.. 
This commit was SVN r7182.
 2005-09-05 16:43:01 +00:00
George Bosilca
3078be40aa First stable version of the MX BTL (at least we pass NetPipe). The perfs are not amazing 
but are not that bad either.

On a 2 procs Intel(R) Xeon(TM) CPU 3.20GHz with MYRICOM Inc. Myrinet 2000 Scalable Cluster Interconnect (rev 04) I get:

  0:       1 bytes  13096 times -->      1.10 Mbps in       6.94 usec
  1:       2 bytes  14408 times -->      2.17 Mbps in       7.02 usec
  2:       3 bytes  14243 times -->      3.24 Mbps in       7.07 usec
  3:       4 bytes   9428 times -->      4.27 Mbps in       7.15 usec
  4:       6 bytes  10493 times -->      6.26 Mbps in       7.32 usec
  5:       8 bytes   6834 times -->      8.18 Mbps in       7.47 usec
  6:      12 bytes   8371 times -->     11.89 Mbps in       7.70 usec
  7:      13 bytes   5411 times -->     12.72 Mbps in       7.80 usec
  8:      16 bytes   5919 times -->     15.35 Mbps in       7.95 usec
  9:      19 bytes   7074 times -->     17.66 Mbps in       8.21 usec
 10:      21 bytes   7696 times -->     19.00 Mbps in       8.43 usec
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100:  786429 bytes     22 times -->   1827.24 Mbps in    3283.64 usec
101:  786432 bytes     20 times -->   1827.03 Mbps in    3284.03 usec
102:  786435 bytes     20 times -->   1827.20 Mbps in    3283.73 usec
103: 1048573 bytes     10 times -->   1840.05 Mbps in    4347.71 usec
104: 1048576 bytes     11 times -->   1839.68 Mbps in    4348.58 usec
105: 1048579 bytes     11 times -->   1840.13 Mbps in    4347.54 usec
106: 1572861 bytes     11 times -->   1853.99 Mbps in    6472.50 usec
107: 1572864 bytes     10 times -->   1854.11 Mbps in    6472.10 usec
108: 1572867 bytes     10 times -->   1854.12 Mbps in    6472.10 usec
109: 2097149 bytes      5 times -->   1861.41 Mbps in    8595.61 usec
110: 2097152 bytes      5 times -->   1861.25 Mbps in    8596.40 usec
111: 2097155 bytes      5 times -->   1860.99 Mbps in    8597.59 usec
112: 3145725 bytes      5 times -->   1868.34 Mbps in   12845.59 usec
113: 3145728 bytes      5 times -->   1868.30 Mbps in   12845.90 usec
114: 3145731 bytes      5 times -->   1868.59 Mbps in   12843.89 usec
115: 4194301 bytes      3 times -->   1872.16 Mbps in   17092.51 usec
116: 4194304 bytes      3 times -->   1872.31 Mbps in   17091.19 usec
117: 4194307 bytes      3 times -->   1872.13 Mbps in   17092.82 usec
118: 6291453 bytes      3 times -->   1875.88 Mbps in   25588.00 usec
119: 6291456 bytes      3 times -->   1875.98 Mbps in   25586.68 usec
120: 6291459 bytes      3 times -->   1875.93 Mbps in   25587.36 usec
121: 8388605 bytes      3 times -->   1877.79 Mbps in   34082.69 usec
122: 8388608 bytes      3 times -->   1877.72 Mbps in   34083.84 usec
123: 8388611 bytes      3 times -->   1877.66 Mbps in   34085.00 usec

This commit was SVN r7180.
 2005-09-04 22:08:13 +00:00
Galen Shipman
1af92a1de2 tried to acquire wrong lock.. 
This commit was SVN r7177.
 2005-09-04 13:26:46 +00:00
Galen Shipman
ba9342085e Changes to support rcache in mpool 
This commit was SVN r7176.
 2005-09-04 04:20:55 +00:00
Galen Shipman
dc769e3560 Initial checking of rcache.. svn issues required mult checkins.. 
This commit was SVN r7175.
 2005-09-04 04:19:31 +00:00
Galen Shipman
2314919b73 Initial checkin of rcache 
This commit was SVN r7174.
 2005-09-04 04:17:00 +00:00
Brian Barrett
492aeecd11 * track the actual allocations within the ompi and opal free_lists, so that 
we can free all allocated memory when the free_list is destructed.  Fixes
  a whole bunch of memory leaks...

This commit was SVN r7173.
 2005-09-03 19:46:44 +00:00
Jeff Squyres
bc72a7722b Updates: 
- bcast now works properly for root!=0 and multi-fragment messages
- destroy mpool when communicator is destroyed
Still need to implement:
- "in use" flags for groups of fragments so that "wrapping around" in
  the data segment doesn't overwrite not-yet-read data
- ensure that shared memory isn't removed before all processes have
  finished with it (e.g., during COMM_FREE)

This commit was SVN r7172.
 2005-09-03 11:49:46 +00:00
Graham Fagg
059d7f26f8 re-enable proper freeing of allocated structures now that I know these 
are not causing an error.

This commit was SVN r7170.
 2005-09-03 06:19:17 +00:00
Graham Fagg
35447d4c32 underfilling of a only segment and the doing a PML send and esp a recv on it can 
cause flipping hard to find memory errors...

This commit was SVN r7169.
 2005-09-03 06:14:03 +00:00
Graham Fagg
36eddb6609 checkpoint 
This commit was SVN r7168.
 2005-09-03 01:41:13 +00:00
Jeff Squyres
99c3edab67 Added mca_mpool_base_module_destroy() function so that you can destroy 
an mpool module before MPI_FINALIZE (i.e., ompi_mpi_finalize())

This commit was SVN r7165.
 2005-09-03 00:07:34 +00:00
Tim Woodall
b65dc08ab1 counters need to be signed as we check for <0 
This commit was SVN r7155.
 2005-09-02 18:26:07 +00:00
Tim Woodall
dfe52fceef minor changes to thread locking 
This commit was SVN r7154.
 2005-09-02 16:27:01 +00:00
Brian Barrett
a9863e5ff5 * properly construct / destruct the condition variable in the free list 
structures

This commit was SVN r7153.
 2005-09-02 16:00:42 +00:00
Galen Shipman
589b1b8b5a Additional changes to add_proc and tokens 
This commit was SVN r7152.
 2005-09-02 15:18:36 +00:00
Tim Woodall
4fbf7965e3 check for rdma btls when leave pinned is set 
This commit was SVN r7151.
 2005-09-02 15:04:47 +00:00
Jeff Squyres
647f6a7648 Update data structures 
This commit was SVN r7150.
 2005-09-02 14:53:14 +00:00
Jeff Squyres
6ef4805729 Tree-based barrier and broadcast seem to be working. Now on to reduce 
/ allreduce...

This commit was SVN r7149.
 2005-09-02 12:57:47 +00:00
Jeff Squyres
560f323048 Update to ensure that the macros AC_REQUIRE'd by AC_CHECK_HEADER are 
always invoked properly.

This commit was SVN r7147.
 2005-09-02 11:01:07 +00:00
Jeff Squyres
99db862e9b Fix silly compiler warning 
This commit was SVN r7144.
 2005-09-02 10:18:06 +00:00
Galen Shipman
a7a4da4502 Scale the SRQ based on the log base 2 of the number of peers, 
this assumes that the peers have all been added via add_procs up front. 
Bad things will happen if add_procs is called again later on a new set of
 procs to fix this we need to modify the srq which may wreck things.. looking
 into this deeper.. 

This commit was SVN r7142.
 2005-09-02 04:06:51 +00:00
Galen Shipman
c8a23106c0 More fixes for sq tokens, 
Additional work on multi-rail support. 

This commit was SVN r7139.
 2005-09-02 03:04:28 +00:00
Graham Fagg
25787c4ca7 added segmented binary 
renamed split so we know its a split binary tree
(tested, chain/bin/splitbin all pass simple and ibm tests)

This commit was SVN r7138.
 2005-09-02 02:19:59 +00:00
Graham Fagg
a7a20e1a57 corrected first seg recv for intermediate nodes (or else we lose a request) 
This commit was SVN r7137.
 2005-09-02 00:55:47 +00:00
Graham Fagg
d78e9d0e9e get/handle extent correctly 
last rank in comm is not always last in tree structure for nonzero roots

This commit was SVN r7135.
 2005-09-01 22:56:47 +00:00
Graham Fagg
f4de8776a6 ops 
This commit was SVN r7133.
 2005-09-01 17:12:28 +00:00
Tim Woodall
636ab23fdb atomic increment/test 
This commit was SVN r7130.
 2005-09-01 15:09:50 +00:00
Ralph Castain
03e45e6723 Two quick additions: 
1. Added OMPI_PROC_ARCH as a defined registry key and added the code so that the architecture info gets properly transmitted across all processes using the startup message.

2. Added an OMPI_MODEX_KEY definition and removed the hard-coded "modex" key from pml_modex_exchange

This commit was SVN r7129.
 2005-09-01 15:05:03 +00:00
Jeff Squyres
3962c53e2e - Add to AM_CPPFLAGS $(OPAL_LTDL_CPPFLAGS) where necessary in order to 
add a -I to find the included ltdl.h (vs. a system-installed ltdl.h)
- Clean up kruft in a bunch of Makefile.am's to remove now-unnecessary
  AM_CPPFLAGS settings to get static-components.h for each framework
- Move the component_repository API functions out of opal/mca/base/base.h
  and into opal/mca/base/mca_base_component_repository.h in order to
  decrease unnecessary dependencies (e.g., before this, almost
  everything in the tree depended on ltdl.h, which is unnecessary --
  only a small number of files really need ltdl.h)

This commit was SVN r7127.
 2005-09-01 12:16:36 +00:00
Jeff Squyres
4c59058053 - Add some logic to configure to make a version of CFLAGS that doesn't 
include any optimization flags
- Use these flags to always compile ompi/debuggers/* and orterun so
  that parallel debuggers (such as Totalview) can always see the
  debugging symbols (see comments in ompi/debuggers/Makefile.am and
  orte/tools/orterun/Makefile.am)
- Remove some obsolete LAM-named variables from configure.ac

This commit was SVN r7125.
 2005-09-01 10:37:20 +00:00
Jeff Squyres
3bf265eeee Minor fix 
This commit was SVN r7124.
 2005-09-01 09:50:19 +00:00
George Bosilca
abadd5a984 Oops typo ... 
This commit was SVN r7123.
 2005-09-01 03:41:15 +00:00
George Bosilca
414e8fabad mx_* functions return MX_* error codes ... 
This commit was SVN r7122.
 2005-09-01 03:40:48 +00:00
Galen Shipman
29f7b4deda Changed send tokens to both send/rdma tokens for both low and high priority 
queue pairs. Tested on intel p2p with 16 procs - Passed. 

This commit was SVN r7119.
 2005-09-01 02:41:44 +00:00
Ralph Castain
96f4bb7a63 Hey, sports fans!! Guess what?? 
Here's the huge registry check-in you've all been waiting for with baited breath. The revised version sends a single message to all processes at the various stage gates, thus making the startup much more scalable. I could provide you with all the tawdry details, but won't for now - you are welcome to ask, though, and I'll merrily bore your ears to tears.

In addition, the commit contains the following:

1. set the ignore properties on ompi/debuggers and orte/mca/pls/poe

2. Added simplified subscribe and put functions to the registry's API. I have also converted all of the ompi functions that registered subscriptions to the new API, and caught their associated put's as well.

In a follow-on commit, I'll be adding support for George's hetero arch registry subscription (wanted to get this one in first).

This commit was SVN r7118.
 2005-09-01 01:07:30 +00:00
Graham Fagg
4ac2445c61 Various clean ups 
Changed component so choice of decision functions controlled by mca params
(for now fixed decision functions (if statements) default)
started fixes for the various bcasts

This commit was SVN r7117.
 2005-08-31 23:38:09 +00:00
David Daniel
227947fc51 Moving MPI-side TotalView support into a separate directory 
ompi/debuggers/

so that compilation options can be more easily controlled.

This commit was SVN r7113.
 2005-08-31 20:35:15 +00:00
Galen Shipman
c7e9563377 Added sender side per qp send tokens to limit the number of outstanding 
sends. 

This commit was SVN r7112.
 2005-08-31 20:28:42 +00:00
Galen Shipman
4556f5bb7c Fix for multiple calls to add_procs 
This commit was SVN r7111.
 2005-08-31 19:44:28 +00:00
Galen Shipman
09873f299f Fixed a race in connection establishment.. 
This commit was SVN r7110.
 2005-08-31 19:43:22 +00:00
Jeff Squyres
b4e2c96e22 - Adjust include paths for ltdl.h 
- Properly set CLEANFILES to remove F90 kruft

This commit was SVN r7106.
 2005-08-31 10:56:01 +00:00
Graham Fagg
1caec16018 snapshot as I move machines 
do not use

This commit was SVN r7103.
 2005-08-31 01:43:48 +00:00
David Daniel
995641c1e6 Don't initialize proctable more than once (since the stage gate 1 trigger 
seems to get fired at least twice).

This commit was SVN r7101.
 2005-08-31 00:21:55 +00:00
Tim Woodall
47b41c7081 correct regression 
This commit was SVN r7098.
 2005-08-30 19:38:56 +00:00
David Daniel
a5d9199e7f Adding a simple hook for TotalView that is activated if a particular MCA 
parameter is set.

orterun/MPI integration still not quite working.

This commit was SVN r7097.
 2005-08-30 17:34:23 +00:00
Galen Shipman
00e0ff729d intialize free list to rr_buf_max, report async errors to user. 
This commit was SVN r7095.
 2005-08-30 16:44:38 +00:00
Jeff Squyres
10488b717a More 0 count fixes. 
This commit was SVN r7083.
 2005-08-29 19:55:48 +00:00
Jeff Squyres
0ef7ced8f0 For items with 0 receive counts, don't try to receive. 
This commit was SVN r7082.
 2005-08-29 19:37:07 +00:00
Tim Woodall
d34e299829 correctly decrement progress_event if tcp is not being 
used so that tcp doesn't impact progress loop

This commit was SVN r7078.
 2005-08-29 17:29:58 +00:00
George Bosilca
12c09fef92 PTL GM now use the new configure system (m4 macros). 
This commit was SVN r7070.
 2005-08-28 01:38:58 +00:00
Brian Barrett
173e062fbb * Spell LIBS as LIBS not LIBX ;) 
This commit was SVN r7069.
 2005-08-27 17:38:50 +00:00
Jeff Squyres
9d6c22b0d5 Commit 2 of 2 to shorten romio component filenames: change the sym 
links from mca_io_romio_dist_* to io_romio_*

This commit was SVN r7066.
 2005-08-27 15:33:42 +00:00
Jeff Squyres
8006b1a5a8 Part 1 of 2 of a commit to reduce filenames in the romio component 
(because we kept bumping up against the max filename limit in "tar"
when making tarballs, especially if the version number got long).

This commit was SVN r7065.
 2005-08-27 15:17:25 +00:00
George Bosilca
0eabdd9498 The correct way to detect if a contiguous datatpe has gaps around (in the begining or at the 
end) is to check the size and the extent (not the true extent).
If there are gaps we should adapt the source and the destination to match these gaps
(especially if the gaps are in the begining).

This commit was SVN r7060.
 2005-08-26 22:41:04 +00:00
Jeff Squyres
c9cdb36b0b Finally get this right: move orte_sys_info.[ch] back into the orte 
tree.
- fix up #include's throughout the tree (yay contrib/search_replace.pl!)
- remove a few extraneous #include's
- remove orte_sys_info*() from opal_init()/opal_finalize() (it's
  already in orte_init_stage1() and orte_system_finalize())
- remove dependencies in opal on orte_system_info -- util/os_path.c
  and util/os_create_dirpath.c (they only used path_sep, anyway --
  easily changed to #defines)

This commit was SVN r7059.
 2005-08-26 21:03:41 +00:00