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1418 Коммитов

Автор SHA1 Сообщение Дата
Aurelien Bouteiller
9cc2557f9c fixed a typo. oapl instead of opal
This commit was SVN r21711.
2009-07-17 22:20:53 +00:00
George Bosilca
03a0b04ab8 Get rid of all unused functions.
This commit was SVN r21704.
2009-07-16 19:53:07 +00:00
George Bosilca
3e971e61f3 The system headers are supposed to be protected by #ifdef and not by #if.
This commit was SVN r21700.
2009-07-16 18:27:33 +00:00
Shiqing Fan
957cdceb20 Another OMPI->OPAL renaming.
This commit was SVN r21659.
2009-07-14 06:54:17 +00:00
Shiqing Fan
f991c87c6a A few structures that need to be exported for Windows.
This commit was SVN r21658.
2009-07-14 06:53:42 +00:00
George Bosilca
a934b9d975 Add the Open MPI specific part based on a patch from Manuel. Add the
sparc and alpha. A manpage patch is also included. This partially fixes
ticket #1973.

This commit was SVN r21654.
2009-07-13 20:01:12 +00:00
George Bosilca
81c16ac317 Add missing header.
This commit was SVN r21653.
2009-07-13 19:40:31 +00:00
Shiqing Fan
503f2817b3 Corresponding changes to r21641 and r21642 for Windows.
- Add a CMake macro for checking OPAL_MAX_XXX values, re-written from OPAL_WITH_OPTION_MIN_MAX_VALUE m4 function. 
- Definition prefix changes and additional datatype alignments checking.
- Finish the datatype splitting on Windows too. :-)

This commit was SVN r21649.

The following SVN revision numbers were found above:
  r21641 --> open-mpi/ompi@6c5532072a
  r21642 --> open-mpi/ompi@c971c09eb6
2009-07-13 17:39:41 +00:00
Shiqing Fan
2f552eb8c1 Missing C_DECLS.
This commit was SVN r21648.
2009-07-13 17:31:42 +00:00
Rainer Keller
6c5532072a - Split the datatype engine into two parts: an MPI specific part in
OMPI
   and a language agnostic part in OPAL. The convertor is completely
   moved into OPAL.  This offers several benefits as described in RFC
   http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
   namely:
    - Fewer basic types (int* and float* types, boolean and wchar
    - Fixing naming scheme to ompi-nomenclature.
    - Usability outside of the ompi-layer.
 - Due to the fixed nature of simple opal types, their information is
   completely
   known at compile time and therefore constified
 - With fewer datatypes (22), the actual sizes of bit-field types may be
   reduced
   from 64 to 32 bits, allowing reorganizing the opal_datatype
   structure, eliminating holes and keeping data required in convertor
   (upon send/recv) in one cacheline...
   This has implications to the convertor-datastructure and other parts
   of the code.
 - Several performance tests have been run, the netpipe latency does not
   change with
   this patch on Linux/x86-64 on the smoky cluster.
 - Extensive tests have been done to verify correctness (no new
   regressions) using:
   1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
    ompi-ddt:
    a. running both trunk and ompi-ddt resulted in no differences
       (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
       correctly).
    b. with --enable-memchecker and running under valgrind (one buglet
       when run with static found in test-suite, commited)
   2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
      all passed (except for the dynamic/ tests failed!! as trunk/MTT)
   3. compilation and usage of HDF5 tests on Jaguar using PGI and
      PathScale compilers.
   4. compilation and usage on Scicortex.
 - Please note, that for the heterogeneous case, (-m32 compiled
   binaries/ompi), neither
   ompi-trunk, nor ompi-ddt branch would successfully launch.

This commit was SVN r21641.
2009-07-13 04:56:31 +00:00
Jeff Squyres
d7d07e0720 Improve the help messages from r20706.
This commit was SVN r21616.

The following SVN revision numbers were found above:
  r20706 --> open-mpi/ompi@248bbb8a2f
2009-07-09 11:58:31 +00:00
George Bosilca
2570a15651 Add a TODO bullet for later processing ...
This commit was SVN r21611.
2009-07-07 17:27:47 +00:00
George Bosilca
b85e3636f3 Cope with the case where IPv6 headers are not available.
This commit was SVN r21593.
2009-07-02 18:00:26 +00:00
Ralph Castain
d3fb39073f Initialize a variable to ensure we get the correct number of bound processors
This commit was SVN r21590.
2009-07-02 17:48:04 +00:00
Shiqing Fan
0e09cb650e The kernel index of the network interface wasn't set on Windows, it really caused a lot of problems.
This commit was SVN r21587.
2009-07-02 14:44:41 +00:00
Shiqing Fan
22666721a5 Fix a typo.
This commit was SVN r21584.
2009-07-02 08:49:22 +00:00
Shiqing Fan
c8284907c4 Another header for using _getch on Windows.
This commit was SVN r21537.
2009-06-26 13:07:08 +00:00
Shiqing Fan
77f33d182b Add another definition for deprecated UNIX function on Windows, silent the warnings.
This commit was SVN r21507.
2009-06-24 18:14:23 +00:00
Jeff Squyres
246caafe06 Correct the logic of the check for the env variable
OMPI_MCA_memory_ptmalloc2_disable and also add an explicit check for
FAKEROOTKEY (see http://bugs.debian.org/531522).

This commit was SVN r21489.
2009-06-20 11:22:06 +00:00
Jeff Squyres
f42727707b Per http://bugs.debian.org/531522, add an MCA param/environment
variable to allow the disabling of the ptmalloc2 component at init
time.

This commit was SVN r21479.
2009-06-19 10:50:23 +00:00
Jeff Squyres
6777f01380 Also look for /dev/ipath
This commit was SVN r21410.
2009-06-11 00:35:21 +00:00
Ralph Castain
f966d9f972 Fix visibility issues with opal_graph functions.
Fix the carto test so it can compile - need to update input file so it can run

This commit was SVN r21403.
2009-06-09 15:02:57 +00:00
Ralph Castain
c3c1ab1337 Correct a comment in paffinity.h about what paffinity_get returns - it was inaccurate.
Revamp the affinity detection/set procedure in mpi_init to correctly detect when we have already been bound to processors, given the revised understanding of paffinity_get. Add a new paffinity macro to make checking for already bound a little nicer.

This commit was SVN r21402.
2009-06-09 14:33:35 +00:00
Josh Hursey
70333b9441 Some components were still using OMPI_*_VERSION instead of OPAL_*_VERSION, so convert them over (Jeff is taking care of PLPA, so that is not included here).
This commit was SVN r21384.
2009-06-05 15:34:59 +00:00
Shiqing Fan
e46bf10efd Correctly include win32 util header.
This commit was SVN r21343.
2009-06-01 19:16:00 +00:00
Rainer Keller
b572dc3591 - As discussed revert r21330, Fortran-configure info should
not end up in OPAL
 - Will post an updated patch for the OMPI_ALIGNMENT_ parts (within C).

This commit was SVN r21342.

The following SVN revision numbers were found above:
  r21330 --> open-mpi/ompi@95596d1814
2009-06-01 19:02:34 +00:00
Rainer Keller
95596d1814 - Move alignment and size output generated by configure-tests
into the OPAL namespace, eliminating cases like opal/util/arch.c
   testing for ompi_fortran_logical_t.
   As this is processor- and compiler-related information
   (e.g. does the compiler/architecture support REAL*16)
   this should have been on the OPAL layer.
 - Unifies f77 code using MPI_Flogical instead of opal_fortran_logical_t

 - Tested locally (Linux/x86-64) with mpich and intel testsuite
   but would like to get this week-ends MTT output


 - PLEASE NOTE: configure-internal macro-names and
   ompi_cv_ variables have not been changed, so that
   external platform (not in contrib/) files still work.

This commit was SVN r21330.
2009-05-30 15:54:29 +00:00
Shiqing Fan
06841bf721 Fix a typo.
This commit was SVN r21305.
2009-05-27 19:08:46 +00:00
Shiqing Fan
ed61198423 Rewrite inet_ntop and inet_pton with WSAAddressToString and WSAStringToString for Windows. Decrease the minimum requirement for Windows Version.
This commit was SVN r21304.
2009-05-27 19:04:59 +00:00
Shiqing Fan
b3c077e112 Microsoft doesn't provide inet_pton and inet_ntop APIs on Windows XP, but only on Windows Vista and 2008. So add a stand alone version of inet_pton and inet_ntop functions from ISC.
This commit was SVN r21295.
2009-05-27 14:32:30 +00:00
Jeff Squyres
510ec093b6 Remove some dead code
This commit was SVN r21275.
2009-05-26 21:17:00 +00:00
Iain Bason
e7ff2368d6 This fixes trac:1930.
Emit a more informative error message when the file descriptor limit is
reached during an accept() call.  Also, abort when the accept fails to
avoid an infinite loop.

Emit a more informative error message when the help file can't be opened.

This commit was SVN r21271.

The following Trac tickets were found above:
  Ticket 1930 --> https://svn.open-mpi.org/trac/ompi/ticket/1930
2009-05-26 20:03:21 +00:00
Rainer Keller
36ee105d6a - Fix Coverity CID #1207:
set the tmp_str to NULL, so we don't have any double-free...
   Additionally, we should check for malloc returning NULL...

This commit was SVN r21228.
2009-05-14 00:21:15 +00:00
Rainer Keller
3f7f2b6f0f - Multiple functions, that allocate and return new
strings, aka should have __opal_attribute_malloc__
   update comment of opal_path_access -- new string returned.

This commit was SVN r21227.
2009-05-14 00:20:07 +00:00
Rainer Keller
73fd329cbd - Add the proper __opal_attribute_format__(__printf__...) to
declarations.

This commit was SVN r21226.
2009-05-14 00:10:59 +00:00
Shiqing Fan
3137001772 Read from the correct registry entry on Windows Vista and Server 2008.
This commit was SVN r21224.
2009-05-13 15:56:37 +00:00
Ralph Castain
aa25a51c92 Do not mark the mpi_paffinity_alone param as deprecated so we don't scare Jeff...er...users.
This commit was SVN r21218.
2009-05-12 15:41:11 +00:00
Josh Hursey
ec6c5bf5e9 Make sure that when we destruct the pointer array that we set the address to NULL and size to 0. This will help to flag accidental usage of a destructed pointer array object.
This commit was SVN r21216.
2009-05-12 14:13:07 +00:00
Jeff Squyres
05d87ee7b4 Because this error comes up over and over and over and over and ...
Libltdl erroneously returns an error string of "file not found" for
lots of reasons, even if the file really *is* there, but just failed
to dlopen() for some reason.  So if lt_dlerror() returns "file not
found", do some simple hueristics and if we *do* find a file, print a
slightly better error message.

This commit was SVN r21214.
2009-05-12 12:41:42 +00:00
Ralph Castain
d396f0a6fc Per the discussion on the devel list, move the binding of processes to processors from MPI_Init to process start. This involves:
1. replacing mpi_paffinity_alone with opal_paffinity_alone - for back-compatibility, I have aliased mpi_paffinity_alone to the new param name. This caus
es a mild abstraction break in the opal/mca/paffinity framework - per the devel discussion...live with it. :-) I also moved the ompi_xxx global variable
 that tracked maffinity setup so it could be properly closed in MPI_Finalize to the opal/mca/maffinity framework to avoid an abstraction break.

2. Added code to the odls/default module to perform paffinity binding and maffinity init between process fork and exec. This has been tested on IU's odi
n cluster and works for both MPI and non-MPI apps.

3. Revise MPI_Init to detect if affinity has already been set, and to attempt to set it if not already done. I have *not* tested this as I haven't yet f
igured out a way to do so - I couldn't get slurm to perform cpu bindings, even though it supposedly does do so.

This has only been lightly tested and would definitely benefit from a wider range of evaluation...

This commit was SVN r21209.
2009-05-12 02:18:35 +00:00
Josh Hursey
d920a302f3 Some more C/R related commits that have been sitting off-trunk for a while.
* Pass the sequence number of the checkpoint along with reference from the global to the local coordinator.
 * 'orte-restart --apponly' now just generates the app context file, and does not run with it. This provides the user the ability to edit the file before launching. 
 * Add a OPAL_CRS_NONE state
 * Split the INC into three distinct parts.
 * Implement a restart mechanism for the 'none' component. If given a context it simply execvp()'s it.

This commit was SVN r21195.
2009-05-08 20:51:13 +00:00
Josh Hursey
5d0607395d A couple of C/R related commits that have been sitting off-trunk for a while.
* Add 'orte-checkpoint -l' option that lists all checkpoints currently available on the system.
 * Add 'orte-restart -i' which prints information regarding the checkpoint targeted for restart.
 * Add ability to extract the timing metadata.
 * Fix show_help() in the orte-checkpoint and orte-restart tools. They should be using the opal versions instead of the orte versions (otherwise nothing is printed).

This commit was SVN r21194.
2009-05-08 19:41:11 +00:00
Shiqing Fan
537b8cd8b1 Get rid of improper use of SET_SOURCE_FILES_PROPERTIES. When using the latest CMake (2.6 patch 4), we get many errors, which didn't show in previous version.
This commit was SVN r21188.
2009-05-07 17:41:05 +00:00
Rainer Keller
b0754071b7 - For compilation with BLCR and --with-ft=cr, #include <string.h>
This commit was SVN r21185.
2009-05-07 16:14:59 +00:00
Greg Koenig
60485ff95f This is a very large change to rename several #define values from
OMPI_* to OPAL_*.  This allows opal layer to be used more independent
from the whole of ompi.

NOTE: 9 "svn mv" operations immediately follow this commit.

This commit was SVN r21180.
2009-05-06 20:11:28 +00:00
Rainer Keller
b8bb7865bc - Fix Coverity CID 9
Check for error in fcntl, as we depend on close-on-exec,
   F_SETFD will result in -1 in case of error (stored in errno).
   To not have a follow-up warning about not freeing filename, move up.

This commit was SVN r21171.
2009-05-05 19:04:58 +00:00
Shiqing Fan
cd565923d3 Completely remove ltdl support for Windows build.
This commit was SVN r21170.
2009-05-05 18:59:13 +00:00
Josh Hursey
8b8bee04d6 It seems that some of the patches were missed in r21131. :(
This patch contains the following items:
 * Fix the flag passed to open() for the read side of the named pipe between the local and app coordinator. There is a race condition when using O_RDWR on a named pipe (not sure how that bug got in there in the first place).
 * Adjust control in the C/R thread timing
 * Clarify return code in BLCR component
 * Allow the user to adjust the max wait time for the named pipes in the FileM local coordinator by using the MCA parameter "snapc_full_max_wait_time" (Default: 20 seconds)
 * If the application terminates while there are active FileM operations, force mpirun to wait on these operations to complete.
 * Allow the user to set the local copy command (Default: cp) via MCA parameter "filem_rsh_cp"
 * Implement the ability to throttle the number of outgoing connections in FileM. At larger scales this type of explicit throttling helps prevent overwhelming the HNP machine. Default: 10, set via MCA parameter: {{{filem_rsh_max_outgoing}}}

This commit was SVN r21167.

The following SVN revision numbers were found above:
  r21131 --> open-mpi/ompi@0deb009225
2009-05-05 16:45:49 +00:00
Shiqing Fan
c3380e9df2 put all generated files in the binary directory.
This commit was SVN r21160.
2009-05-05 13:50:48 +00:00
Shiqing Fan
8db5c3c002 Add missing quotation marks to the variables, in order to keep the semicolons in the output c file.
This commit was SVN r21151.
2009-05-05 08:29:19 +00:00