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Nathan Hjelm
2c02294389 opal_free_list: fix strange size check 
OPAL free lists can be initialized with a fragment size that differs
from the size of objects from a class. This allows the free list code
to support OPAL objects that have flexible array members.

Unfortunately the free list code will throw out the desired length in
some cases. The code in question was committed in
open-mpi/ompi@90fb58de. The side effects of this are varied and can
cause segmentation faults, assert failures, hangs, etc. This commit
adds a check to ensure the requested size is at least as large as the
class size and makes opal_free_list allocations always honor the
requested fragment size (as long as it is larger than the class
size).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-11-09 19:47:55 -07:00
Gilles Gouaillardet
c415ecf39e test/monitoring: build monitoring_prof lib only if dynamic libs are built 
Thanks Mark Santcroos for reporting this
 2015-11-10 11:33:12 +09:00
Mark Santcroos
5ec2b4d98c Fix some messages in the process. 2015-11-09 18:03:26 -05:00
Ralph Castain
52ea538bc1 Per fix from Nysal: set the listener_active flag before starting the progress thread, and declare the flag to be volatile 2015-11-09 09:00:59 -08:00
Mark Santcroos
8ec89001b3 Merge branch 'master' into fix/alpsinfov3 2015-11-09 02:45:23 -05:00
Ralph Castain
9b0cdc0de2 Add support for -pernode and -npernode options to orte-submit 2015-11-08 11:34:18 -08:00
Ralph Castain
187fa9b131 Extend the scaling test script to support multiple starters, including mpirun, orterun (if mpirun not present), orte-dvm, and srun. Auto-detect which are p 
resent and allow the user to run all of them. Auto-detect the number of nodes in the allocation.
 2015-11-08 11:34:06 -08:00
Ralph Castain
f2805fb0f9 Provide a mechanism for renaming symbols in the opposite direction - i.e., #define prefix_foo[suffix] foo. 2015-11-07 18:07:09 -08:00
rhc54
c788d7bf88 Merge pull request #1110 from rhc54/topic/renames 
Update the libevent renaming file to ensure that all public symbols a…
 2015-11-07 17:22:56 -07:00
Ralph Castain
73c8c30c5d Update the scaling.pl test script to support orte-dvm and srun 2015-11-07 13:13:36 -08:00
Ralph Castain
ee9aa67483 Update the libevent renaming file to ensure that all public symbols are covered 2015-11-07 12:52:31 -08:00
Ralph Castain
1f44fef4d6 Add ability to provide a suffix to the symbol renames 2015-11-07 12:37:14 -08:00
Ralph Castain
6864a9b68a Add a new script for creating symbol hiding "rename" files 2015-11-07 12:11:54 -08:00
rhc54
66b1ef24de Merge pull request #1108 from rhc54/topic/exitcode 
Need to delay registration of the waitpid callback until after the fo…
 2015-11-07 08:23:13 -07:00
Ralph Castain
18c5cb48ff Update the scaling test script 2015-11-06 21:51:40 -08:00
Ralph Castain
f1483eb2dc Need to delay registration of the waitpid callback until after the fork/exec of the child process. Fix the bit testing of process type so that the proper state component gets selected for HNP. 2015-11-06 21:35:24 -08:00
rhc54
7a9b9325a8 Merge pull request #1107 from rhc54/topic/pmix 
Work on cleaning up memory leaks that are causing orte-dvm to eventua…
 2015-11-06 17:16:49 -07:00
Ralph Castain
fed28e4cfc Add missing file that was previously ignored 2015-11-06 14:37:09 -08:00
Ralph Castain
5f446570d8 Work on cleaning up memory leaks that are causing orte-dvm to eventually run out of memory. Still don't have everything plugged, but getting better. Sync to the PMIx master that includes removal of the pmix_common.h.in file that really didn't need to be generated, and update to the PMIx_server_init API. 2015-11-06 14:15:30 -08:00
Jeff Squyres
e89ecac83c bml r2: fix exclusivity comparison 
Fixes open-mpi/ompi#1106
 2015-11-06 13:26:32 -08:00
Jeff Squyres
b35b708979 tcp BTL: fix inconsistent whitespace problems 
No code/logic changes.
 2015-11-06 12:41:13 -08:00
Jeff Squyres
300cff2b89 usnic: fix/update the usnic stats 
1. Fix: old v1.6-era code reset the stats-emitting event to fire twice
   for each time period.
1. Add the usNIC device name to the output for differentiating the
   output in multi-rail scenarios.
 2015-11-06 12:05:34 -08:00
rhc54
d63c448de9 Merge pull request #1102 from rhc54/topic/dvm 
Ensure that we completely register an nspace prior to launching local…
 2015-11-06 09:00:47 -07:00
rhc54
e964608b90 Merge pull request #1103 from rhc54/topic/intercomm 
Fix intercomm_create
 2015-11-06 08:19:02 -07:00
Francois WELLENREITER
b301b49a40 MTL portals4 : remove useless PtlMDBind PtlMDRelease calls for rendez-vous messages 2015-11-06 15:55:44 +01:00
Mark Santcroos
a40b4eb2ee Support ALPS_APPINFO_VERSION 3. 2015-11-06 09:53:41 -05:00
Ralph Castain
bfdf08ae86 Fix intercomm_create by ensuring that both sides know how to translate jobid to/from nspace 
Return something just to ensure that pack is happy
 2015-11-06 02:19:45 -08:00
Ralph Castain
ec0cc4bf21 Ensure that we completely register an nspace prior to launching local procs as otherwise we may attempt to send it down before it is registered, leading to data corruption 2015-11-05 20:51:56 -08:00
Nathan Hjelm
fda5daf453 Merge pull request #1096 from kawashima-fj/pr/fortran-var-type-fix 
Fix Fortran variable types
 2015-11-05 14:27:40 -07:00
Nathan Hjelm
e0a291812d Merge pull request #1101 from hjelmn/ib_fix 
btl/openib: fix access flags
 2015-11-05 09:01:28 -07:00
Ralph Castain
68996d6858 Move the argv_free back to the correct place - I blame Jeff for suggesting it was wrong to begin with 2015-11-05 07:57:54 -08:00
Nathan Hjelm
4ddbdad772 btl/openib: fix access flags 
Per spec for ibv_reg_mr if remote write or remote atomic is requested also
need to specify local write.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-11-04 15:23:11 -07:00
Nathan Hjelm
acf3cb9b9b Merge pull request #1095 from kawashima-fj/pr/trivial-fixes 
Some trivial fixes
 2015-11-04 09:45:59 -07:00
Mike Dubman
f4316b20bb Merge pull request #1099 from yosefe/topic/ucx-fix-request-destruct 
pml_ucx: fix request construct/destruct.
 2015-11-04 12:48:37 +02:00
yosefe
45c3d04857 pml_ucx: fix request construct/destruct. 
We should invoke OBJ_CONTRUCT/OBJ_DESTRUCT only on regular requests
(which are embedded inside UCX requests) and for the completed request.
Persistent requests are already constructed/destructed by the free list.
This fixes an assertion in ompi_request_destruct.
 2015-11-04 11:03:46 +02:00
Ralph Castain
169c44258d Fix missing check 2015-11-03 19:00:28 -08:00
KAWASHIMA Takahiro
d4bdf405bd opal/threads: Correct nsec -> usec conversion. 2015-11-04 11:28:43 +09:00
KAWASHIMA Takahiro
60546c6418 opal/datatype: Fix a macro value typo for heterogeneous. 
This affects behaiviors only on a heterogeneous environment.
 2015-11-04 11:28:43 +09:00
KAWASHIMA Takahiro
c09f9f05d3 mpi/tool: Fix an incorrect type cast. 
This bug caused an invalid result value on `MPI_T_cvar_read`
on big-endian machines or for large (>=2Gi) cvar values.
 2015-11-04 11:28:43 +09:00
KAWASHIMA Takahiro
2dcb2d711b Makefile: Move fd.c to SOURCES from headers. 
And reorder fd.h and few.h in alphabetical order.
 2015-11-04 11:28:43 +09:00
KAWASHIMA Takahiro
384f4b51d1 fortran: Fix: missing dimension(*) in (I)NEIGHBOR_ALLTOALLW. 2015-11-04 10:38:25 +09:00
KAWASHIMA Takahiro
1092eabfab fortran: Update comment. 
The structure was changed in commit 9c77c6b.
 2015-11-04 10:38:25 +09:00
KAWASHIMA Takahiro
107c0073dd fortran: Fix: MPI_UNWEIGHTED and MPI_WEIGHTS_EMPTY should be arrays. 
Without this modification, gfortran throw the following error
if these variables are used for `MPI_DIST_GRAPH_CREATE_ADJACENT` or
`MPI_DIST_GRAPH_CREATE_ADJACENT`.

  Error: There is no specific subroutine for the generic
  'mpi_dist_graph_create_adjacent' at (1)
 2015-11-04 10:38:25 +09:00
KAWASHIMA Takahiro
d5e1f40a1e fortran: Fix: info should be an integer parameter. 2015-11-04 10:38:24 +09:00
KAWASHIMA Takahiro
9bf93810d7 fortran: Fix: array dimension of MPI_ARGVS_NULL. 
`MPI_ARGVS_NULL` should be a two-dimensional array.
Without this modification, gfortran throw the following error
if `MPI_ARGVS_NULL` is used for `MPI_COMM_SPAWN_MULTIPLE`.

  Error: There is no specific subroutine for the generic
  'mpi_comm_spawn_multiple' at (1)
 2015-11-04 10:38:24 +09:00
Ralph Castain
fe0c995f6b Fix a couple of minor issues identified by Jeff 2015-11-03 17:30:51 -08:00
Ralph Castain
a66fc6f293 Update NEWS for 1.10.1 2015-11-03 17:13:59 -08:00
George Bosilca
b14212f142 Fix Coverity issue 1338059. 2015-11-02 22:51:52 -05:00
Todd Kordenbrock
cefe50cf54 mtl-portals4: test for valid handle before releasing resources 
During component finalize, mtl-portals4 would blindly release
resources without testing if the handle was valid.  This was OK,
but resource allocation is now delayed until add_procs().  If
mtl-portals4 is deselected, it will be finalized without
add_procs() ever being called.  This commit ensures that invalid
handles are not released.
 2015-11-02 21:01:14 -06:00
George Bosilca
5c60e76669 Fix Coverity CIDs 1338021, 1338020, 1338019, 1338018. 2015-11-02 17:38:51 -05:00