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Gilles Gouaillardet
e71452d73a Revert r32696
This commit was SVN r32697.

The following SVN revision numbers were found above:
  r32696 --> open-mpi/ompi@e4c3500166
2014-09-10 04:35:47 +00:00
Gilles Gouaillardet
e4c3500166 Fix MPI_Status_set_elements[_x] for non predefined datatypes
Fixes trac:4896

cmr=v1.8.3:reviewer=bosilca

This commit was SVN r32696.

The following Trac tickets were found above:
  Ticket 4896 --> https://svn.open-mpi.org/trac/ompi/ticket/4896
2014-09-10 02:41:29 +00:00
Ralph Castain
aae1bb4f44 Silence warning
This commit was SVN r32657.
2014-08-31 08:10:35 +00:00
Jeff Squyres
f4238d65a5 fortran: also provide PMPI variants for MPI_Alloc_mem_cptr
r32622 was the first half of the fix -- we need the PMPI variants as well.

Refs trac:4882

This commit was SVN r32627.

The following SVN revision numbers were found above:
  r32622 --> open-mpi/ompi@cf0f734a98

The following Trac tickets were found above:
  Ticket 4882 --> https://svn.open-mpi.org/trac/ompi/ticket/4882
2014-08-28 23:47:38 +00:00
Gilles Gouaillardet
cf0f734a98 Fortran: add mpi_alloc_mem_cptr like bindings when configured with --without-weak-symbols
cmr=v1.8.3:reviewer=jsquyres

This commit was SVN r32622.
2014-08-28 09:34:54 +00:00
Jeff Squyres
d85527701a Fix MPI_COMM_SPLIT_TYPE with MPI_UNDEFINED
Thanks to Lisandro Dalcin for identifying the problem.

Fixes trac:4876

Submitted by George Boscila, reviewed by Jeff Squyres.

cmr=v1.8.3:reviewer=ompi-rm1.8

This commit was SVN r32615.

The following Trac tickets were found above:
  Ticket 4876 --> https://svn.open-mpi.org/trac/ompi/ticket/4876
2014-08-27 12:17:33 +00:00
Gilles Gouaillardet
7e3784e0b7 MPI_Type_create_indexed_block.3: fix a typo in the man page
cmr=v1.8.3:reviewer=jsquyres

This commit was SVN r32614.
2014-08-27 03:48:03 +00:00
George Bosilca
8de93982d5 Correctly build the args for the hindexed_block datatype.
cmr=v1.8.3:reviewer=jsquyres

This commit was SVN r32613.
2014-08-27 03:45:07 +00:00
Jeff Squyres
3e78f7878c fortran: add missing bindings for WIN_SYNC, WIN_LOCK_ALL,
WIN_UNLOCK_ALL

cmr=v1.8.2:reviewer=hjelmn

This commit was SVN r32535.
2014-08-14 20:27:30 +00:00
Ralph Castain
70da69a4f3 Cleanup and ignore Intel compiler build products
This commit was SVN r32463.
2014-08-08 16:13:43 +00:00
Jeff Squyres
537aa674a5 fortran: remove a duplicate listing of this file
This fixes some duplicate symbols, once the .o files for the modules
were restored into the library (some compilers need the .o files, some
don't (!)).

Also, remove trailing whitespace.  :-)

This commit was SVN r32386.
2014-08-01 00:43:04 +00:00
Jeff Squyres
abbcde6cb9 fortran: add the .o's back into libmpi_usempif08
Thanks to Paul Hargrove for the massive hint to find this.

This commit was SVN r32385.
2014-07-31 23:41:47 +00:00
Ralph Castain
552c9ca5a0 George did the work and deserves all the credit for it. Ralph did the merge, and deserves whatever blame results from errors in it :-)
WHAT:    Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL

All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies.  This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP.  Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose.  UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs.  A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.

This commit was SVN r32317.
2014-07-26 00:47:28 +00:00
Jeff Squyres
8e80480cbc fortran: don't use optional params in the ompi/pompi interfaces
Fix a copy-n-paste error: the ompi/pompi interfaces should not have
optional ierror arguments.  Optional ierror arguments are only used in
the MPI_<foo> interfaces.  The ompi/pompi interfaces are the actual
underlying routines (in C, incidentally, which is why they're declared
as BIND(C)), and do not have optional ierror arguments.

Also fix a typo in the BIND(C) name for pompi_win_shared_query_f().

cmr=v1.8.2:reviewer=ggouaillardet

This commit was SVN r32287.
2014-07-22 21:51:29 +00:00
Jeff Squyres
4da3c85b54 fortran: revert Absoft-based fixes
Rever r32246, r32254, and 32255 -- they were fixing side-effects of
the real bug.  Real fix coming after this one.

This commit was SVN r32286.

The following SVN revision numbers were found above:
  r32246 --> open-mpi/ompi@08d2a1a48d
  r32254 --> open-mpi/ompi@232d4dbb7b
2014-07-22 21:49:22 +00:00
Gilles Gouaillardet
a7bfd6e766 fortran: fix compile issue with ABSoft compilers
one more fix ...

cmr=v1.8.2:ticket=trac:4792

This commit was SVN r32255.

The following Trac tickets were found above:
  Ticket 4792 --> https://svn.open-mpi.org/trac/ompi/ticket/4792
2014-07-17 07:38:13 +00:00
Gilles Gouaillardet
232d4dbb7b fortran: fix compile issue with ABSoft compilers
Simplify and fix the r32246

cmr=v1.8.2:ticket=trac:4792

This commit was SVN r32254.

The following SVN revision numbers were found above:
  r32246 --> open-mpi/ompi@08d2a1a48d

The following Trac tickets were found above:
  Ticket 4792 --> https://svn.open-mpi.org/trac/ompi/ticket/4792
2014-07-17 06:00:32 +00:00
Gilles Gouaillardet
08d2a1a48d fortran: fix compile issue with ABSoft compilers
ABSoft compilers cannot compile a fortran subroutine
with the BIND(C, NAME="name") modifier *and* argument(s)
with the OPTIONAL modifier

This patch detects this unsupported feature and use
adhoc wrappers if it is missing

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r32246.
2014-07-15 10:41:11 +00:00
Gilles Gouaillardet
ee9098e2ee Fix use-mpi-trk/Makefile.am
Always include into the tarball (aka 'make dist') :
 - mpi-f90-interfaces.h
 - mpi-f90-cptr-interfaces.F90

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32215.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-07-11 05:05:19 +00:00
Gilles Gouaillardet
77184b5c4c Fix a cornercase with MPI_PROC_NULL persistent requests
Handle OMPI_REQUEST_NOOP in MPI_Startall rather than PML

cmr=v1.8.2:reviewer=bosilca:ticket=4764

This commit was SVN r32213.

The following Trac tickets were found above:
  Ticket 4764 --> https://svn.open-mpi.org/trac/ompi/ticket/4764
2014-07-11 04:37:01 +00:00
Jeff Squyres
0089ac20af Fortran: put type(c_ptr) interfaces in a separate file in the TKR mpi module
Older gfortran compilers (e.g., the gfortran that ships in RHEL5) do
not support ISO_C_BINDING, and therefore do not support the
TYPE(C_PTR) type.  As such, they cannot support the overloaded
interfaces for MPI_WIN_ALLOCATE_SHARED and MPI_SHARED_QUERY that are
mandated in MPI-3.

So we separate those interfaces out into a separate .F90 file that is
#include'd in the tkr mpi.F90 file.  In this separate .F90 file, we
use an #if to determine whether the compiler supports ISO_C_BINDING or
not.

Also re-jiggered the order of testing in ompi_setup_mpi_fortran.m4: we
now need to test whether the compiler supports ISO_C_BINDING even when
we're only building the mpi module (not strictly when we're building
the mpi_f08 module).

Finally, tweaked the use-mpi-tkr/Makefile.am to:

* Add some proper dependencies for mpi.F90
* Allow the general AM compilation to be used instead of supplying a
  specific rule for compiling mpi.F90

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32204.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-07-10 19:10:03 +00:00
George Bosilca
2861419661 Correct trivial typos in man files and FUNC_NAME variables.
Patch provided by Fujitsu (Kawashima, Takahiro)

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r32190.
2014-07-10 01:47:23 +00:00
Jeff Squyres
5081f958a6 fortran: fix MPI_Win_allocate_shared and MPI_Win_shared_query
Several problems with MPI_Win_allocate_shared and MPI_Win_shared_query
were discovered in a code review.  This commit fixes them:

* Add _cptr versions of both subroutines in mpif-h, use-mpi-tkr, and
  use-mpi-ignore-tkr directories
* Fix case of PMPI weak symbols for both C implementations
* Add MPI and PMPI f08 implementations of both subroutines (there is
  no _cptr version in the mpi_f08 module)
* Fixed _f08 suffix on the f08 module of both subroutines

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32162.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-07-09 00:10:04 +00:00
Nathan Hjelm
1eb6ac5e80 mpit: update the return code check for mca_base_var_get
mca_base_var_get now can return OPAL_ERR_NOT_FOUND if a variable no
longer exists. This commit updates the return code check to ensure
the correct MPI_T error code is returned to the user.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r32161.
2014-07-08 21:17:47 +00:00
Gilles Gouaillardet
bd72628a9d Cleanup : fix the cornercase with MPI_PROC_NULL persistent requests.
This commit was SVN r32140.
2014-07-04 07:20:44 +00:00
Gilles Gouaillardet
8d3bea2771 Fix the cornercase with MPI_PROC_NULL persistent requests.
This corner case is now handled in the pml so the same code
is invoked for both MPI_Start and MPI_Startall.
This also correctly report an error if MPI_Startall is invoked twice
on a MPI_PROC_NULL persistent request.

This commit was SVN r32139.
2014-07-04 04:58:52 +00:00
George Bosilca
843ef1fcb0 ompi_mpi_abort had one extra argument that was never used. Clean it up.
This commit was SVN r32124.
2014-07-03 00:34:44 +00:00
Ralph Castain
f3cb124e50 Revert r32082 and r32070 - the developer's conference has decided to go a different direction on the threaded progress effort. This will involve some degree of prototyping to understand the tradeoffs prior to making a final design decision, and so we'll hold off on the final change until that is completed.
This commit was SVN r32089.

The following SVN revision numbers were found above:
  r32070 --> open-mpi/ompi@12d92d0c22
  r32082 --> open-mpi/ompi@aa6438ef7a
2014-06-25 20:43:28 +00:00
Jeff Squyres
fb9d063be2 Fortran: include the type functions (eq/ne) in libmpi_usempif08
This file has to be pre-emptively compiled to generate the module, but
then it also has to be included in libmpi_usempif08.

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32071.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-24 17:48:15 +00:00
Ralph Castain
12d92d0c22 Per the OMPI developer conference, remove the last vestiges of OMPI_USE_PROGRESS_THREADS
This commit was SVN r32070.
2014-06-24 17:05:11 +00:00
Gilles Gouaillardet
926e29c972 Fortran: add ompi/mpi/fortran/use-mpi-f08/mpi-f08-sizeof.F90 to the dist tarball.
cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32065.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-23 04:14:28 +00:00
Gilles Gouaillardet
d1f5d9f675 Fortran: fix OMPI_GENERATE_F77_BINDINGS macro invokation
Some parameters were ommited and compilation failed if
configured with --disable-weak-symbols

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32064.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-23 02:10:35 +00:00
Jeff Squyres
395078da00 Fortran: fix two type mistakes
Use the appropriate modules, don't use mpif-config.h.

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32052.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-19 20:25:09 +00:00
Jeff Squyres
8935e0a5e0 Fortran use-mpi-tkr: remove real*16 and complex*32 (for now)
There is more comprehensive work regarding MPI_SIZEOF coming, but the
Fortran working group in the MPI Forum is debating this internally,
and I'm still doing more testing to get a final solution.  So for the
moment, just remove real*16 and complex*32 support so that it compiles
porperly with older compilers (that do not support real*16 and
complex*32).

This commit was SVN r32048.
2014-06-19 18:12:53 +00:00
Jeff Squyres
b375808928 Fortran: add files accidentally skipped in r32042
cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32046.

The following SVN revision numbers were found above:
  r32042 --> open-mpi/ompi@fa764c1567

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-19 13:53:27 +00:00
Jeff Squyres
134c527f18 Fortran: Move all f08-related modules out of fortran/base
Move them all to fortran/use-mpi-f08, since that's the only directory
that uses them (the use-mpi-f08-desc directory has been disabled).

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32045.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-19 13:44:08 +00:00
Jeff Squyres
fa764c1567 Fortran: add missing implementation of win_allocate_shared and win_shared_query
Thanks to Michael Rachner for pointing out the issue.

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32042.

The following Trac tickets were found above:
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-19 13:38:25 +00:00
Jeff Squyres
2cbda4fe6d Fortran: fix a few ierr->ierror mistakes that crept in
Thanks for Walter Spector for raising the issue on the users list.

Refs trac:3582

cmr=v1.8.2:ticket=trac:4736

This commit was SVN r32041.

The following Trac tickets were found above:
  Ticket 3582 --> https://svn.open-mpi.org/trac/ompi/ticket/3582
  Ticket 4736 --> https://svn.open-mpi.org/trac/ompi/ticket/4736
2014-06-19 13:37:22 +00:00
Jeff Squyres
555073630e Fortran: remove the scripts from the use-mpi-tkr implementation
This is part one of several Fortran improvements and fixes.  This
first part removes the now-defunct scripts that are used to generate
the .f90 files in the use-mpi-tkr implementation, and just commits the
output from those scripts.  This makes long-term maintenance of the
use-mpi-tkr implementation simpler.

cmr=v1.8.2:reviewer=jsquyres:subject=Various Fortran fixes/improvements

This commit was SVN r32040.
2014-06-19 13:35:30 +00:00
Gilles Gouaillardet
e9ed9def02 Fix MPI_Alltoallv in coll/tuned
This changeset :
- always call the low/level implementation for :
  * MPI_Alltoallv
  * MPI_Neighbor_alltoallv
  * MPI_Alltoallw
  * MPI_Neighbor_alltoallv
- fix mca_coll_tuned_alltoallv_intra_basic_inplace
  so zero size types are correctly handled

cmr=v1.8.2:reviewer=bosilca:ticket=4715

This commit was SVN r32013.

The following Trac tickets were found above:
  Ticket 4715 --> https://svn.open-mpi.org/trac/ompi/ticket/4715
2014-06-17 06:11:34 +00:00
Nathan Hjelm
37ae430424 rma: fix locking/unlocking of MPI_PROC_NULL
It is valid to lock/unlock MPI_PROC_NULL. It probably isn't work tracking
whether MPI_PROC_NULL is locked for MPI_PROC_NULL RMA operations so this
is probably the permanent solution.

Closes trac:4720

Tracking the 1.8.2 issue with this CMR.

cmr=v1.8.2:reviewer=bbenton

This commit was SVN r32011.

The following Trac tickets were found above:
  Ticket 4720 --> https://svn.open-mpi.org/trac/ompi/ticket/4720
2014-06-17 04:41:49 +00:00
George Bosilca
84193fff6d More comprehensible error messages.
This commit was SVN r32007.
2014-06-16 20:23:16 +00:00
George Bosilca
f5ebd2faeb Fix the Fortran issue identified by Akan Sang Loon. The dist graph
is really special as the weights can be one of the following three
values (NULL, EMPTY or some legal value). As such, we need a complex
if to correctly convert the Fortran value to the corresponding C
value. Thus, always defining the c_ array is the simplest and most
straighforward approach.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31955.
2014-06-05 17:10:48 +00:00
Jeff Squyres
6cf49a3c57 Revert r31934: that MPI_Type_f2c.3 is already in the file list.
This commit was SVN r31950.

The following SVN revision numbers were found above:
  r31934 --> open-mpi/ompi@3ed4aaea99
2014-06-04 13:58:42 +00:00
Oscar Vega-Gisbert
c7b229f03e Java - slice methods: set buffer limit to its capacity before change its position
This commit was SVN r31943.
2014-06-03 21:32:27 +00:00
Jeff Squyres
3ed4aaea99 man pages: Add MPI_Type_f2c.3 file into the tarball
cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31934.
2014-06-03 18:28:50 +00:00
Jeff Squyres
87f9f6815f use-mpi-tkr: fix ierr->ierror param names
Issue noted by Walter Spector on the user's mailing list.

Throwing to Craig Rasmussen for review.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31933.
2014-06-03 15:26:02 +00:00
Gilles Gouaillardet
1a17a2a960 Fixes MEMCHECKER vs MPI_IN_PLACE in *alltoall*
cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31924.
2014-06-02 04:43:48 +00:00
Oscar Vega-Gisbert
cc219218a7 Java: update javadoc's install locations
This commit was SVN r31914.
2014-06-01 15:40:14 +00:00
Gilles Gouaillardet
40f3b849eb Fix argument checks for [i]neighbor_alltoall{v|w}
This fixes a bug introduced in :
 - r31815 (trunk) 
 - r31853 (v1.8 branch)

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31888.

The following SVN revision numbers were found above:
  r31815 --> open-mpi/ompi@8bafe06c57
  r31853 --> open-mpi/ompi@bff944d766
2014-05-23 08:19:17 +00:00