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24984 Коммитов

Автор SHA1 Сообщение Дата
Josh Hursey
b213c58e71 Merge pull request #1572 from jjhursey/fix/lsf-1570
ras/lsf: Fix affinity for MPMD jobs running under LSF
2016-04-22 14:15:04 -05:00
Joshua Hursey
29b49351af ras/lsf: Fix affinity for MPMD jobs running under LSF 2016-04-22 11:18:34 -05:00
George Bosilca
d379e23bf7 One less warning.
The heterogeneous code need to gracefully handly the contiguous
datatype loops in order to have the "#if 0" code path enabled again.
This is a performance issue (the correctness is guaranteed by the
current code).
2016-04-21 18:11:29 -04:00
Jeff Squyres
06eeeb3583 AUTHORS: Fix an errant reference to Subversion IDs
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-04-21 17:32:19 -04:00
Ralph Castain
c2c59db49c Add Mark Santcroos to AUTHORS - welcome, Mark! 2016-04-21 10:54:40 -07:00
Jeff Squyres
5892020238 Merge pull request #1568 from jsquyres/pr/make-symbol-check-only-on-git-clones
Makefile.am: only check for common symbols on dev builds
2016-04-20 17:13:25 -04:00
Jeff Squyres
62c45e4a09 Makefile.am: only check for common symbols on dev builds
Only run "find_common_syms" in the install-exec-hook when a .git
directory is present in the source dir.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-04-20 12:58:16 -07:00
Jeff Squyres
68c1a5eb6c Merge pull request #1567 from jsquyres/pr/fix-ompi-to-opal-name-conversion
m4: rename OMPI_SUMMARY_* macros to OPAL_SUMMARY_*
2016-04-20 13:10:06 -04:00
Nathan Hjelm
a40018c639 Merge pull request #1566 from hjelmn/new_hooks_update
memory/patcher: do not hook madvise if the syscall doesn't exist
2016-04-20 10:35:44 -06:00
Jeff Squyres
6800ef9ec0 m4: rename OMPI_SUMMARY_* macros to OPAL_SUMMARY_*
These macros should really be named OPAL_SUMMARY_*; they're used in
all projects, and therefore should be in the lowest later project (OPAL).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-04-20 08:40:00 -07:00
Nathan Hjelm
db854c368a memory/patcher: do not hook madvise if the syscall doesn't exist
Fixes open-mpi/ompi#1565

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-20 09:18:31 -06:00
Joshua Ladd
0d5a57d9d3 Merge pull request #1558 from vspetrov/hcoll_complex_dtype_support
Adds mapping to hcoll complex data type
2016-04-20 08:35:33 -04:00
Gilles Gouaillardet
490b538ad6 ompi/datatype: fix MPI_LONG_LONG_INT type name
MPI_LONG_LONG_INT is a named predefined datatype, so its name is now MPI_LONG_LONG_INT
MPI_LONG_LONG is a synonym of MPI_LONG_LONG_INT, and its name is also MPI_LONG_LONG_INT
2016-04-20 09:34:20 +09:00
Nathan Hjelm
1ff3d3b16b pml/ob1: fix coverity issue
Fix CID 1357978 (1 of 1): Logically dead code (DEADCODE):

Remove duplicate check for NULL == endpoint.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 14:48:13 -06:00
Nathan Hjelm
70533e6d50 fcoll/static: fix coverity issues
Fix CID 72362: Explicit null dereferenced (FORWARD_NULL)

From what I can tell the code @ fcoll_static_file_read_all.c:649
should be setting bytes_per_process[i] to 0 not bytes_per_process.

Fix CID 72361: Explicit null dereferenced (FORWARD_NULL)

Modified check to check for blocklen_per_process non-NULL before
trying to free blocklen_per_process[l]. This is sufficient because
free (NULL) is safe. Also cleaned up the initialization of this an a
couple other arrays. They were allocated with malloc() then
initialized to 0. Changed to used calloc().

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 14:48:13 -06:00
Nathan Hjelm
8871bdb2f8 fcoll/two_phase: fix coverity issues
Fix CID 72296: Resource leak (RESOURCE_LEAK):

Changed code to goto exit instead of returning to ensure memory is
freed.

Fix CID 712589: Out-of-bounds read (OVERRUN):

In this loop i and j are identical and always less than
iov_count. The CID was triggered because i was incremented if i was <
iov_count. This meant that if the loop did go on the next iteration
would access an invalid index.

Fix CID 741363: Uninitialized scalar variable (UNINIT):

Allocate tmp_len with calloc to insure every index is initialized.

Fix CID 741364: Uninitialized pointer read (UNINIT):

Allocate recv_types with calloc to ensure all indices are always
initialized. Also added a check to not loop and destroy if recv_types
is NULL.

Also added a NULL check on the allocation of decoded iov. This is not
the cause of CID 126784 but should be fixed.

Fix CID 712588: Out-of-bounds read (OVERRUN):

Similar to CID 712589. Should silence the issue.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 14:47:41 -06:00
Nathan Hjelm
fdd1ff7c29 Merge pull request #1562 from hjelmn/opal_coverity
mca/base: fix coverity issue
2016-04-19 14:29:05 -06:00
Nathan Hjelm
3f15d442de Merge pull request #1561 from hjelmn/mpool_rewrite
rcache/base: add missing file to tarball
2016-04-19 12:00:06 -06:00
Nathan Hjelm
b3abd5380b Merge pull request #1560 from hjelmn/new_hooks_update
Patcher hooks bug fixes
2016-04-19 11:39:30 -06:00
Nathan Hjelm
16c28399cd rcache/base: add missing file to tarball
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 11:03:38 -06:00
Nathan Hjelm
d981a9fc7d patcher/overwrite: fix compile error on x86
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:39 -06:00
Nathan Hjelm
5bc9d9d1f8 patcher/linux: fix compiler warnings
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:20 -06:00
Nathan Hjelm
1147fb3dd1 patcher/linux: ensure component is only enabled on Linux
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:00 -06:00
Valentin Petrov
21f1c572c0 Adds mapping to hcoll complex dte 2016-04-19 14:14:28 +03:00
Nathan Hjelm
178c97b406 Merge pull request #1557 from hjelmn/new_hooks_update
memory/patcher: munmap hook could be called from within a malloc() implementation
2016-04-18 17:29:05 -06:00
Nathan Hjelm
a8e90e8796 memory/patcher: munmap hook could be called from within a malloc() implementation
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-18 15:00:07 -06:00
Nathan Hjelm
95c06cf959 Merge pull request #1556 from hjelmn/opal_coverity
memory/patcher: fix coverity warning
2016-04-18 14:55:28 -06:00
Joshua Ladd
1c6218804b Merge pull request #1542 from igor-ivanov/pr/oshmem-spec1.3
Pr/oshmem spec1.3
2016-04-18 15:22:48 -04:00
Nathan Hjelm
7f271171f6 memory/patcher: fix coverity warning
Fix CID 1358512:  Error handling issues  (NEGATIVE_RETURNS):

C libraries usually handle read (-1, ...) fine but it is safer to
avoid calling read with a negative handle. Added negative file
descriptor check.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-18 11:29:20 -06:00
Igor Ivanov
75050b44a2 oshmem: Align OSHMEM API with spec v1.3 (extension api changes)
openshmem.org specification does not mention about extension api
but there is an agreemnet to do these changes for related ex api too.
see
Annex G:
Version 1.3
Added const to every read-only pointer argument
2016-04-18 19:38:16 +03:00
Igor Ivanov
157f81b699 oshmem: Align OSHMEM API with spec v1.3 (Added const to every read-only pointer argument)
Annex G:
Version 1.3
Added const to every read-only pointer argument
2016-04-18 19:25:31 +03:00
Igor Ivanov
c02d0b7161 oshmem: Align OSHMEM API with spec v1.3 (shmem_lock change signature)
Annex G:
Version 1.3
Added volatile to remotely accessible pointer argument in
SHMEM_LOCK
See Sections 8.9.1
2016-04-18 19:25:18 +03:00
Igor Ivanov
a52b0797fc oshmem: Align OSHMEM API with spec v1.3 (shmem_wait change signature)
Annex G:
Version 1.3
Added volatile to remotely accessible pointer argument in SHMEM_WAIT
See Sections 8.7.1
2016-04-18 19:24:55 +03:00
Nicolas Chevalier
c86d4035d2 coll-portals4: check return value from reduce kary tree functions 2016-04-18 12:02:30 +00:00
Gilles Gouaillardet
d96919638f pmix: remote autogenerated file and update .gitignore
removed: opal/mca/pmix/pmix114/pmix/src/include/private/autogen/config.h.in
2016-04-18 12:57:41 +09:00
rhc54
2be790447a Merge pull request #1554 from rhc54/topic/114update
Roll to PMIx 1.1.4rc2 - replaces some code that was incorrectly remov…
2016-04-16 19:35:38 -07:00
Ralph Castain
b009e58d25 Roll to PMIx 1.1.4rc2 - replaces some code that was incorrectly removed in prior update 2016-04-16 18:24:24 -07:00
rhc54
8cce6df688 Merge pull request #1553 from rhc54/topic/114update
Update to official PMIx 1.1.4rc1
2016-04-16 17:31:19 -07:00
Ralph Castain
8ff114e668 Update to official PMIx 1.1.4rc1 2016-04-15 21:47:46 -07:00
rhc54
fde5183f90 Merge pull request #1550 from rhc54/topic/jeff
Per request from Jeff, aggregate all help messages during MPI_Init th…
2016-04-15 16:50:13 -07:00
Ralph Castain
7829fbdc29 Per request from Jeff, aggregate all help messages during MPI_Init thru MPI_Finalize as long as the RTE is available 2016-04-15 13:37:22 -07:00
rhc54
6b38c0e1ef Merge pull request #1548 from rhc54/topic/pmix114
Roll to PMIx 1.1.4rc1 and remove the PMIx 1.2.0 directory...
2016-04-15 12:55:15 -07:00
Ralph Castain
449ec41532 Roll to PMIx 1.1.4rc1 and remove the PMIx 1.2.0 directory as the community has decided to not do that release version. This incorporates a number of bug fixes that have been identified and repaired in the PMIx and OMPI code bases. Also includes several minor corrections to the PMIx code so it now supports run-thru without hanging on collectives involving a process that exits 2016-04-15 10:11:11 -07:00
KAWASHIMA Takahiro
e854404570 fortran: Change the line order of #pragma
No code change.
These lines were introduced in my recent commit 17d32ac.
I had a editing mistake and the order is different from
other lines/files.
2016-04-15 12:49:03 +09:00
Nathan Hjelm
3245428e82 Merge pull request #1535 from kawashima-fj/pr/osc-pt2pt-header-fix
osc/pt2pt: Fix a struct name typo
2016-04-14 15:55:25 -06:00
Jeff Squyres
4566286b9a Merge pull request #1538 from kawashima-fj/pr/fortran-binding-fix
fortran: Fix many Fortran binding bugs
2016-04-14 17:18:59 -04:00
Nathan Hjelm
330302c4b4 Merge pull request #1534 from kawashima-fj/pr/parallel-rma-fix
osc/pt2pt: Fix tag conflicts on parallel RMA communications
2016-04-14 15:13:32 -06:00
Jeff Squyres
fdf33674b3 Merge pull request #1532 from kmroz/wip-hindexed-cleanup-1
romio,java: cleanup deprecated hindexed call
2016-04-14 17:07:31 -04:00
Jeff Squyres
2374d8fcf7 Merge pull request #1536 from kawashima-fj/pr/inplace-fix
mpi/c, mpi/fortran: Fix `MPI_IN_PLACE`-related bugs
2016-04-14 15:56:55 -04:00
Nathan Hjelm
b4e5b5c09e Merge pull request #1531 from hjelmn/bml
bml: always enable the bml
2016-04-14 10:22:33 -06:00