rename ompi/mpi/fortran/base/strings.h so it does not get pulled
when /usr/include/strings.h is expected.
Refs open-mpi/ompi#3639
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Convert the predefined MPI object padding to a fixed number of bytes
(vs. a multiple of sizeof(void*)) so that the padding is the same size
between 32 and 64 bit builds. I.e., we won't have a situation where
we've run out of padding in 32 bit builds but still have more space
available in 64 bit builds.
Fixes#3610
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
This commit moves the info subscribe for the blocking_fence to after
the global_state is allocated and moves setting win->w_osc_module to
before the info subscribe for alloc_shared_contig. This fixes a SEGV
caught by MTT.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Without this change, the directory of `javadoc` command must be
included in the `PATH` environment variable at `make`-time.
Paths of `javac`, `javah`, and `jar` commands are detected in
`configure`. So the path of `javadoc` also should be detected.
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
a buffer defined by (buf, count, dt)
will have data starting at buf+offset and ending len bytes later with
len = opal_datatype_span(&dt.super, count, &offset);
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
This commit removes a nonexistent function that was causing build
problems under certain environments.
Reference #3442
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
A component with implementation of R. Rabenseifner's algorithm for Reduce and Allreduce.
This algorithm is a combination of a reduce-scatter implemented with recursive vector halving
and recursive distance doubling, followed either by a gather or an allgather.
Current limitations:
-- count >= 2^{\floor{\log_2 p}}
-- commutative operations only
-- intra-communicators onl
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
coll/spacc: Modify implementation to use `ompi_coll_base_sendrecv()`
Replace irecv() + isend() + ompi_request_wait() to ompi_coll_base_sendrecv().
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
origin_datatype and target_datatype might be different and hence have different extent,
so use either origin_extent or target_extent when appropriate.
Refs open-mpi/ompi#3569
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
All other man pages don't have an empty line after
the "! or the older form: INCLUDE 'mpif.h'" line
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
The osc_rdma_get_remote_segment() has the 3rd and 4th args as
* target_disp
* length
which it uses to determine if the rdma falls within the bounds of
the window or not (actually it only checks the upper bound, but I'm
okay with that).
Anyway the caller previously was passing in the length argument as
target_datatype->super.size * target_count
which which doesn't really represent the number of bytes after target_disp
for which data exists. In particular I could create a datatype as
{ disp -4, len 4 } and use target_disp 4
and that would be bytes 0-3 of the window where the original code
would think it was bytes 4-7 and could abort at the range check.
Ive changed it to use the opal_datatype_span() function.
Signed-off-by: Mark Allen <markalle@us.ibm.com>
Yalla has a macro PML_YALLA_INIT_MXM_REQ_DATA that checks if a datatype
is contiguous via opal_datatype_is_contiguous_memory_layout(dt,count)
and if so it selects a size and lb that presumably is what will rdma, as
ompi_datatype_type_size(_dtype, &size); \
ompi_datatype_type_lb(_dtype, &lb); \
This failed when I gave it a datatype constructed as [ ...] with extent 4.
What I mean by that datatype is
lens[0] = 3;
disps[0] = 1;
types[0] = MPI_CHAR;
MPI_Type_struct(1, lens, disps, types, &tmpdt);
MPI_Type_create_resized(tmpdt, 0, 4, &mydt);
So there are 3 chars at offset 1, and the LB is 0 and the UB is 4.
So that macro decides that size=4 and lb=0 and later I suppose size is getting
updated to 3 for the final rdma, and so a send of a buffer
[ 0 1 2 3 ] gets recved as [ 0 1 2 _ ]. I think it should use the true lb
and the true extent.
For "regular" contig datatypes it would be the same, and for the irregular
ones that are still deemed contiguous by that utility function it should
still be the right thing to use.
Signed-off-by: Mark Allen <markalle@us.ibm.com>
See bug report
https://github.com/open-mpi/ompi/issues/3548
If a 1sided test is launched -host hostA:2,hostB:1 some of the ranks
call allocate_state_single() and others call allocate_state_shared().
These functions were producing different values for module->state_size
but that's used when they lookup peer info from each other in
ompi_osc_rdma_peer_setup() so they need to all have matching
module->state_offset values.
This change adds a few unused bytes in the memory allocate_state_single()
creates so it matches.
Signed-off-by: Mark Allen <markalle@us.ibm.com>
Finally Merging this in. MPI_*_get_info/set_info().
Targeting v3.1 release. @hjelmn were you interested in switching some internal pieces to begin using this? Should we target v3.1 (or whatever we call the Oct 15th release?)
The expected sequence of events for processing info during object creation
is that if there's an incoming info arg, it is opal_info_dup()ed into the obj
at obj->s_info first. Then interested components register callbacks for
keys they want to know about using opal_infosubscribe_infosubscribe().
Inside info_subscribe_subscribe() the specified callback() is called with
whatever matching k/v is in the object's info, or with the default. The
return string from the callback goes into the new k/v stored in info, and
the input k/v is saved as __IN_<key>/<val>. It's saved the same way
whether the input came from info or whether it was a default. A null return
from the callback indicates an ignored key/val, and no k/v is stored for
it, but an __IN_<key>/<val> is still kept so we still have access to the
original.
At MPI_*_set_info() time, opal_infosubscribe_change_info() is used. That
function calls the registered callbacks for each item in the provided info.
If the callback returns non-null, the info is updated with that k/v, or if
the callback returns null, that key is deleted from info. An __IN_<key>/<val>
is saved either way, and overwrites any previously saved value.
When MPI_*_get_info() is called, opal_info_dup_mpistandard() is used, which
allows relatively easy changes in interpretation of the standard, by looking
at both the <key>/<val> and __IN_<key>/<val> in info. Right now it does
1. includes system extras, eg k/v defaults not expliclty set by the user
2. omits ignored keys
3. shows input values, not callback modifications, eg not the internal values
Currently the callbacks are doing things like
return some_condition ? "true" : "false"
that is, returning static strings that are not to be freed. If the return
strings start becoming more dynamic in the future I don't see how unallocated
strings could support that, so I'd propose a change for the future that
the callback()s registered with info_subscribe_subscribe() do a strdup on
their return, and we change the callers of callback() to free the strings
it returns (there are only two callers).
Rough outline of the smaller changes spread over the less central files:
comm.c
initialize comm->super.s_info to NULL
copy into comm->super.s_info in comm creation calls that provide info
OBJ_RELEASE comm->super.s_info at free time
comm_init.c
initialize comm->super.s_info to NULL
file.c
copy into file->super.s_info if file creation provides info
OBJ_RELEASE file->super.s_info at free time
win.c
copy into win->super.s_info if win creation provides info
OBJ_RELEASE win->super.s_info at free time
comm_get_info.c
file_get_info.c
win_get_info.c
change_info() if there's no info attached (shouldn't happen if callbacks
are registered)
copy the info for the user
The other category of change is generally addressing compiler warnings where
ompi_info_t and opal_info_t were being used a little too interchangably. An
ompi_info_t* contains an opal_info_t*, at &(ompi_info->super)
Also this commit updates the copyrights.
Signed-off-by: Mark Allen <markalle@us.ibm.com>
This commit fixes a race condition in the rendezvous protocol. The
race occurs because the sender does not wait for the link event on the
send buffer. Even though this has not been seen in the wild, it is
possible for the receiver to issue the PtlGet() before the ME is
linked which causes a NAK at the receiver. This commit resolves this
race by reissuing the PtlGet() when a NAK occurs.
Signed-off-by: Todd Kordenbrock <thkgcode@gmail.com>
ompi_communicator_t, ompi_win_t, ompi_file_t all have a super class of type opal_infosubscriber_t instead of a base/super type of opal_object_t (in previous code comm used c_base, but file used super). It may be a bit bold to say that being a subscriber of MPI_Info is the foundational piece that ties these three things together, but if you object, then I would prefer to turn infosubscriber into a more general name that encompasses other common features rather than create a different super class. The key here is that we want to be able to pass comm, win and file objects as if they were opal_infosubscriber_t, so that one routine can heandle all 3 types of objects being passed to it.
MPI_INFO_NULL is still an ompi_predefined_info_t type since an MPI_Info is part of ompi but the internal details of the underlying information concept is part of opal.
An ompi_info_t type still exists for exposure to the user, but it is simply a wrapper for the opal object.
Routines such as ompi_info_dup, etc have all been moved to opal_info_dup and related to the opal directory.
Fortran to C translation tables are only used for MPI_Info that is exposed to the application and are therefore part of the ompi_info_t and not the opal_info_t
The data structure changes are primarily in the following files:
communicator/communicator.h
ompi/info/info.h
ompi/win/win.h
ompi/file/file.h
The following new files were created:
opal/util/info.h
opal/util/info.c
opal/util/info_subscriber.h
opal/util/info_subscriber.c
This infosubscriber concept is that communicators, files and windows can have subscribers that subscribe to any changes in the info associated with the comm/file/window. When xxx_set_info is called, the new info is presented to each subscriber who can modify the info in any way they want. The new value is presented to the next subscriber and so on until all subscribers have had a chance to modify the value. Therefore, the order of subscribers can make a difference but we hope that there is generally only one subscriber that cares or modifies any given key/value pair. The final info is then stored and returned by a call to xxx_get_info.
The new model can be seen in the following files:
ompi/mpi/c/comm_get_info.c
ompi/mpi/c/comm_set_info.c
ompi/mpi/c/file_get_info.c
ompi/mpi/c/file_set_info.c
ompi/mpi/c/win_get_info.c
ompi/mpi/c/win_set_info.c
The current subscribers where changed as follows:
mca/io/ompio/io_ompio_file_open.c
mca/io/ompio/io_ompio_module.c
mca/osc/rmda/osc_rdma_component.c (This one actually subscribes to "no_locks")
mca/osc/sm/osc_sm_component.c (This one actually subscribes to "blocking_fence" and "alloc_shared_contig")
Signed-off-by: Mark Allen <markalle@us.ibm.com>
Conflicts:
AUTHORS
ompi/communicator/comm.c
ompi/debuggers/ompi_mpihandles_dll.c
ompi/file/file.c
ompi/file/file.h
ompi/info/info.c
ompi/mca/io/ompio/io_ompio.h
ompi/mca/io/ompio/io_ompio_file_open.c
ompi/mca/io/ompio/io_ompio_file_set_view.c
ompi/mca/osc/pt2pt/osc_pt2pt.h
ompi/mca/sharedfp/addproc/sharedfp_addproc.h
ompi/mca/sharedfp/addproc/sharedfp_addproc_file_open.c
ompi/mca/topo/treematch/topo_treematch_dist_graph_create.c
ompi/mpi/c/lookup_name.c
ompi/mpi/c/publish_name.c
ompi/mpi/c/unpublish_name.c
opal/mca/mpool/base/mpool_base_alloc.c
opal/util/Makefile.am
OMPI send and receive mesages use size_t for the lenght while PSM and PSM2
psm(2)mq_send/receive use uint32_t. Type size_t is 64 bits in 64 bits arch.
Therefore, this patch adds a sanity check on the lenght of the message
and fails gracefully.
Signed-off-by: Matias Cabral <matias.a.cabral@intel.com>
* Don't overflow the internal datatype count.
Change the type of the count to be a size_t (it does not alter the total
size of the internal structures, so has no impact on the ABI).
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Optimize the datatype creation.
The internal array of counts of predefined types is now only created
when needed, which is either in a heterogeneous environment, or when
one call get_elements. It saves space and makes the convertor creation a
little faster in some cases.
Rearrange the fields in the datatype description structs.
The macro OPAL_DATATYPE_INIT_PTYPES_ARRAY had a bug, and the
static array was only partially created. All predefined types should
have the ptypes array created and initialized.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Fix the boundary computation.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* test/datatype: add test for short unpack on heteregeneous cluster
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Trying to reduce the cost of creating a convertor.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Respect the unpack boundaries.
As Gilles suggested on #2535 the opal_unpack_general_function was
unpacking based on the requested count and not on the amount of packed
data provided.
Fixes#2535.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
When we updated UFS and others we left NFS alone. HDF group would like
a fix, so here we go.
Signed-off-by: Ken Raffenetti <raffenet@mcs.anl.gov>
(back-ported from upstream commit pmodels/mpich@684df9f4c9)
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
