ports/openmpi
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Автор SHA1 Сообщение Дата
Gilles Gouaillardet
907c095f66 Merge pull request #779 from edgargabriel/topic/fcoll_fixes 
Topic/fcoll fixes
 2015-08-07 09:14:31 +09:00
Jeff Squyres
b5c37dbfe2 CSCuv67889: usnic: fix an error corner case 
Ensure that we have non-NULL on all levels of pointers, which will
save us if there are exitable errors very early during component /
module initialization.
 2015-08-06 10:54:28 -07:00
Jeff Squyres
c9e91ff4fc .gitignore: add man page in CUDA extension 2015-08-06 06:49:33 -07:00
Jeff Squyres
982455aaa4 autogen.pl: ensure to patch *all* Autotools output 
Per open-mpi/ompi#751, ensure to patch up all Autotools output (not
just in some cases).

Also, adjust the patching process to only write our verbose statements
and a new configure script if the content actually changed as result
of the patching.
 2015-08-06 04:38:44 -07:00
Rolf vandeVaart
731cfe3e46 Merge pull request #777 from rolfv/pr/cudaext-build-always 
Build always and fix return value
 2015-08-05 18:13:58 -04:00
Howard Pritchard
10aac8037f mca/topo: suppress picky warning 
When configured with --enable-picky

topo_base_lazy_init.c compiles with a warning:

  CC       base/topo_base_lazy_init.lo
base/topo_base_lazy_init.c:46:67: warning: implicit conversion from enumeration type 'enum mca_base_register_flag_t' to different enumeration type 'mca_base_open_flag_t' (aka 'enum mca_base_open_flag_t') [-Wenum-conversion]
        err = mca_base_framework_open (&ompi_topo_base_framework, MCA_BASE_REGISTER_DEFAULT);

This commit fixes this implicit conversion problem.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-08-05 16:11:04 -06:00
Jeff Squyres
98b5551126 openmpi-nightly-tarball: update libfabric install location 2015-08-05 17:57:07 -04:00
Rolf vandeVaart
cb84a85d17 Build always and fix return value 2015-08-05 17:23:55 -04:00
Howard Pritchard
1b55d14dff plm/alps: remove unneded env. variable setting 
In order to address issue #741, the orted's now are
always launched with the Cray PMI environment variables

PMI_NO_FORK
PMI_NO_PREINITIALIZE

set to disable running of the library's ctor.
So there's no longer a need to set these for the
application(s) being launched by the orted's.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-08-05 13:27:18 -07:00
Edgar Gabriel
16d4171f6b the individual component should call internal ompio functions directly. The reason is that otherwise 
the redirection to the ompi_file_t structure (and back to the ompio internal structure) is ambiguise and wrong
for the shared file pointer scenario.
 2015-08-05 14:31:11 -05:00
Edgar Gabriel
02a4eb2f13 add the ompi_file_t pointer correctly on the ompio file handle for the sm and individual component. 2015-08-05 14:28:27 -05:00
Jeff Squyres
ae0de54f6c Merge pull request #774 from jsquyres/pr/FUNCTION-fixes 
__FUNCTION__ --> __func__ fixes
 2015-08-05 09:59:49 -04:00
Jeff Squyres
5065978a1e oshmem: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
Jeff Squyres
a36d7e6026 treematch: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
Jeff Squyres
a0ebbee6ef libnbc: __FUNCTION__ -> __func__ fixes 2015-08-05 05:27:23 -07:00
Gilles Gouaillardet
3d1780f1a2 sharedfp: set f_fh when opening a shared file 2015-08-05 15:07:21 +09:00
Nathan Hjelm
6265aaa354 Merge pull request #771 from hjelmn/lifo_fix 
opal/lifo: add missing opal_atomic_wmb and remove unnecessary opal_atomic_rmb
 2015-08-04 14:02:29 -06:00
Nathan Hjelm
6003a4dae1 opal/lifo: add missing opal_atomic_wmb and remove unnecessary opal_atomic_rmb 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-04 08:54:06 -06:00
Nathan Hjelm
45a8e8daff Merge pull request #770 from hjelmn/fifo_fix 
opal/fifo: add missing memory barrier
 2015-08-04 08:46:59 -06:00
Nathan Hjelm
9abccbd9fc opal/fifo: add missing memory barrier 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-03 16:22:28 -06:00
Howard Pritchard
36d7855280 Merge pull request #763 from nrgraham23/status_x_java_bindings 
Status x java bindings
 2015-08-03 09:26:16 -06:00
Gilles Gouaillardet
2fa8f4d53a Revert "fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used" 
Optimization was incorrect, so revert this commit.

This reverts commit 83375bcc5c.
 2015-08-03 08:45:12 +09:00
rhc54
e6017c802d Merge pull request #768 from rhc54/topic/segfault 
Fix an annoying segfault caused by incorrect indentation in a loop th…
 2015-08-01 11:10:37 -07:00
Ralph Castain
9bc384282a Fix an annoying segfault caused by incorrect indentation in a loop that causes the buffer to not be created prior to packing. 2015-08-01 10:01:47 -07:00
Jeff Squyres
f86a0c9f33 Merge pull request #765 from jsquyres/pr/usnic-libfabric-11-configury-update 
usnic libfabric 1.1 configury update
 2015-07-31 21:54:10 -04:00
Jeff Squyres
cbcd16b399 usnic: remove a stale shell variable name 2015-07-31 18:53:54 -07:00
Jeff Squyres
0ee8295e6e usnic: ensure that we have libfabric >= v1.1 2015-07-31 18:53:54 -07:00
Howard Pritchard
e4f1de3d3a Merge pull request #767 from hppritcha/topic/lanl_platform 
contrib/lanl: update Makefile
 2015-07-31 16:25:48 -06:00
Howard Pritchard
d4eb5addb0 contrib/lanl: update Makefile 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-31 14:38:48 -07:00
rhc54
c6cc1a9707 Merge pull request #766 from rhc54/topic/hwloc 
Update x86_32 cpuid assembly code.
 2015-07-31 12:53:16 -07:00
Jeff Squyres
2e7f794aae usnic: convert to use fi_recvmsg / FI_MORE 
Minor optimization to post 16 receive buffers at a time (vs. 1).
 2015-07-31 12:45:40 -07:00
Jeff Squyres
047eccef8d Merge pull request #725 from bosilca/treematch 
Add a new topo module: Treematch
 2015-07-31 15:17:54 -04:00
Ralph Castain
b42545b0cb Update x86_32 cpuid assembly code. Cheery-picked from 
open-mpi/hwloc@40f9978bcc
 2015-07-31 11:40:38 -07:00
Howard Pritchard
8649a9f6ef Merge pull request #757 from roblatham00/lustre-excl-open-fix 
hint processing should not open files
 2015-07-31 12:16:14 -06:00
Howard Pritchard
f18988c06f Merge pull request #764 from nrgraham23/Datatype.java_comment_fixes 
Commenting fixes for Datatype.java
 2015-07-31 12:03:04 -06:00
rhc54
a9b10cfbf0 Merge pull request #761 from jithinjosepkl/master 
Fix warnings in direct (pml-cm,mtl-ofi) build
 2015-07-31 09:15:30 -07:00
Ralph Castain
29d6044f7e Update 1.8.8 NEWS items 2015-07-30 17:48:31 -07:00
Edgar Gabriel
ffa67b9693 Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with 
our optimized default file view. Otherwise, performance will suffer. file_get_view should still return the correct filetype, not our optimized default file view
 2015-07-30 19:15:00 -05:00
Edgar Gabriel
93a303ba89 Performance tuning: make sure the individual component is selected for 1 and 2 process communicators (important for some benchmarks) 2015-07-30 17:31:16 -05:00
Edgar Gabriel
9b2a7e41f0 make sure the final number of aggregators is recorded correctly when not using 
our aggregator selection logic.
 2015-07-30 17:24:01 -05:00
Nathaniel Graham
57b95fff2e Commenting fixes for Datatype.java 
Some of the @code tags were incorrect.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:17:55 -06:00
Nathaniel Graham
17c606b35c White Space Fixes 
Github revealed some wierd spacing issues.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:07:19 -06:00
Nathaniel Graham
2fecb06059 Status X Functons 
Includes java bindings for MPI_GET_ELEMENTS_X and
MPI_STATUS_SET_ELEMENTS_X.  This PR also adds the
Count object which represents MPI_Count.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:00:13 -06:00
Howard Pritchard
ac4197fb1b Merge pull request #760 from nrgraham23/request_get_status_java 
Java binding for MPI_REQUEST_GET_STATUS
 2015-07-30 13:57:06 -06:00
rhc54
21dde0bd6e Merge pull request #762 from nysal/topic/mrecv 
Fix an invalid memory access in mrecv & imrecv
 2015-07-30 10:43:38 -07:00
Rob Latham
6e9cbe397f hint processing should not open files 
move opening of files from hint processing and into open routines.

This is MPICH commit 92f1c69f0de8 and 22a77dceda11

see https://trac.mpich.org/projects/mpich/ticket/2261
Ref: https://github.com/open-mpi/ompi/issues/158

Signed-off-by: Pavan Balaji <balaji@anl.gov>
 2015-07-30 12:25:20 -05:00
Nysal Jan K.A
5a7bd898f9 Fix an invalid memory access in mrecv & imrecv 
After the call to PML mrecv/imrecv, the message handle
is set to MPI_MESSAGE_NULL. Use the cached communicator
while invoking the error handler.
 2015-07-30 19:52:40 +05:30
Jithin Jose
bc4e8b7e73 Fix warnings in direct (pml-cm,mtl-ofi) build 
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
 2015-07-29 15:49:37 -07:00
Howard Pritchard
ea6f5b31fd Merge pull request #749 from nrgraham23/additional_comm_java_bindings 
Additional java bindings for the Comm class
 2015-07-29 16:17:54 -06:00
Edgar Gabriel
477083bca3 the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 2015-07-29 17:13:55 -05:00