Debugger daemons do not count against available slots. Clean up some leftover errors from the upgrade to HWLOC 2 in the mappers. Properly flag debugger jobs that come in via PMIx.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Still in the "needs to be done" category:
* mapping/ranking/binding options aren't correctly supported
* if the DVM encounters some errors (e.g., not enough resources for the job), the resulting error is globally set and impacts any subsequent job submission
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Unlike "orterun", "prun" is a PMIx-only program that discovers the DVM connection instead of requiring that we explicitly provide it. Only build "prun" if PMIx v2.x is available.
This gets the DVM working again, but still is showing problems for multiple executions. I'll detail those in a separate issue. Thus, the DVM should still be considered "broken".
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
to choose the first available non-socket provider.
modified: orte/mca/rml/ofi/rml_ofi_component.c
modified: orte/mca/rml/ofi/rml_ofi_send.c
Signed-off-by: Anandhi Jayakumar <anandhi.s.jayakumar@intel.com>
* Even if we are only launching one app context, we might call spawn
later and the remote groups might want their global rank information.
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
* Resolves#3705
* Components should link against the project level library to better
support `dlopen` with `RTLD_LOCAL`.
* Extend the `mca_FRAMEWORK_COMPONENT_la_LIBADD` in the `Makefile.am`
with the appropriate project level library:
```
MCA components in ompi/
$(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la
MCA components in orte/
$(top_builddir)/orte/lib@ORTE_LIB_PREFIX@open-rte.la
MCA components in opal/
$(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la
MCA components in oshmem/
$(top_builddir)/oshmem/liboshmem.la"
```
Note: The changes in this commit were automated by the script in
the commit that proceeds it with the `libadd_mca_comp_update.py`
script. Some components were not included in this change because
they are statically built only.
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
There can be multiple [heap] consecutively in proc/<pid>/maps,
and there's no room between them.
Don't use a hole after the first [heap] is there's another [heap]
immediately after it.
This code would fail to find the last [heap] if there were multiple
[heap] interleaved with non-heap VMA, but our kind "after heap"
wouldn't be meaningful anymore anyway.
Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
always re-initialize vmhole *before* mca_base_component_var_register()
otherwise the vmhole gets NULL'ified if orte is initialized a second time.
that typically occurs when Open MPI is configure'd with --disable-dlopen
and the app does MPI_T_init_thread(); MPI_T_finalize(); MPI_T_init_thread();
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
It turns out that the approach of having the HNP do the
fork/exec of MPI ranks on the head node in a SLURM environment
introduces problems when users/sysadmins want to use the SLURM
scancl tool or sbatch --signal option to signal a job.
This commit disables use of the HNP fork/exec procedure when
a job is launched into a SLURM controlled allocation.
update NEWS with a blurb about new ras framework mca parameter.
related to #3998
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
Update to support passing of HWLOC shmem topology to client procs
Update use of distance API per @bgoglin
Have the openib component lookup its object in the distance matrix
Bring usnic up-to-date
Restore binding for hwloc2
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
passed to make it all flow thru the opal/pmix "put/get" operations. Update the PMIx code to latest master to pickup some required behaviors.
Remove the no-longer-required get_contact_info and set_contact_info from the RML layer.
Add an MCA param to allow the ofi/rml component to route messages if desired. This is mainly for experimentation at this point as we aren't sure if routing wi
ll be beneficial at large scales. Leave it "off" by default.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
`send_error()` is only packing status and peer info in the reply.
While remote counterpart in `pmix_server_dmdx_resp()` expects
the "hotel room number" to proceed correctly.
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
Passed the below set of symbols into a script that added ompi_ to them all.
Note that if processing a symbol named "foo" the script turns
foo into ompi_foo
but doesn't turn
foobar into ompi_foobar
But beyond that the script is blind to C syntax, so it hits strings and
comments etc as well as vars/functions.
coll_base_comm_get_reqs
comm_allgather_pml
comm_allreduce_pml
comm_bcast_pml
fcoll_base_coll_allgather_array
fcoll_base_coll_allgatherv_array
fcoll_base_coll_bcast_array
fcoll_base_coll_gather_array
fcoll_base_coll_gatherv_array
fcoll_base_coll_scatterv_array
fcoll_base_sort_iovec
mpit_big_lock
mpit_init_count
mpit_lock
mpit_unlock
netpatterns_base_err
netpatterns_base_verbose
netpatterns_cleanup_narray_knomial_tree
netpatterns_cleanup_recursive_doubling_tree_node
netpatterns_cleanup_recursive_knomial_allgather_tree_node
netpatterns_cleanup_recursive_knomial_tree_node
netpatterns_init
netpatterns_register_mca_params
netpatterns_setup_multinomial_tree
netpatterns_setup_narray_knomial_tree
netpatterns_setup_narray_tree
netpatterns_setup_narray_tree_contigous_ranks
netpatterns_setup_recursive_doubling_n_tree_node
netpatterns_setup_recursive_doubling_tree_node
netpatterns_setup_recursive_knomial_allgather_tree_node
netpatterns_setup_recursive_knomial_tree_node
pml_v_output_close
pml_v_output_open
intercept_extra_state_t
odls_base_default_wait_local_proc
_event_debug_mode_on
_evthread_cond_fns
_evthread_id_fn
_evthread_lock_debugging_enabled
_evthread_lock_fns
cmd_line_option_t
cmd_line_param_t
crs_base_self_checkpoint_fn
crs_base_self_continue_fn
crs_base_self_restart_fn
event_enable_debug_output
event_global_current_base_
event_module_include
eventops
sync_wait_mt
trigger_user_inc_callback
var_type_names
var_type_sizes
Signed-off-by: Mark Allen <markalle@us.ibm.com>
(1) rml_ofi_transports mca parameter. This parameter should have the list of transports (currently ethernet,fabric are valid)
fabric is higher priority if provided.
(2) ORTE_RML_TRANSPORT_TYPE key with values "ethernet" or "fabric". "fabric" is higher priority.
If specific provider is required use ORTE_RML_OFI_PROV_NAME key with values "socket" or "OPA" or any other supported in system.
modified: ../orte/mca/rml/ofi/rml_ofi.h
modified: ../orte/mca/rml/ofi/rml_ofi_component.c
modified: ../orte/mca/rml/ofi/rml_ofi_send.c
On send_msg choose the provider on local and peer to follow below rules -
1. if the user specified the transport for this conduit (even giving us a prioritized list of candidates), then the one we selected is the _only_ one we will use. If the remote peer has a matching endpoint, then we use it - otherwise, we error out
2. if the user didn't specify a transport, then we look for matches against _all_ of our available transports, starting with fabric and then going to Ethernet, taking the first one that matches.
3. if we can't find any match, then we error out
modified: ../orte/mca/rml/ofi/rml_ofi.h
modified: ../orte/mca/rml/ofi/rml_ofi_component.c
modified: ../orte/mca/rml/ofi/rml_ofi_send.c
send_msg() -> Fixed case when the local provider chosen at time of opening conduit
is not present in peer (destination) node
modified: ../orte/mca/rml/ofi/rml_ofi.h
modified: ../orte/mca/rml/ofi/rml_ofi_send.c
When opening conduit, checking for the transport preference in below order -
(1) rml_ofi_transports mca parameter. This parameter should have the list of transports (currently ethernet,fabric are valid)
fabric is higher priority if provided.
(2) ORTE_RML_TRANSPORT_TYPE key with values "ethernet" or "fabric". "fabric" is higher priority.
If specific provider is required use ORTE_RML_OFI_PROV_NAME key with values "socket" or "OPA" or any other supported in system.
modified: ../orte/mca/rml/ofi/rml_ofi.h
modified: ../orte/mca/rml/ofi/rml_ofi_component.c
modified: ../orte/mca/rml/ofi/rml_ofi_send.c
On send_msg choose the provider on local and peer to follow below rules -
1. if the user specified the transport for this conduit (even giving us a prioritized list of candidates), then the one we selected is the _only_ one we will use. If the remote peer has a matching endpoint, then we use it - otherwise, we error out
2. if the user didn't specify a transport, then we look for matches against _all_ of our available transports, starting with fabric and then going to Ethernet, taking the first one that matches.
3. if we can't find any match, then we error out
modified: ../orte/mca/rml/ofi/rml_ofi.h
modified: ../orte/mca/rml/ofi/rml_ofi_component.c
modified: ../orte/mca/rml/ofi/rml_ofi_send.c
send_msg() -> Fixed case when the local provider chosen at time of opening conduit
is not present in peer (destination) node
modified: ../orte/mca/rml/ofi/rml_ofi.h
modified: ../orte/mca/rml/ofi/rml_ofi_send.c
Signed-off-by: Anandhi Jayakumar <anandhi.s.jayakumar@intel.com>
Reference: https://bugzilla.kernel.org/show_bug.cgi?id=15272.
Work with both stdin/stdout fds that are known to be always
ready using libevent timers.
Such fds can not be effectively used with non-blocking I/O
functions like epoll, poll, select:
- for poll/select the event will be triggered immediately;
- for epoll `epoll_ctl` will reject an attempt to add this
fd to the working set.
Reference: http://www.wangafu.net/~nickm/libevent-book/Ref4_event.html
Libevent suggests to use timers over event_active for the
reasons provided by the link above.
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
Regular files are always write-ready, so non-blocking I/O does not
give any benefits for them.
More than that - if libevent is using "epoll" to track fd events,
epoll_ctl will refuse attempt to add an fd pointing to a regular
file descriptor with EPERM.
This fix checks the object referenced by fd and avoids event_add
using event_active instead.
In the original configuration that uncovered this issue "epoll"
was used in libevent, it was triggering the following warning
message:
"[warn] Epoll ADD(1) on fd 0 failed. Old events were 0; read
change was 1 (add); write change was 0 (none): Operation not
permitted"
And the side effect was accumulation of all output in mpirun
memory and actually writing it only at mpirun exit.
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
Remove the opal_ignore from the RML/OFI component, but disable that component unless the user specifically requests it via the "rml_ofi_desired=1" MCA param. This will let us test compile in various environments without interfering with operations while we continue to debug
Fix an error when computing the number of infos during server init
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
This now passes the loop test, and so we believe it resolves the random hangs in finalize.
Changes in PMIx master that are included here:
* Fixed a bug in the PMIx_Get logic
* Fixed self-notification procedure
* Made pmix_output functions thread safe
* Fixed a number of thread safety issues
* Updated configury to use 'uname -n' when hostname is unavailable
Work on cleaning up the event handler thread safety problem
Rarely used functions, but protect them anyway
Fix the last part of the intercomm problem
Ensure we don't cover any PMIx calls with the framework-level lock.
Protect against NULL argv comm_spawn
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
the 'hostname' command might not be available on some platforms
such as Fedora Core 26, so mimick config/libtool.m4 and fallback
to 'uname -n' if needed
Refs. #3680
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Cleanup the way we look for matching OFI addresses by using the opal_net_samenetwork helper function. This now works for multi-network environments, but only using the socket provider
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Start updating the various mappers to the new procedure. Remove the stale lama component as it is now very out-of-date. Bring round_robin and PPR online, and modify the mindist component (but cannot test/debug it).
Remove unneeded test
Fix memory corruption by re-initializing variable to NULL in loop
Resolve the race condition identified by @ggouaillardet by resetting the
mapped flag within the same event where it was set. There is no need to
retain the flag beyond that point as it isn't used again.
Add a new job attribute ORTE_JOB_FULLY_DESCRIBED to indicate that all the job information (including locations and binding) is included in the launch message. Thus, the backend daemons do not need to do any map computation for the job. Use this for the seq, rankfile, and mindist mappers until someone decides to update them.
Note that this will maintain functionality, but means that users of those three mappers will see large launch messages and less performant scaling than those using the other mappers.
Have the mindist module add procs to the job's proc array as it is a fully described module
Protect the hnp-not-in-allocation case
Per path suggested by Gilles - protect the HNP node when it gets added in the absence of any other allocation or hostfile
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Fix the --nolocal option by ensuring we always check/remove the HNP from the list of available nodes if the flag is set
Ensure that the HNP node is included as available when nothing else is given
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
On unmanaged allocations, we need to update the total_slots_allocated once the daemons have been launched and "discovered" their topology
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Do not pass param file MCA params if the user has requested that no param files be read - required when trying to avoid launch time penalties from large numbers of processes reading default param files. The daemon picks them up and passes them along anyway, so it isn't clear what value we gain from having them all read the defaults
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
This PR renames the common library for OFI libfabric from
libfabric to ofi. There are a number of reasons this
is good to do:
1) its shorter and replaces 9 characters with three for
function names for what may eventually be a fairly extensive interface
2) OFI is the term used for MTL and RML components that use
the OFI libfabric interface
3) A planned OSC component will also use the OFI term.
4) Other HPC libraries that can use OFI libfabric tend to use
the term "ofi" internally and also in their configure options
relevant to OFI libfabric (i.e. MPICH/CH4, Intel MPI, Sandia SHMEM)
There seem to be comments in places in the Open MPI source
code that indicate that this common library will be going away.
Far from it as we will want to be able to share things like
AV objects between OMPI and possibly OSHMEM components that
use the OFI libfabric interface.
This PR also adds a synonym to the --with-libfabric(-libdir)
configury options: --with-ofi and with-ofi-libdir.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
This commit recategorizes several mpirun arguments,
and moves the information for mpirun --help arguments
to the bottom of the general help message. I also
added the OPAL_CMD_LINE_OTYPE field to two commands
that were missed initially because they were not
in the same area as the others.
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
The fact that application proc called Abort (read failed) doesn't
mean that ORTE subsystem has failed - vice versa it does it's work
to gracefuly exit the whole application.
orted exiting with non-zero status creates a problem for at least
plm/slurm environments where orteds are launched via `srun` with
"--kill-on-bad-exit" flag. If one of orteds has exited with non-
zero status slurm will immediately kill all other orteds. As the
result we see a lot of leftover in the `/tmp` directory.
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
This commit adds new timing feature that uses environment variables to
expose timing information. This allows easy access to this data (if
timing is enabled) from any other part of the application for the subsequent
postprocessing.
In particular this will be integrated with OMPI-level timing framework that
whill use MPI_Reduce functionality to provide more compact and easy-to use
information.
This commit also adds the example of usage of this framework by annotating
rte_init function. The result is not used anywhere for now. It will be
postprocessed in subsequent commits.
NOTE: that functionality is currently disabled untill it will be verified at runtime
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
Output a (hopefully) helpful message when we timeout an operation
Thanks to Nathan for tracking it down.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
This commit modifies the output from the mpirun --help
command. The options have been split into groups, to
make the output smaller and more readable. The groups
are: general, debug, output, input, mapping, ranking,
binding, devel, compatibility, launch, dvm, and
unsupported. There is also a special "full" command
that can be used to get the old behaviour of printing
out all of the options. Unsupported options may only
be seen with this full output.
This commit also adds a special case for the help
argument. It makes it possible for the user to
enter 0 or 1 arguments instead of having to always
enter an argument. This defaults to printing out
the "general" help options so the user can then
see what help arguments there are.
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
Set the daemons' state to "running" and mark them as "alive" by default when constructing the nidmap
Get the DVM running again
Fix direct modex by eliminating race condition caused by releasing data while sending it
Up the size limit before compressing
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Two updates:
1. Remove the "run as root" error message from orterun.c, because that
functionality is now in orted_submit.c (although it is still
required in orte-dvm.c -- so sync the message in orted_submit.c and
orte-dvm.c to be identical).
2. Slightly tweak the text of the "run as root" error message to
explicitly state that we (strongly) suggest running as a non-root
user (and add a little whitespace).
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Remove loadleveler as it is obsolescent and is no longer supported.
Fixes#3167
We'll wait for final check of whether or not loadleveler even
compiles/functions before merging this.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
onto the backend daemons. By default, let mpirun only pack the app_context
info and send that to the backend daemons where the mapping will
be done. This significantly reduces the computational time on mpirun as it isn't
running up/down the topology tree computing thousands of binding
locations, and it reduces the launch message to a very small number of
bytes.
When running -novm, fall back to the old way of doing things
where mpirun computes the entire map and binding, and then sends
the full info to the backend daemon.
Add a new cmd line option/mca param --fwd-mpirun-port that allows
mpirun to dynamically select a port, but then passes that back to
all the other daemons so they will use that port as a static port
for their own wireup. In this mode, we no longer "phone home" directly
to mpirun, but instead use the static port to wireup at daemon
start. We then use the routing tree to rollup the initial
launch report, and limit the number of open sockets on mpirun's node.
Update ras simulator to track the new nidmap code
Cleanup some bugs in the nidmap regex code, and enhance the error message for not enough slots to include the host on which the problem is found.
Update gadget platform file
Initialize the range count when starting a new range
Fix the no-np case in managed allocation
Ensure DVM node usage gets cleaned up after each job
Update scaling.pl script to use --fwd-mpirun-port. Pre-connect the daemon to its parent during launch while we are otherwise waiting for the daemon's children to send their "phone home" rollup messages
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Per a prior commit, the presence of "hwloc.h" can cause ambiguity when
using --with-hwloc=external (i.e., whether to include
opal/mca/hwloc/hwloc.h or whether to include the system-installed
hwloc.h).
This commit:
1. Renames opal/mca/hwloc/hwloc.h to hwloc-internal.h.
2. Adds opal/mca/hwloc/autogen.options to tell autogen.pl to expect to
find hwloc-internal.h (instead of hwloc.h) in opal/mca/hwloc.
3. s@opal/mca/hwloc/hwloc.h@opal/mca/hwloc/hwloc-internal.h@g in the
rest of the code base.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
This fixes a mismatch between PS listing that returned
USERNAME but code was pruning based on UID.
This changes the OPAL_PS_FLAVOR_CHECK format to return
'uid' instead of 'user'. (Note: Avoiding call to
getlogin_r() but assuming UID is uniform on system,
same assumption exists for session dir anyway.)
Note, still maintains behavior from man page for root
running orte-clean on node (kills all orteds).
Adds 'orte-dvm' to list of procnames that will be checked/killed.
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
Add ability to pass DVM URI purely via environment
to simplify invocation from command-line (e.g., start dvm,
export URI, mpirun w/o needing to add `--hnp` arg).
If user passes both envvar *and* cmdline, the cmdline wins.
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
Ensure that job errors do not cause the DVM to fail unless the failed job is the DVM itself.
Refs #2987, with improvements from Ralph
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Need to check the entire value instead of just the last N digits. Otherwise, "-host 15" will match nid0015, nid0115, and any other launch id ending in 15
It appears strtol can return either a NULL or a zero-length string, so check for both cases
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
This update should fix the mpirun man page so all
mpirun command line options are included, and
mpirun commands that have been removed are no
longer in the man page. I also fixed some of
the file formatting, and bolding of command
parameters.
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
Allow someone to specify the "pe=N" modifier to a mapping policy when N=1. This equates to just "bind-to core", but helps people who use a script to set the PE policy. Fix a bug where setting the binding policy left a lingering "if-supported" flag that shouldn't be there.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Set the orte_bound_at_launch MCA variable. This resolves a launch
performance bug when using aprun to launch Open MPI processes. If
this variable is not set it can take minutes longer to launch with
high ppn.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
* Similar to the other launchers (i.e., slurm, alps) we need to put the
children in a separate process group to prevent SIGINT (from a CTRL-C)
from being delivered to the whole process group and prematurely
killing the rsh/ssh connections to the remote daemons.
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
Fix the check for rsh/ssh so we allow the check for SGE and LoadLeveler to occur if user doesn't specify their own launch agent. Fix a Coverity warning
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Register namespace even if there is no node-local processes that
belongs to it. We need this for the MPI_Spawn case.
Addressing https://github.com/open-mpi/ompi/issues/2920.
Was introduced in be3ef77739.
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
