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Ralph Castain
61fb067f14 Update the opal_hotel class to support a given event base instead of defaulting to using opal_event_base 2015-07-11 06:42:23 -07:00
Jeff Squyres
efc4c93d7a MPI_Scatter.3in: fix typo 
Thanks to Akshay Venkatesh for noticing the mistake.
 2015-07-10 20:11:39 -07:00
Howard Pritchard
4a3ca9d9b8 Merge pull request #710 from nrgraham23/javadoc_warnings_fix 
Javadoc warnings fix
 2015-07-10 19:08:38 -06:00
Nathaniel Graham
6bca7486c5 Added suppression statements. 
There are a few places where adding the @param for the variable
javadoc wants does not make sense, so I added suppression statements
in those areas.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 16:04:22 -06:00
Jeff Squyres
633da6641e usnic: gracefully handle when we can't alloc an ACK 
The comment didn't match the debugging code (which was ugly, and
apparently never happens, anyway).  Just return and let the sender
retransmit.
 2015-07-10 14:19:33 -07:00
Rolf vandeVaart
06dbcc1b25 Merge pull request #708 from rolfv/pr/cuda-macro-fix-minor 
Minor rewrite of text and comments
 2015-07-10 15:32:03 -04:00
Nathaniel Graham
580251e96a Fixes for javadoc warnings. 
Added missings @params and @throws as well as adding definitions for the @throws tags.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 12:59:45 -06:00
Howard Pritchard
8e16dda08e Merge pull request #703 from nrgraham23/more_one-sided_bindings 
More one sided bindings
 2015-07-10 12:47:07 -06:00
Rolf vandeVaart
5ee2505174 Minor rewrite of text and comments 2015-07-10 13:50:06 -04:00
Nathaniel Graham
7f6d141bd6 More one sided java bindings. 
Bindings for the MPI_WIN_FLUSH_LOCAL, MPI_WIN_FLUSH_LOCAL_ALL, MPI_WIN_ALLOCATE, MPI_WIN_ALLOCATE_SHARED, and MPI_COMM_SPLIT_TYPE.  Also added several necessary constants.

Signed-off-by: Nathaniel Graham ngraham@lanl.gov
 2015-07-10 11:40:18 -06:00
Jeff Squyres
3327fa56b5 usnic: minor code cleanups 2015-07-10 10:10:43 -07:00
Howard Pritchard
e9d6c7a910 Merge pull request #693 from nrgraham23/additional_java_bindings 
Additional java bindings
 2015-07-10 11:10:29 -06:00
Rolf vandeVaart
337dda0484 Merge pull request #706 from rolfv/pr/fix-mpiext-config 
One word change from none to all - new default
 2015-07-10 12:41:53 -04:00
Ralph Castain
2ac1942a75 Prep NEWS for 1.8.7 2015-07-10 08:49:27 -07:00
Rolf vandeVaart
f1fff56d74 One word change from none to all - new default 2015-07-10 11:23:22 -04:00
Jeff Squyres
f9c65a701e usnic: "sin" assignment needs to be outside the #if 
The "sin" variable is used below; need to ensure that it is assigned
for all builds (not just debug builds).
 2015-07-10 06:51:03 -07:00
Jeff Squyres
cd87c8ad41 usnic: misc compiler warnings fixes 2015-07-10 06:51:03 -07:00
Jeff Squyres
ba429dc890 usnic: temporarily disable the BTL put method 
The usnic BTL put method is currently broken.  Disable it until we can
fix it properly.
 2015-07-10 06:51:03 -07:00
Jeff Squyres
f265358fbe usnic: handle FI_MSG_PREFIX differences libfabric v1.0.0->v1.1.0 
In libfabric v1.0.0 (i.e., API v1.0), the usnic provider handled
FI_MSG_PREFIX inconsistently between sends and receives.  This has
been fixed in libfabric v1.1.0 (i.e., API v1.1): FI_MSG_PREFIX is
handled consistently for both sends and receives.

Run-time detect which libfabric we are running with and adapt behavior
appropriately.
 2015-07-10 06:51:03 -07:00
Jeff Squyres
ddd0de6cfc usnic: make more OS-bypass memory Valgrind-defined 
This helps reduce false positives when running MPI apps through
Valgrind.
 2015-07-10 06:51:03 -07:00
Jeff Squyres
9bc7a54e0c usnic: correctly count CRC errors 
Handle the differences between libfabric v1.0.0 and v1.1.0 in the
return value of fi_cq_readerr().

Also consolidate CRC and truncation errors into the same handling
block, since truncation errors are typically another symptom of CRC
errors.  This ensures that buffers get reposted properly.
 2015-07-10 06:51:03 -07:00
Jeff Squyres
fc686f5538 usnic: make configure complain if libfabric cannot be found 
Instead of silently determining that the usnic BTL can't be built,
announce that usnic is checking for libfabric support, and then
AC_MSG_RESULT the result of that check.
 2015-07-10 06:45:33 -07:00
Jeff Squyres
4341639a66 Revert "configury: fix (again) XRC detection on OFED < 3.12" 
@ggouaillardet is likely offline for the weekend, but master is broken
on RHEL 6.5 systems that do not have MOFED installed.  So I'm taking
the liberty of revering this commit; I'm guessing Gilles will fixup
and re-commit next week.

This reverts commit 77f8282d51d8f40f6ae988ef84c9c852de75c625.
 2015-07-10 06:45:33 -07:00
Gilles Gouaillardet
77f8282d51 configury: fix (again) XRC detection on OFED < 3.12 
since ibv_create_xrc_rcv_qp is now deprecated, and in order to
be "future-proof", we have to consider the case in which only XRC Domains are supported.

Thanks Paul Hargrove for the detailled report.
 2015-07-10 15:31:45 +09:00
Gilles Gouaillardet
9a49d42f81 configury: fix XRC detection on OFED < 3.12 
Thanks Paul Hargrove for the report
 2015-07-10 10:21:46 +09:00
Rolf vandeVaart
8be2c9759b Merge pull request #702 from rolfv/pr/fix-cuda-mca-register 
Make explicit call to initalize MCA parameters in common CUDA code.
 2015-07-09 15:37:22 -04:00
Rolf vandeVaart
ae0f3cfee7 Make explicit call to initalize MCA parameters in common CUDA code. This allows us to view them with ompi_info and possibly modify with tools interface 2015-07-09 12:51:55 -04:00
Edgar Gabriel
95c144c4b6 make the f08 interface actually compile. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
601e5efca8 add the manpages for the new MPI-3.1 non-blocking collective I/O operations. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
19994ff60d add fortran interfaces to the new nb collective I/O functions 2015-07-09 10:58:14 -05:00
Edgar Gabriel
01f752a504 make the c interface functions compile and work and start with the fortran interface functions. 2015-07-09 10:58:13 -05:00
Edgar Gabriel
f2af8e94ff - first cut on the io interface changes 
- add the C interfaces for the new non-blocking collective I/O functions of MPI 3.1
 2015-07-09 10:58:13 -05:00
bosilca
c0e0510db4 Merge pull request #698 from rolfv/pr/smcuda-ipc-perf-fix 
Force smcuda BTL to use CUDA IPC path for all GPU buffers where possible
 2015-07-09 09:54:32 +02:00
Gilles Gouaillardet
8eede3c7f1 configury: fix a typo in XRC support detection 
Thanks to Ben Menadue for the report
 2015-07-09 13:37:49 +09:00
Rolf vandeVaart
cdffa4724d Force smcuda BTL to use CUDA IPC path for all GPU buffers where possible 2015-07-08 17:11:25 -04:00
Rolf vandeVaart
77950374a5 Merge pull request #695 from rolfv/pr/fix-previous-cuda-macro-change 
Fix errors from previous commit
 2015-07-08 12:59:10 -04:00
Mike Dubman
099d7411e9 Merge pull request #696 from yosefe/topic/yalla-fix-config 
yalla: fix mxm configuration parsing.
 2015-07-08 19:56:59 +03:00
yosefe
103cac5bd9 yalla: fix mxm configuration parsing. 
Take configuration from MXM_MPI_xx instead of MXM_PML_xx, same as mtl
mxm.
 2015-07-08 19:18:23 +03:00
Rolf vandeVaart
1229dd3ed6 Fix errors from previous commit 2015-07-08 11:46:52 -04:00
Rolf vandeVaart
2797f5b8fc Merge pull request #694 from rolfv/pr/update-cuda-macro 
Some minor cleanup and renaming of query function.
 2015-07-08 11:09:17 -04:00
Rolf vandeVaart
6372baa7b9 Some minor cleanup and renaming of query function. 2015-07-08 10:17:35 -04:00
Jeff Squyres
d5e16839e9 mpi_f08: restore C/Fortran compatibility with F08 BUFFER_DETACH 
The C int/Fint interoperability code was erroneously removed when this
function was moved to the use-mpi-f08 directory.
 2015-07-08 03:55:50 -07:00
Nathaniel Graham
26c528a627 Copyright additions 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:14:21 -06:00
Howard Pritchard
68c69d07ff add copyrights to changed java related files 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-07 16:10:58 -06:00
Nathaniel Graham
982a232955 Additional Java Bindings 
Java bindings for the following functions: MPI_RACCUMULATE, MPI_GET_ACCUMULATE, MPI_RGET_ACCUMULATE, MPI_WIN_LOCK_ALL, MPI_WIN_UNLOCK_ALL, MPI_WIN_SYNC, MPI_WIN_FLUSH, MPI_WIN_FLUSH_ALL, MPI_COMPARE_AND_SWAP, and MPI_FETCH_AND_OP.  Also includes Java bindings for the Operations MPI_REPLACE and MPI_NO_OP.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:04:17 -06:00
rhc54
c6bb227073 Merge pull request #692 from rhc54/topic/mapper 
Fix hetero operations. An error in the hwloc utilities only allocated…
 2015-07-07 13:33:42 -07:00
Ralph Castain
ed93154e43 Fix hetero operations. An error in the hwloc utilities only allocated memory for the first display of a binding map, and then assumed that all nodes had the same number of cores in them. This resulted in memory corruption whenever someone displayed a binding pattern for a hetero cluster, and a smaller node was first in line. 2015-07-07 12:52:16 -07:00
rhc54
a4aff5e3d9 Merge pull request #691 from rhc54/topic/mapper 
Add a bunch of debug, and correct an error that caused us to use the …
 2015-07-07 11:08:01 -07:00
Ralph Castain
7455802a36 Add a bunch of debug, and correct an error that caused us to use the wrong mapping policy when determining the default binding policy 2015-07-07 10:13:10 -07:00
Jeff Squyres
4b8967f532 Merge pull request #690 from jsquyres/pr/really-fix-f08-buffer-detatch-really-really-really 
mpi_f08: move the f08 version of buffer_detach to use-mpi-f08
 2015-07-07 11:17:27 -04:00