ports/openmpi
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Ben Menadue
17dcc7041a Hold off running hwloc:external feature tests until after we decide if we're using the internal or external component. This fixes #6430. 
Signed-off-by: Ben Menadue <ben.menadue@nci.org.au>
 2019-02-25 16:58:11 +11:00
Howard Pritchard
9b3a9c2579
Merge pull request #6417 from abouteiller/bugfix/cart_create_cid 
Cart/Graph create would not run the next_cid  algorithm
 2019-02-22 13:05:59 -07:00
Howard Pritchard
d6cdbdfd39
Merge pull request #6412 from hppritcha/topic/fix_pgi_usempif08 
fortran:fix for PGI linking
 2019-02-21 20:31:14 -07:00
Ralph Castain
c054d4d1cc Ensure we push/pop local AC vars in the right place 
Signed-off-by: Ralph Castain <rhc@pmix.org>
 2019-02-21 13:28:10 -08:00
Ralph Castain
cd1b5641be Update slurm pmi configury to account for pmix 
When Slurm is built against PMIx, some installations place a copy of the
PMIx library that Slurm is linking against in the Slurm PMI location.
Current configury ignores that location. The desired behavior is to look
for a PMIx lib in that location when --with-pmi is given. If the user
also specifies --with-pmix and gives a different location, then override
anything previously found and look for it where the user directed.

Signed-off-by: Ralph Castain <rhc@pmix.org>
 2019-02-21 11:33:35 -08:00
Aurelien Bouteiller
fb17115ba9
Cart/Graph create would not run the next_cid algorithm and create 
disjoint communicator with inconsistent cid.

Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
 2019-02-21 11:40:22 -05:00
Ralph Castain
d2f8737f5a
Merge pull request #6415 from rhc54/topic/sing 
Remove stale singularity/schizo component
 2019-02-20 18:47:57 -08:00
Ralph Castain
2f15379171 Remove stale singularity/schizo component 
Signed-off-by: Ralph Castain <rhc@pmix.org>
 2019-02-20 17:38:24 -08:00
Howard Pritchard
266bc3aced fortran:use mpif08 fix for PGI linking 
commit c6070fd2e broke building fortran bindings
with PGI compilers.  Turns out PGI compilers need
to link in the *.o from a module file whether or
not there are module subroutines defined or not in
the module file.

Related to #6411

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2019-02-20 12:33:25 -07:00
Nuria Losada
3cae149262 osc/rdma: fix when determining the node with the rank_array info for a peer 
Signed-off-by: Nuria Losada <nlosada@icl.utk.edu>
 2019-02-20 13:12:00 -05:00
Artem Polyakov
13a8e42108
Merge pull request #6163 from artpol84/osc/mt_submission 
Refactoring of osc/ucx component for MT
 2019-02-20 09:41:27 -08:00
Jeff Squyres
170d5d119e
Merge pull request #6409 from dmitrygladkov/topic/btl/tcp 
btl/tcp: Fix copy-paste misprint
 2019-02-20 12:12:18 -05:00
Dmitry Gladkov
9920da4992 btl/tcp: Fix copy-paste misprint 
Signed-off-by: Dmitry Gladkov <dmitrygla@mellanox.com>
 2019-02-20 11:18:02 +02:00
Gilles Gouaillardet
8d12bb25c2
Merge pull request #6408 from ggouaillardet/topic/orte_cleanup 
Misc ORTE related cleanups
 2019-02-20 17:00:13 +09:00
Gilles Gouaillardet
ad114be28c configury: automatically select rte/pmix runtime if ORTE project is not built 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-02-20 13:55:55 +09:00
Gilles Gouaillardet
69d136ae5e ompi/pmix: fix misc OPAL function calls 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-02-20 13:55:55 +09:00
Gilles Gouaillardet
e0e924c4ed oshmem/wrappers: only install ORTE based wrappers if ORTE is built 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-02-20 13:55:55 +09:00
Gilles Gouaillardet
10cb9f6f9e oshmem: remove unnecessary dependencies to ORTE 
either use OPAL or OMPI layers, since ORTE layer
is not present when PMIx RTE is used

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-02-20 13:55:55 +09:00
Gilles Gouaillardet
18f679efac
Merge pull request #6401 from ggouaillardet/topic/osc_rdma_self 
osc/rdma: correctly handle communications to self
 2019-02-20 11:43:22 +09:00
KAWASHIMA Takahiro
19cbd00db0
Merge pull request #6403 from kawashima-fj/pr/man-typo-win-attach 
man: fix more typos in MPI_Win_attach man page
 2019-02-20 11:27:38 +09:00
KAWASHIMA Takahiro
7095ad10a5 man: fix more typos in MPI_Win_attach man page 
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
 2019-02-20 11:22:38 +09:00
Gilles Gouaillardet
7694ecc13f
Merge pull request #6402 from ggouaillardet/topic/man_win_attach_detach 
man: fix typos in MPI_Win_{attach,detach} man pages
 2019-02-20 11:11:09 +09:00
Gilles Gouaillardet
7c0596819b man: fix typos in MPI_Win_{attach,detach} man pages 
no code change

[skip ci]
bot:notest

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-02-20 11:09:45 +09:00
Gilles Gouaillardet
fe05fcc11a osc/rdma: correctly handle communications to self 
mark the "self" peer OMPI_OSC_RDMA_PEER_LOCAL_BASE when
the window is dynamically created and use_cpu_atomics is set
in order to correctly handle communications to self.

Thanks Bart Janssens for reporting this issue.

Refs. open-mpi/ompi#6394

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-02-20 09:52:17 +09:00
Artem Polyakov
91d6115d99 opal/common/ucx: Adjust the threasholds for periodical flushes 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
3aadc2b5e1 opal/common/ucx: Fix periodical flush in the worker pool 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
84dfe1277c opal/common/ucx: Rename wpool recv_worker to dflt_worker 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
8a990c2b64 opal/common/ucx: Add comments clarifying data structures 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
19e2ae2efb opal/common/ucx: Switch to opal/tsd 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
7984d7d997 opal/common/ucx: Remove unused debugging macro 
Will be reintroduced later if needed and after adaptation to the OMPI
infrastructure.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
43f16d8796 opal/common/ucx: Remove common_ucx_int.h 
Place the content of common_ucx_int.h back to the common_ucx.h and
include common_ucx_wpool.h explicitly.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
c6de09940f ompi/osc/ucx: Switch osc/ucx code to use Worker Pool. 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
bb7d360621 opal/common/ucx: add refcnt in tlocal_ctx_tbl entry to keep track of usage 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
101036651b opal/common/ucx: Fix the bug in wpool's periodical flush 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
bcb52ecade opal/common/ucx: add winfo ptr into req 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
33517428a1 opal/common/ucx: add periodical flush and counter to opal directory. 
Signed-off-by: Xin Zhao <xinz@mellanox.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
1fa7054041 opal/common/ucx: use trylock in opal_common_progress 
Signed-off-by: Xin Zhao <xinz@mellanox.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
2d3cffe1a3 opal/common/ucx: replace opal_mutex_t with opal_recursive_mutex_t 
Signed-off-by: Xin Zhao <xinz@mellanox.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
aa26a724ed opal/common/ucx: introduce internal UCX request in wpool. 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
07cb4134be opal/common/ucx: Set of bug fixes in wpool 
Signed-off-by: Xin Zhao <xinz@mellanox.com>
 2019-02-19 14:22:07 -08:00
Xin Zhao
344bb641a1 opal/common/ucx: Minor changes in wpool 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
9fb9cfbe8e opal/common/ucx: Simplify Worker Pool TLS structure 
Get rid of unneeded context and memory region identifiers

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:07 -08:00
Artem Polyakov
1e7bf7085d opal/common/ucx: Improve/fix debug output macro's 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:06 -08:00
Artem Polyakov
fd98ee14eb opal/common/ucx: Code cleanup 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:06 -08:00
Artem Polyakov
f38c9f3e5f opal/common/ucx: Simplify Worker Pool memory handler 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:06 -08:00
Artem Polyakov
6b7acdf21f opal/common/ucx: Somplify Worker Pool context management 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:06 -08:00
Xin Zhao
8b7fa927ba opal/common/ucx: Add fetch primitives to wpool 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:06 -08:00
Xin Zhao
bfbf818fe1 opal/common/ucx: Complete initialization of the Worker Pool 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:06 -08:00
Artem Polyakov
e28fadb048 opal/common/ucx: Introduce Worker Pool (wpool) functionality 
Worker Pool is an object containing/managing a set of UCX workers
and providing access to those workers through a smal interface
to allow Multi-Threaded applicatoins to access multiple HW contexts.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-02-19 14:22:06 -08:00
Ralph Castain
c9d0393158
Merge pull request #6397 from rhc54/topic/oops 
Restore orted hnp_uri cmd line option
 2019-02-18 15:13:18 -08:00