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Автор SHA1 Сообщение Дата
Nathan Hjelm
cf377db823 MCA/base: Add new MCA variable system
Features:
 - Support for an override parameter file (openmpi-mca-param-override.conf).
   Variable values in this file can not be overridden by any file or environment
   value.
 - Support for boolean, unsigned, and unsigned long long variables.
 - Support for true/false values.
 - Support for enumerations on integer variables.
 - Support for MPIT scope, verbosity, and binding.
 - Support for command line source.
 - Support for setting variable source via the environment using
   OMPI_MCA_SOURCE_<var name>=source (either command or file:filename)
 - Cleaner API.
 - Support for variable groups (equivalent to MPIT categories).

Notes:
 - Variables must be created with a backing store (char **, int *, or bool *)
   that must live at least as long as the variable.
 - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of
   mca_base_var_set_value() to change the value.
 - String values are duplicated when the variable is registered. It is up to
   the caller to free the original value if necessary. The new value will be
   freed by the mca_base_var system and must not be freed by the user.
 - Variables with constant scope may not be settable.
 - Variable groups (and all associated variables) are deregistered when the
   component is closed or the component repository item is freed. This
   prevents a segmentation fault from accessing a variable after its component
   is unloaded.
 - After some discussion we decided we should remove the automatic registration
   of component priority variables. Few component actually made use of this
   feature.
 - The enumerator interface was updated to be general enough to handle
   future uses of the interface.
 - The code to generate ompi_info output has been moved into the MCA variable
   system. See mca_base_var_dump().

opal: update core and components to mca_base_var system
orte: update core and components to mca_base_var system
ompi: update core and components to mca_base_var system

This commit also modifies the rmaps framework. The following variables were
moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode,
rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables.

This commit was SVN r28236.
2013-03-27 21:09:41 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Ralph Castain
cf9796accd Remove the old configure option for disabling full rte support - we now use the OMPI rte framework for such purposes
This commit was SVN r28134.
2013-02-28 01:35:55 +00:00
Ralph Castain
72bea688f1 Fix typo
This commit was SVN r27717.
2012-12-23 18:13:39 +00:00
Ralph Castain
852a709c0e Add libopen-pal to the libraries as all these tools directly reference OPAL functions, and the list of OS's that don't support indirect linking grows (Mac and Ubuntu, for now).
This commit was SVN r27716.
2012-12-23 15:54:05 +00:00
Nathan Hjelm
2acd0f83de Revert "Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter".
It appears the problem was not with the command line parser but the rsh plm. I don't know why this problem was not occuring before the command line parser changes but it appears to be resolved now.

This commit was SVN r27527.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-30 19:45:18 +00:00
Ralph Castain
e6014bf2e1 Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter
This commit was SVN r27477.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-24 18:38:44 +00:00
Nathan Hjelm
d59034e6ef MCA: remove deprecated mca_base_param functions (mca_base_param_register_int, mca_base_param_register_string, mca_base_param_environ_variable). Remove all uses of deprecated functions.
cmr:v1.7

This commit was SVN r27451.
2012-10-17 20:17:37 +00:00
Abhishek Kulkarni
5c58a1c9c1 Fix C/R support in the trunk.
Among other things, this patch deals with the following issues:
* fix ompi-checkpoint argument parsing
* ompi-restart -showme prints an extraneous "Restarted child with PID" 
  message. Move around the debug statement to avoid this.
* fixes for the state machine changes

This commit was SVN r26770.
2012-07-09 23:34:13 +00:00
Jeff Squyres
97b3603036 A bunch of fixes and improvements to Open MPI's various command line tools.
* fixed some bugs where "unknown" tokens were allowed on the command
   line (which should really only be used for ortertun).
 * if an unknown token is encountered, print a short error to stderr
   and quit with a nonzero exit status
 * if we don't find the right number of parameters to an option, print
   a short error to stderr and quit with a nonzero exit status
 * when --help is given, print the help message to stdout (not stderr)
   and quit with a zero exit status
 * added --showme:help option to the wrapper compilers
 * updated docs in opal/util/cmd_line.h
 * other small/miscellaneous CLI parsing bugs in various tools

I won't bore you with what we did before.  :-)  Here's some examples
of what the new behavior looks like:

{{{
% ompi_info --bogus
ompi_info: Error: unknown option "--bogus"
Type 'ompi_info --help' for usage.
% ompi_info --param bogus
ompi_info: Error: option "--param" did not have enough parameters (2)
Type 'ompi_info --help' for usage.
%
}}}

This commit was SVN r26072.
2012-02-29 17:52:38 +00:00
Shiqing Fan
3af7c9f7bb Complete the MinGW build support on Windows.
This commit was SVN r25048.
2011-08-15 09:47:23 +00:00
Josh Hursey
6539a31b23 Cleanup configure checks for C/R functionality.
Add a WANT_FT_CR flag different from WANT_FT so tools like *-checkpoint are not built when a different FT technique is requested.

Also fix the C/R thread check so that it is only enabled if C/R is enabled, not generally when threads are enabled.

This commit was SVN r24769.
2011-06-09 19:45:29 +00:00
Shiqing Fan
f43862420c Convert the bad dos line endings to unix style for all windows related files.
This commit was SVN r24137.
2010-12-02 12:08:08 +00:00
Shiqing Fan
358b4a5cba Add an option to enable the debug postfix for executables.
This commit was SVN r24070.
2010-11-19 15:54:13 +00:00
Josh Hursey
e12ca48cd9 A number of C/R enhancements per RFC below:
http://www.open-mpi.org/community/lists/devel/2010/07/8240.php

Documentation:
  http://osl.iu.edu/research/ft/

Major Changes: 
-------------- 
 * Added C/R-enabled Debugging support. 
   Enabled with the --enable-crdebug flag. See the following website for more information: 
   http://osl.iu.edu/research/ft/crdebug/ 
 * Added Stable Storage (SStore) framework for checkpoint storage 
   * 'central' component does a direct to central storage save 
   * 'stage' component stages checkpoints to central storage while the application continues execution. 
     * 'stage' supports offline compression of checkpoints before moving (sstore_stage_compress) 
     * 'stage' supports local caching of checkpoints to improve automatic recovery (sstore_stage_caching) 
 * Added Compression (compress) framework to support 
 * Add two new ErrMgr recovery policies 
   * {{{crmig}}} C/R Process Migration 
   * {{{autor}}} C/R Automatic Recovery 
 * Added the {{{ompi-migrate}}} command line tool to support the {{{crmig}}} ErrMgr component 
 * Added CR MPI Ext functions (enable them with {{{--enable-mpi-ext=cr}}} configure option) 
   * {{{OMPI_CR_Checkpoint}}} (Fixes trac:2342) 
   * {{{OMPI_CR_Restart}}} 
   * {{{OMPI_CR_Migrate}}} (may need some more work for mapping rules) 
   * {{{OMPI_CR_INC_register_callback}}} (Fixes trac:2192) 
   * {{{OMPI_CR_Quiesce_start}}} 
   * {{{OMPI_CR_Quiesce_checkpoint}}} 
   * {{{OMPI_CR_Quiesce_end}}} 
   * {{{OMPI_CR_self_register_checkpoint_callback}}} 
   * {{{OMPI_CR_self_register_restart_callback}}} 
   * {{{OMPI_CR_self_register_continue_callback}}} 
 * The ErrMgr predicted_fault() interface has been changed to take an opal_list_t of ErrMgr defined types. This will allow us to better support a wider range of fault prediction services in the future. 
 * Add a progress meter to: 
   * FileM rsh (filem_rsh_process_meter) 
   * SnapC full (snapc_full_progress_meter) 
   * SStore stage (sstore_stage_progress_meter) 
 * Added 2 new command line options to ompi-restart 
   * --showme : Display the full command line that would have been exec'ed. 
   * --mpirun_opts : Command line options to pass directly to mpirun. (Fixes trac:2413) 
 * Deprecated some MCA params: 
   * crs_base_snapshot_dir deprecated, use sstore_stage_local_snapshot_dir 
   * snapc_base_global_snapshot_dir deprecated, use sstore_base_global_snapshot_dir 
   * snapc_base_global_shared deprecated, use sstore_stage_global_is_shared 
   * snapc_base_store_in_place deprecated, replaced with different components of SStore 
   * snapc_base_global_snapshot_ref deprecated, use sstore_base_global_snapshot_ref 
   * snapc_base_establish_global_snapshot_dir deprecated, never well supported 
   * snapc_full_skip_filem deprecated, use sstore_stage_skip_filem 

Minor Changes: 
-------------- 
 * Fixes trac:1924 : {{{ompi-restart}}} now recognizes path prefixed checkpoint handles and does the right thing. 
 * Fixes trac:2097 : {{{ompi-info}}} should now report all available CRS components 
 * Fixes trac:2161 : Manual checkpoint movement. A user can 'mv' a checkpoint directory from the original location to another and still restart from it. 
 * Fixes trac:2208 : Honor various TMPDIR varaibles instead of forcing {{{/tmp}}} 
 * Move {{{ompi_cr_continue_like_restart}}} to {{{orte_cr_continue_like_restart}}} to be more flexible in where this should be set. 
 * opal_crs_base_metadata_write* functions have been moved to SStore to support a wider range of metadata handling functionality. 
 * Cleanup the CRS framework and components to work with the SStore framework. 
 * Cleanup the SnapC framework and components to work with the SStore framework (cleans up these code paths considerably). 
 * Add 'quiesce' hook to CRCP for a future enhancement. 
 * We now require a BLCR version that supports {{{cr_request_file()}}} or {{{cr_request_checkpoint()}}} in order to make the code more maintainable. Note that {{{cr_request_file}}} has been deprecated since 0.7.0, so we prefer to use {{{cr_request_checkpoint()}}}. 
 * Add optional application level INC callbacks (registered through the CR MPI Ext interface). 
 * Increase the {{{opal_cr_thread_sleep_wait}}} parameter to 1000 microseconds to make the C/R thread less aggressive. 
 * {{{opal-restart}}} now looks for cache directories before falling back on stable storage when asked. 
 * {{{opal-restart}}} also support local decompression before restarting 
 * {{{orte-checkpoint}}} now uses the SStore framework to work with the metadata 
 * {{{orte-restart}}} now uses the SStore framework to work with the metadata 
 * Remove the {{{orte-restart}}} preload option. This was removed since the user only needs to select the 'stage' component in order to support this functionality. 
 * Since the '-am' parameter is saved in the metadata, {{{ompi-restart}}} no longer hard codes {{{-am ft-enable-cr}}}. 
 * Fix {{{hnp}}} ErrMgr so that if a previous component in the stack has 'fixed' the problem, then it should be skipped. 
 * Make sure to decrement the number of 'num_local_procs' in the orted when one goes away. 
 * odls now checks the SStore framework to see if it needs to load any checkpoint files before launching (to support 'stage'). This separates the SStore logic from the --preload-[binary|files] options. 
 * Add unique IDs to the named pipes established between the orted and the app in SnapC. This is to better support migration and automatic recovery activities. 
 * Improve the checks for 'already checkpointing' error path. 
 * A a recovery output timer, to show how long it takes to restart a job 
 * Do a better job of cleaning up the old session directory on restart. 
 * Add a local module to the autor and crmig ErrMgr components. These small modules prevent the 'orted' component from attempting a local recovery (Which does not work for MPI apps at the moment) 
 * Add a fix for bounding the checkpointable region between MPI_Init and MPI_Finalize. 

This commit was SVN r23587.

The following Trac tickets were found above:
  Ticket 1924 --> https://svn.open-mpi.org/trac/ompi/ticket/1924
  Ticket 2097 --> https://svn.open-mpi.org/trac/ompi/ticket/2097
  Ticket 2161 --> https://svn.open-mpi.org/trac/ompi/ticket/2161
  Ticket 2192 --> https://svn.open-mpi.org/trac/ompi/ticket/2192
  Ticket 2208 --> https://svn.open-mpi.org/trac/ompi/ticket/2208
  Ticket 2342 --> https://svn.open-mpi.org/trac/ompi/ticket/2342
  Ticket 2413 --> https://svn.open-mpi.org/trac/ompi/ticket/2413
2010-08-10 20:51:11 +00:00
Jeff Squyres
64cb8f5d7f Another round of man page cleanups from Debian mantainer Manuel
Prinz.  Many thanks!

This commit was SVN r23445.
2010-07-20 14:07:18 +00:00
Shiqing Fan
d1e66bdd01 Use variables instead of hard-coded compiler flags, in order to support various C/C++ compilers on Windows.
This commit was SVN r23016.
2010-04-21 12:45:00 +00:00
Josh Hursey
e9b5162d79 Fix the configure logic for --with-ft so that it properly takes a comma separated list.
Many of the OPAL_ENABLE_FT should be OPAL_ENABLE_FT_CR, so fix those.

The OPAL Layer INC should call opal_output on restart so that it can refresh the string it prints to reflect the current pid/hostname which may have changed.

This commit was SVN r22824.
2010-03-12 23:57:50 +00:00
Josh Hursey
ec4498c258 update copyright
This commit was SVN r22605.
2010-02-11 14:03:36 +00:00
Josh Hursey
4513440df9 The ordering of the appfile matters. The ranks must be in increasing rank
order, so that they get assigned the same ORTE name on restart.

cmr:v1.4.2
cmr:v1.5

This commit was SVN r22586.
2010-02-09 00:31:24 +00:00
Shiqing Fan
ad763c327d Restore several linked libraries that were deleted by mistake in r22405.
This commit was SVN r22415.

The following SVN revision numbers were found above:
  r22405 --> open-mpi/ompi@872a4047ba
2010-01-14 21:50:42 +00:00
Shiqing Fan
872a4047ba Fix the bug that caused by ADD_DEPENDENCIES() from different version of CMake.
In CMake 2.6 and earlier, this function add dependencies for targets and also link the target libraries automatically, but in CMake 2.8,this behavior has been changed, i.e. it will only add the dependencies but no link, which will cause linking errors at compilation time.

This commit was SVN r22405.
2010-01-14 18:10:20 +00:00
Jeff Squyres
16b100219d A patch from UTK to allow orte_init(), opal_init(), and associated
friends also receive &argc and &argv (George asked Jeff to Ralph to
review before committing).  The thought is that passing argv and argc
to opal/orte_init be useful to other projects outside of OMPI that are
using OPAL and/or ORTE (especially in conjunction with some other
bootstrapping code where it is helpful to modify argv).  It's such a
small thing that it's easy to apply here to make others' lives a
little easier.

Ask George for more details; I'm just the messenger.  :-)

Judging by the copyrights on this patch, it's been around for a
while.  :-)

This commit was SVN r22260.
2009-12-04 00:51:15 +00:00
Josh Hursey
d920a302f3 Some more C/R related commits that have been sitting off-trunk for a while.
* Pass the sequence number of the checkpoint along with reference from the global to the local coordinator.
 * 'orte-restart --apponly' now just generates the app context file, and does not run with it. This provides the user the ability to edit the file before launching. 
 * Add a OPAL_CRS_NONE state
 * Split the INC into three distinct parts.
 * Implement a restart mechanism for the 'none' component. If given a context it simply execvp()'s it.

This commit was SVN r21195.
2009-05-08 20:51:13 +00:00
Josh Hursey
5d0607395d A couple of C/R related commits that have been sitting off-trunk for a while.
* Add 'orte-checkpoint -l' option that lists all checkpoints currently available on the system.
 * Add 'orte-restart -i' which prints information regarding the checkpoint targeted for restart.
 * Add ability to extract the timing metadata.
 * Fix show_help() in the orte-checkpoint and orte-restart tools. They should be using the opal versions instead of the orte versions (otherwise nothing is printed).

This commit was SVN r21194.
2009-05-08 19:41:11 +00:00
Shiqing Fan
537b8cd8b1 Get rid of improper use of SET_SOURCE_FILES_PROPERTIES. When using the latest CMake (2.6 patch 4), we get many errors, which didn't show in previous version.
This commit was SVN r21188.
2009-05-07 17:41:05 +00:00
Ralph Castain
4be24521aa Modify the orte_process_info structure to handle a broader range of process types by replacing the individual booleans with a 32-bit bitmap. Use a set of #define's to define the individual bits, and a set of matching macros to test for them. Update the orte code base to use the macros instead of the booleans.
Minor mod to the ompi layer to use the new #define's - just one-line name replacements.

This commit was SVN r21144.
2009-05-04 11:07:40 +00:00
Josh Hursey
0deb009225 A bunch of improvements focused on Snapshot Coordination (SnapC) and File Management (FileM).
* Improved timing in SnapC Full Global Coordinator
 * Improved scalability of the SnapC Full protocol
 * Minor improvements to the error reporting mechanisms in SnapC and FileM
 * Improved the memory usage of the metadata routines - now the owner of the data is more explicit.
 * Added a FileM hint to indicate when files stored locally can be moved to/from a globally mounted file system using just the 'cp' command instead of the 'rcp/scp' command. Slightly improves performance, but not too drastically. Can be set using the following SnapC MCA parameter: {{{snapc_base_global_shared=1}}}
 * Implement the ability to throttle the number of outgoing connections in FileM. At larger scales this type of explicit throttling helps prevent overwhelming the HNP machine. Default: 10, set via MCA parameter: {{{filem_rsh_max_outgoing}}}
 * Add a few diagnostic/debugging features to SnapC and FileM.

This commit was SVN r21131.
2009-04-30 16:55:39 +00:00
Rainer Keller
221fb9dbca ... Delayed due to notifier commits earlier this day ...
- Delete unnecessary header files using
   contrib/check_unnecessary_headers.sh after applying
   patches, that include headers, being "lost" due to
   inclusion in one of the now deleted headers...

   In total 817 files are touched.
   In ompi/mpi/c/ header files are moved up into the actual c-file,
   where necessary (these are the only additional #include),
   otherwise it is only deletions of #include (apart from the above
   additions required due to notifier...)

 - To get different MCAs (OpenIB, TM, ALPS), an earlier version was
   successfully compiled (yesterday) on:
   Linux locally using intel-11, gcc-4.3.2 and gcc-SVN + warnings enabled
   Smoky cluster (x86-64 running Linux) using PGI-8.0.2 + warnings enabled
   Lens cluster (x86-64 running Linux) using Pathscale-3.2 + warnings enabled

This commit was SVN r21096.
2009-04-29 01:32:14 +00:00
Shiqing Fan
3d4e0472d6 Add windows support files into the tarball, including .windows, CMakeLists.txt files, and CMake modules. Thanks to Jeff for testing it on Linux.
This commit was SVN r21069.
2009-04-24 16:39:33 +00:00
Shiqing Fan
2326f14be5 Remove the unnecessary PROJECT command, I somehow misunderstood how it should be used on Windows....
This commit was SVN r20634.
2009-02-25 16:07:43 +00:00
Rainer Keller
d81443cc5a - On the way to get the BTLs split out and lessen dependency on orte:
Often, orte/util/show_help.h is included, although no functionality
   is required -- instead, most often opal_output.h, or               
   orte/mca/rml/rml_types.h                                           
   Please see orte_show_help_replacement.sh commited next.            

 - Local compilation (Linux/x86_64) w/ -Wimplicit-function-declaration
   actually showed two *missing* #include "orte/util/show_help.h"     
   in orte/mca/odls/base/odls_base_default_fns.c and                  
   in orte/tools/orte-top/orte-top.c                                  
   Manually added these.                                              

   Let's have MTT the last word.

This commit was SVN r20557.
2009-02-14 02:26:12 +00:00
Josh Hursey
abfc7c6076 Per ticket #1527 orte-restart should be using {{{--default-hostfile}}} instead of {{{--hostfile}}} with app contexts.
Thanks to Gregor Dschung for reporting the problem.

This commit was SVN r20305.
2009-01-21 14:08:16 +00:00
Ralph Castain
7787f84540 Per the earlier RFC and some discussion at the Dec ORTE design meeting, add the ompi-top tool and all its supporting infrastructure. This includes a new OPAL pstat framework and data type, currently with rather weak support for Mac OSX and pretty complete support for Linux. The Sun team promised to add Solaris support as well.
Also, per chat with Jeff, modified the Makefile.am's of a few orte tools so that they were consistent in the way we generate the ompi-equivalent cmds.

This commit was SVN r20165.
2008-12-22 20:23:05 +00:00
Shiqing Fan
a5281f0434 - 1/4 commit for Windows Visual Studio and CCP support:
CMakeLists and .windows files.
  In contribs preconfigured and precompiled parts.

This commit was SVN r20108.
2008-12-10 20:59:20 +00:00
Jeff Squyres
797ec531aa Some more work on the man pages:
* Make the creation of the build dir for the man pages a bit more
   robust (thanks to suggestions from Ralf W.).
 * Only distribute the .Xin files, not the .X man pages themselves.
 * Make the .X files depend on opal_config.h so that if you re-run
   configure and change opal_config.h (e.g., a new version), the man
   pages should get rebuilt.
 * Man pages are now cleaned with "distclean", not "maintainer-clean".
 * Fix a typo in opal_crs.7in.
 * Udpate make_dist_tarball to update "date" in the VERSION file.
 * Make make_dist_tarball a bit friendlier to hg checkouts.

This commit was SVN r19219.
2008-08-07 19:20:40 +00:00
Jeff Squyres
b83ee7d82a * Fix a problem with VPATH builds if the destination directory didn't
already exist  
 * s/top_srcdir/top_builddir/ in a bunch of places; left over from the
   previous man page generation system

This commit was SVN r19141.
2008-08-04 15:17:50 +00:00
Dan Lacher
9175da1e02 Putback for all changes to automate man page updates to strings of
versions, dates and build names.

Fixes trac:1387

Big thanks to Jeff and Brian for help and oversight.

This commit was SVN r19120.

The following Trac tickets were found above:
  Ticket 1387 --> https://svn.open-mpi.org/trac/ompi/ticket/1387
2008-08-01 21:14:37 +00:00
Jeff Squyres
24c3aa1d77 Really fix "make dist". Really.
This commit was SVN r18704.
2008-06-21 18:04:38 +00:00
Jeff Squyres
930667ac73 Ensure that orte-checkpoint and orte-restart man pages are always
included in the distribution tarball.  This ''appears'' to be an
Automake bug -- I have submitted a bug report to the bug-automake list:

http://lists.gnu.org/archive/html/bug-automake/2008-06/msg00019.html

This commit was SVN r18696.
2008-06-20 18:19:01 +00:00
Jeff Squyres
e4172a3c44 Shift the AM "if" logic down from orte/tools/Makefile.am down to the
individual orte/tools/*/Makefile.am files.  This causes "make" to
travese into every directory, even if it's not going to build anything
in that directory (which is a good thing).  It also helps cleanup and
dist issues.

This also affects orte-checkpoint and orte-restart, but I couldn't get
--with-ft to compile properly; I'll pass along a heads-up to Josh to
ensure that I didn't break anything.

This commit was SVN r18680.
2008-06-19 14:46:10 +00:00
Ralph Castain
9613b3176c Effectively revert the orte_output system and return to direct use of opal_output at all levels. Retain the orte_show_help subsystem to allow aggregation of show_help messages at the HNP.
After much work by Jeff and myself, and quite a lot of discussion, it has become clear that we simply cannot resolve the infinite loops caused by RML-involved subsystems calling orte_output. The original rationale for the change to orte_output has also been reduced by shifting the output of XML-formatted vs human readable messages to an alternative approach.

I have globally replaced the orte_output/ORTE_OUTPUT calls in the code base, as well as the corresponding .h file name. I have test compiled and run this on the various environments within my reach, so hopefully this will prove minimally disruptive.

This commit was SVN r18619.
2008-06-09 14:53:58 +00:00
Josh Hursey
78f14b5255 Fix the none.checkpoint command.
orte-checkpoint/orte-restart seem to not seem to totally like orte_output so revert them to opal_output for now. Since we have no need for the additional complexity of orte_output we can drop it for now and revisit this if anyone needs it later.

It seems that if you set the verbose level on an output handle then try to call a normal orte_output() on it then the message will *not* be printed. This is the same for opal_output, and seems incorrect to me because it stops some error messages from being printed out if you do not directly specify opal_output(0, ...). Maybe someone should take a look a this.


orte-checkpoint would segv if passed an incorrect PID. Fixed the return code so it errors out properly.

Thanks to Eric Roman for bringing this to my attention.

This commit was SVN r18583.
2008-06-04 14:44:11 +00:00
Ralph Castain
c992e99035 Remove the tags from orte_output_open and the filtering operation from orte_output - this will be handled differently to improve the XML output interface
This commit was SVN r18557.
2008-06-03 14:24:01 +00:00
Jeff Squyres
e7ecd56bd2 This commit represents a bunch of work on a Mercurial side branch. As
such, the commit message back to the master SVN repository is fairly
long.

= ORTE Job-Level Output Messages =

Add two new interfaces that should be used for all new code throughout
the ORTE and OMPI layers (we already make the search-and-replace on
the existing ORTE / OMPI layers):

 * orte_output(): (and corresponding friends ORTE_OUTPUT,
   orte_output_verbose, etc.)  This function sends the output directly
   to the HNP for processing as part of a job-specific output
   channel.  It supports all the same outputs as opal_output()
   (syslog, file, stdout, stderr), but for stdout/stderr, the output
   is sent to the HNP for processing and output.  More on this below.
 * orte_show_help(): This function is a drop-in-replacement for
   opal_show_help(), with two differences in functionality:
   1. the rendered text help message output is sent to the HNP for
      display (rather than outputting directly into the process' stderr
      stream)
   1. the HNP detects duplicate help messages and does not display them
      (so that you don't see the same error message N times, once from
      each of your N MPI processes); instead, it counts "new" instances
      of the help message and displays a message every ~5 seconds when
      there are new ones ("I got X new copies of the help message...")

opal_show_help and opal_output still exist, but they only output in
the current process.  The intent for the new orte_* functions is that
they can apply job-level intelligence to the output.  As such, we
recommend that all new ORTE and OMPI code use the new orte_*
functions, not thei opal_* functions.

=== New code ===

For ORTE and OMPI programmers, here's what you need to do differently
in new code:

 * Do not include opal/util/show_help.h or opal/util/output.h.
   Instead, include orte/util/output.h (this one header file has
   declarations for both the orte_output() series of functions and
   orte_show_help()).
 * Effectively s/opal_output/orte_output/gi throughout your code.
   Note that orte_output_open() takes a slightly different argument
   list (as a way to pass data to the filtering stream -- see below),
   so you if explicitly call opal_output_open(), you'll need to
   slightly adapt to the new signature of orte_output_open().
 * Literally s/opal_show_help/orte_show_help/.  The function signature
   is identical.

=== Notes ===

 * orte_output'ing to stream 0 will do similar to what
   opal_output'ing did, so leaving a hard-coded "0" as the first
   argument is safe.
 * For systems that do not use ORTE's RML or the HNP, the effect of
   orte_output_* and orte_show_help will be identical to their opal
   counterparts (the additional information passed to
   orte_output_open() will be lost!).  Indeed, the orte_* functions
   simply become trivial wrappers to their opal_* counterparts.  Note
   that we have not tested this; the code is simple but it is quite
   possible that we mucked something up.

= Filter Framework =

Messages sent view the new orte_* functions described above and
messages output via the IOF on the HNP will now optionally be passed
through a new "filter" framework before being output to
stdout/stderr.  The "filter" OPAL MCA framework is intended to allow
preprocessing to messages before they are sent to their final
destinations.  The first component that was written in the filter
framework was to create an XML stream, segregating all the messages
into different XML tags, etc.  This will allow 3rd party tools to read
the stdout/stderr from the HNP and be able to know exactly what each
text message is (e.g., a help message, another OMPI infrastructure
message, stdout from the user process, stderr from the user process,
etc.).

Filtering is not active by default.  Filter components must be
specifically requested, such as:

{{{
$ mpirun --mca filter xml ...
}}}

There can only be one filter component active.

= New MCA Parameters =

The new functionality described above introduces two new MCA
parameters:

 * '''orte_base_help_aggregate''': Defaults to 1 (true), meaning that
   help messages will be aggregated, as described above.  If set to 0,
   all help messages will be displayed, even if they are duplicates
   (i.e., the original behavior).
 * '''orte_base_show_output_recursions''': An MCA parameter to help
   debug one of the known issues, described below.  It is likely that
   this MCA parameter will disappear before v1.3 final.

= Known Issues =

 * The XML filter component is not complete.  The current output from
   this component is preliminary and not real XML.  A bit more work
   needs to be done to configure.m4 search for an appropriate XML
   library/link it in/use it at run time.
 * There are possible recursion loops in the orte_output() and
   orte_show_help() functions -- e.g., if RML send calls orte_output()
   or orte_show_help().  We have some ideas how to fix these, but
   figured that it was ok to commit before feature freeze with known
   issues.  The code currently contains sub-optimal workarounds so
   that this will not be a problem, but it would be good to actually
   solve the problem rather than have hackish workarounds before v1.3 final.

This commit was SVN r18434.
2008-05-13 20:00:55 +00:00
Josh Hursey
cc83d41ad9 Merge in tmp/jjh-scratch
{{{
 svn merge -r 18218:18240 https://svn.open-mpi.org/svn/ompi/tmp/jjh-scratch .
}}}

Contains:
 * Primarily a fix for a user reported problem where a cached file descriptor is causing a SIGPIPE on restart.
 * Cleanup some small memory leaks from using mca_base_param_env_var() - Thanks Jeff
 * Cleanup ORTE FT tool compilation in non-FT builds - Thanks Tim P.
 * Cleanup mpi interface with missplaced {{{OPAL_CR_ENTER_LIBRARY}}} - Thanks Terry
 * Some other sundry cleanup items all dealing with C/R functionality in the trunk.

This commit was SVN r18241.
2008-04-23 00:17:12 +00:00
Josh Hursey
56a61bfacf switch the name of orterun to mpirun to make things more clear.
This commit was SVN r18208.
2008-04-18 12:59:23 +00:00
Jeff Squyres
dee561d29e Per recent off-list discussions about the build system, I have done
some cleanups and standardizations in the various */tools/*/ 
Makefile.am files.  This commit:

 * Somewhat simplify the tool Makefile.am's 
 * Makes the tool Makefile.am's consistent with each other (do similar
   actions in similar ways)
 * Update the tool Makefile.am's to remove old kruft that was required
   by older versions of AM (trunk requires AM >=1.10)

This commit was SVN r17921.
2008-03-22 02:04:05 +00:00
Ralph Castain
d70e2e8c2b Merge the ORTE devel branch into the main trunk. Details of what this means will be circulated separately.
Remains to be tested to ensure everything came over cleanly, so please continue to withhold commits a little longer

This commit was SVN r17632.
2008-02-28 01:57:57 +00:00
Ralph Castain
54b2cf747e These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.

This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:

As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.

In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.

The incoming changes revamp these procedures in three ways:

1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.

The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.

Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.


2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.

The size of this data has been reduced in three ways:

(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.

To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.

(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.

(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.

While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.


3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.

It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.

Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.


There are a few minor additional changes in the commit that I'll just note in passing:

* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.

* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.

* cleanup of some stale header files

This commit was SVN r16364.
2007-10-05 19:48:23 +00:00