1
1
Граф коммитов

361 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
3c914a7a97 Complete the fix of the ORTE DVM. We will now use "prun" instead of "orterun -hnp foo" to execute jobs. This provides the feature of automatic discovery of the orte-dvm so you don't need to manually enter URI's or contact file locations. All IO is forwarded to prun.
Still in the "needs to be done" category:

* mapping/ranking/binding options aren't correctly supported

* if the DVM encounters some errors (e.g., not enough resources for the job), the resulting error is globally set and impacts any subsequent job submission

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-09-16 13:13:07 -07:00
Nathan Hjelm
76320a8ba5 opal: rename opal_atomic_init to opal_atomic_lock_init
This function is used to initalize and opal atomic lock. The old name
was confusing.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-08-07 14:15:11 -06:00
Mark Allen
552216f9ba scripted symbol name change (ompi_ prefix)
Passed the below set of symbols into a script that added ompi_ to them all.

Note that if processing a symbol named "foo" the script turns
    foo  into  ompi_foo
but doesn't turn
    foobar  into  ompi_foobar

But beyond that the script is blind to C syntax, so it hits strings and
comments etc as well as vars/functions.

    coll_base_comm_get_reqs
    comm_allgather_pml
    comm_allreduce_pml
    comm_bcast_pml
    fcoll_base_coll_allgather_array
    fcoll_base_coll_allgatherv_array
    fcoll_base_coll_bcast_array
    fcoll_base_coll_gather_array
    fcoll_base_coll_gatherv_array
    fcoll_base_coll_scatterv_array
    fcoll_base_sort_iovec
    mpit_big_lock
    mpit_init_count
    mpit_lock
    mpit_unlock
    netpatterns_base_err
    netpatterns_base_verbose
    netpatterns_cleanup_narray_knomial_tree
    netpatterns_cleanup_recursive_doubling_tree_node
    netpatterns_cleanup_recursive_knomial_allgather_tree_node
    netpatterns_cleanup_recursive_knomial_tree_node
    netpatterns_init
    netpatterns_register_mca_params
    netpatterns_setup_multinomial_tree
    netpatterns_setup_narray_knomial_tree
    netpatterns_setup_narray_tree
    netpatterns_setup_narray_tree_contigous_ranks
    netpatterns_setup_recursive_doubling_n_tree_node
    netpatterns_setup_recursive_doubling_tree_node
    netpatterns_setup_recursive_knomial_allgather_tree_node
    netpatterns_setup_recursive_knomial_tree_node
    pml_v_output_close
    pml_v_output_open
    intercept_extra_state_t
    odls_base_default_wait_local_proc
    _event_debug_mode_on
    _evthread_cond_fns
    _evthread_id_fn
    _evthread_lock_debugging_enabled
    _evthread_lock_fns
    cmd_line_option_t
    cmd_line_param_t
    crs_base_self_checkpoint_fn
    crs_base_self_continue_fn
    crs_base_self_restart_fn
    event_enable_debug_output
    event_global_current_base_
    event_module_include
    eventops
    sync_wait_mt
    trigger_user_inc_callback
    var_type_names
    var_type_sizes

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-07-11 02:13:23 -04:00
Ralph Castain
acd60a2cc4 Add missing constant to error-strings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 16:10:52 -07:00
Ralph Castain
594c0e2876 Retain the max terminal length of 78 characters, replace the word "disabled" with a simple "-" and hope people know what that means
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-05 07:10:05 -07:00
Ralph Castain
e25a051f41 Change the default sizes for opal_info output
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-04 20:30:53 -07:00
Jeff Squyres
23325c31d3 Merge pull request #3338 from jjhursey/topic/ompi_info_show_failed
`ompi_info --show-failed` feature
2017-05-16 17:08:43 -04:00
Ralph Castain
c86f71376a Increase fine grain of timing info
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-20 00:17:40 -07:00
Joshua Hursey
742d452c62 opal_info: Add --show-failed CLI option
* `ompi_info --show-failed` will include the failed components along
   with information about why they failed.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-04-12 16:06:40 -05:00
Joshua Hursey
3ad3d4e3e7 opal_info: Add ability to report load failures
* Add a path for failed component load information to be reported up.
 * This allows ompi_info to display this information inline to make it
   easier for folks to see if the component is present but failed for
   some reason. Most likely a missing library, but could be a libnl
   conflict.
 * Add MCA parameter to enable this feature:
   - `mca_base_component_track_load_errors` takes a boolean
   - Default: `false`

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-04-12 16:06:21 -05:00
Artem Polyakov
88ed79ea25 opal/timing: remove old framework
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:22 +06:00
Ralph Castain
d645557fa0 Update to include the PMIx 2.0 APIs for monitoring and job control. Include required integration, but leave the monitors off for now. Move the sensor framework out of ORTE as it is being absorbed into PMIx
Fix typo and silence warnings

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-21 17:47:08 -07:00
Ralph Castain
83199979ba Remove the stale opal/sec framework
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-02 15:41:56 -08:00
Nathan Hjelm
8562b87ad3 Merge pull request #2967 from hjelmn/auto_bool
mca/base: add new base enumerator (auto_bool)
2017-02-14 12:25:56 -07:00
Nathan Hjelm
9e692ce264 mca/base: add new base enumerator (auto_bool)
This commit adds a new base enumerator type for variables that take of
the values -1, 0, and 1. These values are mapped to the strings auto,
false, true. This commit updates the mpi_leave_pinned MCA variable to
use the new enumerator.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 10:21:45 -07:00
Carlos Bederián
4009ba6b94 opal_progress: use usec native timer only when a native cycle counter isn't available
Signed-off-by: Carlos Bederián <bc@famaf.unc.edu.ar>
2017-02-04 18:31:14 -03:00
Joshua Hursey
6d98559be9 stacktrace: Add flexibility in stacktrace ouptut
- New MCA option: opal_stacktrace_output
   - Specifies where the stack trace output stream goes.
   - Accepts: none, stdout, stderr, file[:filename]
   - Default filename 'stacktrace'
     - Filename will be `stacktrace.PID`, or if VPID is available,
       then the filename will be `stacktrace.VPID.PID`
 - Update util/stacktrace to allow for different output avenues
   including files. Previously this was hardcoded to 'stderr'.
 - Since opal_backtrace_print needs to be signal safe, passing it a
   FILE object that actually represents a file stream is difficult. This
   is because we cannot open the file in the signal handler using
   `fopen` (not safe), but have to use `open` (safe). Additionally, we
   cannot use `fdopen` to convert the `int fd` to a `FILE *fh` since it
   is also not signal safe.
   - I did not want to break the backtrace.h API so I introduced a new
     rule (documented in `backtrace.c`) that if the `FILE *file`
     argument is `NULL` then look for the `opal_stacktrace_output_fileno`
     variable to tell you which file descriptor to use for output.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-26 11:55:32 -06:00
Gilles Gouaillardet
b3a2bdda7b opal/threads: manually invoke thread-specific key destructors on the main thread.
there is no such thing as pthread_join(main_thread), so key destructors
are never invoked on the main thread, which causes valgrind report
some memory leaks. Manually store and then invoke the key destructors and
make valgrind happy.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 13:46:35 +09:00
Gilles Gouaillardet
c9aeccb84e opal/if: open the if framework once in opal_init_util
the if framework is no more open in opal_if*, which plugs
several memory leaks

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
2739346a18 opal: invoke mca_base_close() in opal_finalize_util()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-01 14:24:29 +09:00
Ralph Castain
1e2019ce2a Revert "Update to sync with OMPI master and cleanup to build"
This reverts commit cb55c88a8b.
2016-11-22 15:03:20 -08:00
Ralph Castain
cb55c88a8b Update to sync with OMPI master and cleanup to build
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-11-22 14:24:54 -08:00
Gilles Gouaillardet
8cc3f288c9 opal: fix opal_class_finalize() usage
the class system can be initialized/finalized as many times as we like,
so there is no more need to have opal_class_finalize() invoked in a destructor

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-10-26 15:15:54 +09:00
Ralph Castain
649301a3a2 Revise the routed framework to be multi-select so it can support the new conduit system. Update all calls to rml.send* to the new syntax. Define an orte_mgmt_conduit for admin and IOF messages, and an orte_coll_conduit for all collective operations (e.g., xcast, modex, and barrier).
Still not completely done as we need a better way of tracking the routed module being used down in the OOB - e.g., when a peer drops connection, we want to remove that route from all conduits that (a) use the OOB and (b) are routed, but we don't want to remove it from an OFI conduit.
2016-10-23 21:52:39 -07:00
Gilles Gouaillardet
0d24fad307 opal: always run opal_class_finalize in the opal_cleanup destructor
if MPI_Init[_thread]/MPI_Finalize and MPI_T_init_thread/MPI_T_finalize
are balanced, opal_initialized is zero, and hence opal_cleanup destructor
never invokes opal_class_finalize.
if MPI_Init[_thread] nor MPI_T_init_thread have been called, classes is NULL,
so opal_class_finalize does nothing
2016-10-08 16:58:20 +09:00
Ralph Castain
0ea1cff733 Implement notification of completion on comm_spawn'd child jobs. Add a configure flag to enable PMIx 3's shared memory datastore, and set it disable by default so that comm_spawn functions again. Will reverse the default once that feature is fully functional 2016-09-01 13:10:10 -07:00
Ralph Castain
20a91c2baf Add a new --continuous flag to mpirun that directs ORTE to let a job continue running as app procs terminate. Don't attempt to restart them. Add event notification of abnormally terminating procs, and demonstrate that in the mpi_spin test program.
Cleanup debug message
2016-07-13 15:28:33 -07:00
Ralph Castain
6e434d6785 Add support for PMIx tool connections and queries. Initially only support a request to list all known namespaces (jobids) from ORTE, but other folks will extend that support to include additional information
Update to match PMIx RFC

Fix configury to point to correct libevent and hwloc locations
2016-06-29 19:19:19 -07:00
Nathan Hjelm
e4f920f6f9 opal/progress: improve performance when there are no LP callbacks
This commit adds another check to the low-priority callback
conditional that short-circuits the atomic-add if there are no
low-priority callbacks. This should improve performance in the common
case.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-06-22 09:52:37 -06:00
Nathan Hjelm
f59c2fce6b Merge pull request #1786 from hjelmn/32_fix
opal/progress: use 32-bit atomics for call counter
2016-06-17 08:54:41 -06:00
Nathan Hjelm
dbd8369485 opal/progress: use 32-bit atomics for call counter
This commit fixes a compile error on 32-bit platforms. The
low-priority call counter was always using 64-bit atomics which will
not work if 64-bit atomic math is not available. Updated to use 32-bit
instead.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-06-16 09:01:19 -06:00
Ralph Castain
5d330d5220 Enable the PMIx event notification capability and use that for all error notifications, including debugger release. This capability requires use of PMIx 2.0 or above as the features are not available with earlier PMIx releases. When OMPI master is built against an earlier external version, it will fallback to the prior behavior - i.e., debugger will be released via RML and all notifications will go strictly to the default error handler.
Add PMIx 2.0

Remove PMIx 1.1.4

Cleanup copying of component

Add missing file

Touchup a typo in the Makefile.am

Update the pmix ext114 component

Minor cleanups and resync to master

Update to latest PMIx 2.x

Update to the PMIx event notification branch latest changes
2016-06-14 13:08:41 -07:00
Jeff Squyres
5071602c59 PSM/PSM2: Disable signal handler hijacking by default
Per discussion on https://github.com/open-mpi/ompi/pull/1767 (and some
subsequent phone calls and off-issue email discussions), the PSM
library is hijacking signal handlers by default.  Specifically: unless
the environment variables `IPATH_NO_BACKTRACE=1` (for PSM / Intel
TrueScale) is set, the library constructor for this library will
hijack various signal handlers for the purpose of invoking its own
error reporting mechanisms.

This may be a bit *surprising*, but is not a *problem*, per se.  The
real problem is that older versions of at least the PSM library do not
unregister these signal handlers upon being unloaded from memory.
Hence, a segv can actually result in a double segv (i.e., the original
segv and then another segv when the now-non-existent signal handler is
invoked).

This PSM signal hijacking subverts Open MPI's own signal reporting
mechanism, which may be a bit surprising for some users (particularly
those who do not have Intel TrueScale).  As such, we disable it by
default so that Open MPI's own error-reporting mechanisms are used.

Additionally, there is a typo in the library destructor for the PSM2
library that may cause problems in the unloading of its signal
handlers.  This problem can be avoided by setting `HFI_NO_BACKTRACE=1`
(for PSM2 / Intel OmniPath).

This is further compounded by the fact that the PSM / PSM2 libraries
can be loaded by the OFI MTL and the usNIC BTL (because they are
loaded by libfabric), even when there is no Intel networking hardware
present.  Having the PSM/PSM2 libraries behave this way when no Intel
hardware is present is clearly undesirable (and is likely to be fixed
in future releases of the PSM/PSM2 libraries).

This commit sets the following two environment variables to disable
this behavior from the PSM/PSM2 libraries (if they are not already
set):

* IPATH_NO_BACKTRACE=1
* HFI_NO_BACKTRACE=1

If the user has set these variables before invoking Open MPI, we will
not override their values (i.e., their preferences will be honored).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-06-14 11:45:23 -07:00
Nathan Hjelm
e082ed752a opal/progress: fix warnings
This commit fixes several warning introduced by
open-mpi/ompi@fc26d9c69f .

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-06-06 22:18:24 -06:00
Nathan Hjelm
2fad3b9bc6 opal/progress: make progress function registration mt safe
This commit fixes a bug in opal progress registration that can cause
crashes when a progress function is registered while another thread is
in opal_progress(). Before this commit realloc is used to allocate
more space for progress functions but it is possible for a thread in
opal_progress() to try to read from the array that is freed by realloc
before the array is re-assigned when realloc returns. To prevent this
race use malloc + memcpy to fill the new array and atomically swap out
the old and new array pointers.

Per suggestion we now allocate a default of 8 slots for callbacks and
double the current number when we run out of space.

This commit also fixes leaking the callbacks_lp array.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-06-01 20:57:19 -06:00
Ralph Castain
80f4e3b872 Fix the --tune problem by searching the argv for MCA params in advance of opal_init_util. Only search the first app_context as we historically have done - we can debate whether or not to search all app_contexts 2016-05-23 21:09:44 -07:00
Nathan Hjelm
31bfeede82 bml/r2: always add btl progress function
This commit changes the behavior of bml/r2 from conditionally
registering btl progress functions to always registering progress
functions. Any progress function beloning to a btl that is not yet in
use is registered as low-priority. As soon as a proc is added that
will make use of the btl is is re-registered normally.

This works around an issue with some btls. In order to progress a
first message from an unknown peer both ugni and openib need to have
their progress functions called. If either btl is not in use after the
first call to add_procs the callback was never happening. This commit
ensures the btl progress function is called at some point but the
number of progress callbacks is reduced from normal to ensure lower
overhead when a btl is not used. The current ratio is 1 low priority
progress callback for every 8 calls to opal_progress().

Fixes open-mpi/ompi#1676

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-21 15:54:04 -04:00
Ralph Castain
42ecffb6d0 Move the registration of MCA params out of the init of the var system - put them in with the rest of the OPAL MCA param registrations
Take another shot at untangling the spaghetti

orterun: fix for command line parsing

orte-submit calls opal_init_util () before parsing out MCA command line
options (-mca, -am, etc). This prevents mpirun from setting opal MCA
variables for some frameworks as well as the MCA base. This is because
when a framework is opened all of its variables are set to read-only.
Eventually we want to lift this restriction on some MCA variables but
since -mca is affected we must parse out the MCA command line options
before opal_init_util(). This commit fixes the bug by adding a new
option to opal_cmd_line_parse (ignore unknown option) so orte-submit
can pre-parse the command line for MCA options.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>

Minor cleanups to avoid releasing/recreating the cmd line
2016-05-20 09:59:50 -07:00
Ralph Castain
58dd41facf Repair the processing of cmd line options that mapped to MCA params. This was responsible for breaking things like map-by <foo>.
Remove debug, let orterun send terminate cmd to DVM

Recover the DVM support
2016-05-06 13:14:03 -07:00
Nathan Hjelm
41f00b7465 memory/patcher: initialize patcher framework when needed
This commit moves the patcher framework initialization to the
memory/patcher component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-04 12:46:42 -06:00
Jeff Squyres
265e5b9795 Merge pull request #1552 from kmroz/wip-hostname-len-cleanup-1
ompi/opal/orte/oshmem/test: max hostname length cleanup
2016-05-02 09:44:18 -04:00
Ralph Castain
6ac7929bd0 Extend the schizo framework to allow definition of CLI options by environment. Refactor orterun to mesh with the orted_submit code, thus improving code reuse. Eliminate the orte-submit tool as orterun can now meet that need.
Cleanups per @jjhursey review
2016-05-01 11:30:25 -07:00
Karol Mroz
e1c64e6e59 opal: standardize on max hostname length
Define OPAL_MAXHOSTNAMELEN to be either:
  (MAXHOSTNAMELEN + 1) or
  (limits.h:HOST_NAME_MAX + 1) or
  (255 + 1)

For pmix code, define above using PMIX_MAXHOSTNAMELEN.

Fixup opal layer to use the new max.

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-04-24 08:19:47 +02:00
Nathan Hjelm
c2b6fbb124 opal/memory: move initialization to first rcache creation
Because of the removal of the linux memory component it is no longer
necessary to initialize the memory component in opal_init(). This
commit moves the initialization to the creation of the first rcache
component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:21:46 -06:00
Nathan Hjelm
27f8a4e806 opal: add code patcher framework
This commit adds a framework to abstract runtime code patching.
Components in the new framework can provide functions for either
patching a named function or a function pointer. The later
functionality is not being used but may provide a way to allow memory
hooks when dlopen functionality is disabled.

This commit adds two different flavors of code patching. The first is
provided by the overwrite component. This component overwrites the
first several instructions of the target function with code to jump to
the provided hook function. The hook is expected to provide the full
functionality of the hooked function.

The linux patcher component is based on the memory hooks in ucx. It
only works on linux and operates by overwriting function pointers in
the symbol table. In this case the hook is free to call the original
function using the function pointer returned by dlsym.

Both components restore the original functions when the patcher
framework closes.

Changes had to be made to support Power/PowerPC with the Linux
dynamic loader patcher. Some of the changes:

 - Move code necessary for powerpc/power support to the patcher
   base. The code is needed by both the overwrite and linux
   components.

 - Move patch structure down to base and move the patch list to
   mca_patcher_base_module_t. The structure has been modified to
   include a function pointer to the function that will unapply the
   patch. This allows the mixing of multiple different types of
   patches in the patch_list.

 - Update linux patching code to keep track of the matching between
   got entry and original (unpatched) address. This allows us to
   completely clean up the patch on finalize.

All patchers keep track of the changes they made so that they can be
reversed when the patcher framework is closed.

At this time there are bugs in the Linux dynamic loader patcher so
its priority is lower than the overwrite patcher.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:16:13 -06:00
rhc54
f858647779 Merge pull request #1522 from kmroz/wip-ompi-info-params-fix
opal_info_support: fix memory leak and refactor for pvars
2016-04-05 10:02:42 -07:00
Nathan Hjelm
444190093a Merge pull request #1516 from kmroz/wip-ompi-info-cleanup
opal_info_support: fix api comments
2016-04-05 07:31:33 -06:00
Karol Mroz
13979f559f opal_info_support: refactor component output separation
Adding component name to the pvar pretty output as well.

Further, I think keeping the asprintf()/opal_info_out(msg,msg,------)
within the loops is needed to avoid printing any component information
(independently for group_vars and group_pvars) in case the upcoming
parameters are internal and not to be displayed.

Lastly, unnecessarily duplicating the dashed output should not happen as
each invocation of opal_info_show_mca_group_params() passes a new group
structure which we check.

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-04-04 19:49:57 +02:00
Karol Mroz
43254391a8 opal_info_support: fix memory leak
Fixing a memory leak I introduced with a3229c3a1f.

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-04-04 18:11:11 +02:00
rhc54
a548232c6b Merge pull request #1518 from kmroz/wip-ompi-info-param-output-1
opal_info_support: add component to param pretty output
2016-04-03 06:39:00 -07:00