ports/openmpi
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Howard Pritchard
9548b8a9e8 plm/alps: add wlm detect infrastructure 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-12-07 07:43:20 -08:00
Artem Polyakov
f2794740b3 Fix intercommunicator split (was triggered by MPICH/icsend test) 2015-12-07 15:41:29 +02:00
rhc54
04fc4060db Merge pull request #1143 from rhc54/topic/noompi 
Fix "autogen.pl --no-ompi"
 2015-12-07 00:40:16 -08:00
Gilles Gouaillardet
4d2c7f7de1 cuda: fix missing #include opal/util/argv.h 2015-12-07 14:10:32 +09:00
Ralph Castain
e33515c87c Fix "autogen.pl --no-ompi", which was broken due to inclusion of a conditional in the test/monitoring Makefile.am that is only defined if OMPI is built. 
Per suggestion from @bosilca, comment out generation of the shared library

Use the patch from Gilles instead
 2015-12-06 21:10:17 -08:00
Gilles Gouaillardet
bfe8e03d9d fcoll/two_phase: use ompi_mpi_abort instead of PMPI_Abort 
Thanks Jeff for the review
 2015-12-07 11:34:36 +09:00
Gilles Gouaillardet
ef03bc726c ompi: fix comment in ompi/mpi/c/Makefile.am 
Thanks Jeff for the review
 2015-12-07 11:34:01 +09:00
Gilles Gouaillardet
37c978f5e9 coll/libnbc: correctly handle changed types. 
this fixes open-mpi/ompi@d816d1c194
thanks Jeff for the review
 2015-12-07 10:13:43 +09:00
Gilles Gouaillardet
26b2ed1069 fortran: add missing MPI_xxx_DUP_FN bindings in use-mpi-tkr 
- MPI_COMM_DUP_FN
- MPI_TYPE_DUP_FN
- MPI_WIN_DUP_FN
 2015-12-07 09:10:48 +09:00
Howard Pritchard
d7b437ecaa Merge pull request #1157 from gpichot/adds-darwin-headers-for-java 
Adds darwin headers directory for Darwin JDK
 2015-12-06 14:49:53 -07:00
George Bosilca
3a9664ac9d Fix Coverity CIDs 1341584-1341589. 2015-12-06 14:06:36 -05:00
Gabriel Pichot
ff5af73676 Adds usage of /usr/libexec/java_home for OS X platforms 2015-12-05 11:51:51 +01:00
Ralph Castain
10db7ebfab Update the symbol-hiding script to capture a broader range of symbols 2015-12-04 21:05:57 -08:00
rhc54
1568d6b33c Merge pull request #1181 from rhc54/topic/tools 
Provide a mechanism by which a tool can request async progress thread support for ORTE
 2015-12-04 12:24:05 -08:00
Ralph Castain
8823069fe9 Provide a mechanism by which a tool can request async progress thread support for ORTE 2015-12-04 08:26:57 -08:00
Jeff Squyres
ad35a363fa Merge pull request #1179 from jsquyres/pr/mpi-testsome-man-page-update 
Pr/mpi testsome man page update
 2015-12-04 05:55:33 -05:00
bosilca
8fee96c086 Merge pull request #1091 from bosilca/topic/datatype_span 
Cleanup the temporary memory allocation in collectives
 2015-12-03 19:25:04 -05:00
Jeff Squyres
0adcb5b5cd MPI_Testsome.3in: wrap some long lines 
Wrap some long lines; no other text or semantics changes.
 2015-12-03 17:06:43 -05:00
Jeff Squyres
11c571b568 MPI_Testsome.3in: add explicit verbiage about return values 
Instead of solely relying on the out value definitions in
MPI_Waitsome.3, explicitly copy this text here.

Note that the original text in this man page was copied verbatim from
the MPI spec; we've now added a bit more text (copied from
MPI_Waitsome.3in) that explains the out values so that users don't
have to cross-reference to another man page.

Thanks to Eric Schnetter for the suggestion.

Fixes open-mpi/ompi#1153
 2015-12-03 17:06:22 -05:00
Mike Dubman
dc3b138b7f Merge pull request #1178 from igor-ivanov/pr/oshmem-fix-preconnect_all 
oshmem: Add skew to the oshmem_preconnect_all
 2015-12-03 21:00:52 +02:00
Jeff Squyres
a25cf8065d Merge pull request #1176 from igor-ivanov/pr/oshmem-rm-java 
oshmem: Remove JAVA support
 2015-12-03 13:26:09 -05:00
Igor Ivanov
c4fc1ec081 oshmem: Add skew to the oshmem_preconnect_all 2015-12-03 18:32:26 +02:00
Igor Ivanov
63bc655b53 oshmem: Remove JAVA support 
There is a conclusion to remove java support
(see https://github.com/open-mpi/ompi-release/pull/787)
 2015-12-03 11:59:07 +02:00
Gilles Gouaillardet
a5440ade5f topo/treematch: do not invoke hwloc_topology_{init,load} 
* this is not necessary
 * this overwrites existing topology, that could be different if hwloc_base_topo_file is used
 2015-12-03 11:24:32 +09:00
George Bosilca
688108cf7f Patch submitted by @ggouaillardet on ticket #1091. 2015-12-02 20:42:18 -05:00
George Bosilca
4d00c59b2e Cleanup the memory handling for temporary buffers in 
some of the collective modules. Added a new function
opan_datatype_span, to compute the memory span of
count number of datatype, excluding the gaps in the
beginning and at the end. If a memory allocation is
made using the returned value, the gap (also returned)
should be removed from the allocated pointer.
 2015-12-02 20:42:18 -05:00
igor-ivanov
3def93ab60 Merge pull request #1169 from igor-ivanov/pr/oshmem-fix-scan-coverity 
oshmem: Fix scan coverity issues
 2015-12-02 18:37:44 +04:00
Igor Ivanov
5c061abf4e oshmem: Fix scan coverity issues 
1324740 - Resource leak
1304562 - Unchecked return value
1340514 - Dereference before null check
1340515 - Use of untrusted scalar value
1340516 - Use of untrusted string value
 2015-12-02 12:49:19 +02:00
Gilles Gouaillardet
351bd03249 ompi_proc_sentinel_to_name: clear the top left bit 2015-12-02 17:18:56 +09:00
Jeff Squyres
15325c8094 op/x86: change the owner to Ralph 
Cisco no longer cares about this component, but Intel might.
Transferring ownership to Ralph.
 2015-12-01 15:08:07 -08:00
rhc54
95909a171e Merge pull request #1171 from rhc54/topic/evconfig 
Ensure the embedded PMIx respects an OMPI-level --disable-debug
 2015-12-01 09:04:44 -08:00
Ralph Castain
9803d69d02 Ensure the embedded PMIx respects an OMPI-level --disable-debug 2015-12-01 08:00:24 -08:00
rhc54
ac892a667a Merge pull request #1168 from rhc54/topic/libevent 
Somehow, this got left out when merging PR #1109, so let's try it again.
 2015-12-01 07:56:36 -08:00
Artem Polyakov
6a4ec3396a Merge pull request #1164 from hjelmn/mlx5_atomics_update 
btl/openib: fix compile problems when using experimental verbs
 2015-12-01 19:14:31 +05:00
Ralph Castain
7ac5c082ff Somehow, this got left out when merging PR #1109, so let's try it again. 2015-12-01 06:02:29 -08:00
igor-ivanov
d8c85738ab Merge pull request #1151 from igor-ivanov/pr/opal-abort-vars 
Add new mca variables opal_abort_delay and opal_abort_print_stack
 2015-12-01 16:27:11 +04:00
Nathan Hjelm
406b9ff1e6 ompi/group: add helper function for creating plist groups 
This commit adds a helper function for creating groups from proc
lists. The function is used by ompi_comm_fill_rest to create the local
and remote groups.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-11-30 23:52:57 -07:00
Nathan Hjelm
5334d22a37 ompi/group: release ompi_proc_t's at group destruction 
This commit changes the way ompi_proc_t's are retained/released by
ompi_group_t's. Before this change ompi_proc_t's were retained once
for the group and then once for each retain of a group. This method
adds unnecessary overhead (need to traverse the group list each time
the group is retained) and causes problems when using an async
add_procs.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-11-30 23:03:47 -07:00
Nathan Hjelm
191aebb9c8 btl/openib: fix compile problems when using experimental verbs 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-11-30 22:21:26 -07:00
Ryan Grant
324534b191 Merge pull request #1161 from tkordenbrock/topic/add.triggered.scatter 
coll-portals4: add scatter and iscatter implementations that use Portals4 triggered operations
 2015-11-30 16:53:47 -07:00
Nathan Hjelm
22af95b266 ompi/proc: make proc system always thread safe 
This commit changes the OPAL_THREAD_LOCK/OPAL_THREAD_UNLOCK calls in
ompi/proc to opal_mutex_lock/opal_mutex_unlock. This will allow
multi-threaded BTLs the ability to creat ompi_proc_t's without having
to set opal_using_threads. There should be no performance hits as none
of the lock points are in the critical path.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-11-30 16:37:09 -07:00
Ryan Grant
e93755ce5a Merge pull request #1158 from tkordenbrock/topic/cleanup.triggered.gather 
coll-portals4: remove unneeded code from gather
 2015-11-30 15:52:56 -07:00
Todd Kordenbrock
4721b70dd5 coll-portals4: add scatter and iscatter implementations that use Portals4 triggered operations 
This commit adds implementations of scatter and iscatter using
Portals4 triggered operations.  Currently, the only algorithm
is linear.
 2015-11-30 15:07:18 -06:00
Nathan Hjelm
7382c0b052 Merge pull request #1160 from hjelmn/mlx5_atomics_update 
btl/openib: update experimental verbs support
 2015-11-30 13:21:10 -07:00
Nathan Hjelm
bb8e347371 btl/openib: update experimental verbs support 
This update adds an additional check (if supported) to see if 8-byte
atomics are supported by the hardware. If 8-byte atomics are not
supported the atomics support is disabled.

This commit also includes some cleanup.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-11-30 12:32:04 -07:00
Todd Kordenbrock
f6f525e0d8 coll-portals4: remove unneeded code from gather 
This commit removes two pieces of unneeded code from gather.  First
it removes destroy_tree() calls from linear_top(), because the
linear algorithm does not create a tree, so there is no need to
destroy it.  Second it removes unpack_bytes from the gather request
because it was calculated but never used.
 2015-11-30 10:38:51 -06:00
Gilles Gouaillardet
80f02518ff topo/base: correctly free the topo object in mca_topo_base_dist_graph_create_adjacent 2015-11-30 15:33:59 +09:00
Gilles Gouaillardet
8227bc6320 ompi_proc_find_and_add: use ompi_proc_allocate in order to update *both* ompi_proc_list and ompi_proc_hash 2015-11-30 14:00:59 +09:00
Gabriel Pichot
5e77bdeb25 Adds darwin headers directory with Darwin JDK 2015-11-28 17:54:43 +01:00
Mike Dubman
a7962bf996 Merge pull request #1154 from igor-ivanov/pr/warn-iso-c99-variadic-macro 
Align OSHMEM API with spec v1.2 (fix ISO C99 warning for variadic macro)
 2015-11-27 15:35:21 +02:00