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James Clark
20f5840cbb Add a compilation flag that adds unwind info to all files that are present in the stack starting from MPI_Init.
This is so when a debugger attaches using MPIR, it can step out of this stack back into main.
This cannot be done with certain aggressive optimisations and missing debug information.

Signed-off-by: James Clark <james.clark@arm.com>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>

Co-authored-by: Jeff Squyres <jsquyres@cisco.com>
2019-03-27 14:32:15 +00:00
Ralph Castain
8174286530 Sync nidmap to PRRTE to fix hetero topo problem
Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-03-26 08:24:09 -07:00
Ralph Castain
e56ee1e06a Remove the remaining cruft from dual oob transport
* When we moved to allowing dual rml/oob transports, we added a bunch of
stuff that is no longer needed. Remove it so as to simplify the
messaging system.

* Fix the routed/radix component so it correctly returns the parent's
vpid

Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-02-08 11:12:31 -08:00
Ralph Castain
125d236173 Move from the use of regex to compression
We've been fighting the battle of trying to create a regex generator and
parser that can handle arbitrary hostname schemes - without long-term
success. The worst of it is that there is no way of checking to see if
the computed regex is correct short of parsing it and doing a
character-by-character comparison with the original string. Ugh...there
has to be a better solution.

One option is to investigate using 3rd-party regex libraries as
those are coming from communities whose sole focus is resolving that
problem. However, someone would need to spend the time to investigate
it, and we'd have to find a license-friendly implementation.

Another option is to quit beating our heads against the wall and just
compress the information. It won't be as much of a reduction, but we
also won't keep hitting scenarios where things break. In this case, it
seems that "perfection" is definitely the enemy of "good enough".

This PR implements the compression option while retaining the
possibility of people adding regex-generating components. The
compression code used in ORTE is consolidated into the opal/compress
framework. That framework currently held bzip and gzip components for
use in compressing checkpoint files - since we no longer support C/R, I
have .opal_ignore'd those components.

However, I have left the original framework APIs alone in case someone
ever decides to redo C/R. The APIs of interest here are added to the
framework - specifically, the "compress_block" and "decompress_block"
functions. I then moved the ORTE zlib compression code into a new
component in this framework.

Unfortunately, the framework currently is a single-select one - i.e.,
only one active component at a time. Since I .opal_ignore'd the other
two and made the priority of zlib high, this isn't a problem. However,
if someone wants to re-enable bzip/gzip or add another component, they
might need to transition opal/compress to a multi-select framework.

Included changes:

* Consolidate the compression code into the opal/compress framework

* Move the ORTE zlib compression code into a new opal/compress/zlib
  component

* Ignore the bzip and gzip components in opal/compress framework

* Add a "compress_base_limit" MCA param to set the threshold above which
  we compress data - defaults to 4096 bytes

* Delete stale brucks and rcd components from orte/grpcomm framework

* Delete the orte/regx framework

* Update the launch system to use opal/compress instead of string regex

* Provide a default module if no zlib is available

* Fix some misc multi-node issues

* Properly generate the nidmap in response to a "connection warmup"
  message so the remote daemon knows the children it needs to launch.

* Remove stale references to orte_node_regex

* opal_byte_object_t's are not OPAL objects - properly release allocated
  memory.

* Set the topology

* Currently only handling homogeneous case

* Update the compress framework files to conform

* Consolidate open/close into one "frame" file. Ensure we open/close the
  framework

Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-02-08 11:11:14 -08:00
Ralph H Castain
fc81d0d519 Replace asprintf with opal_asprintf
Silence the flood of warnings from ORTE

Signed-off-by: Ralph H Castain <rhc@open-mpi.org>
2018-10-06 19:32:37 +00:00
Nathan Hjelm
fe6528b0d5 opal/atomic: always use C11 atomics if available
This commit disables the use of both the builtin and hand-written
atomics if proper C11 atomic support is detected. This is the first
step towards requiring the availability of C11 atomics for the C
compiler used to build Open MPI.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-14 10:51:05 -06:00
Ralph Castain
bc1d13ffbe Remove the orte_enable_instant_on MCA param
We have adequate protection to ensure that we only utilize the PMIx
features related to "instant on" when they are available, so this param
is no longer required and causes confusion.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-09-10 09:20:26 -07:00
Nathan Hjelm
551133fd1a orte/runtime: always set opal_using_threads for orted/mpirun
Both orted and mpirun use threads to speed up local process spawing.
In order to avoid data corruption when calling the opal_output
interface we need to ensure that opal_using_threads is set to true.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-08-01 08:53:22 -06:00
Ralph Castain
bcdb1f45ac Fix the multiple pe/proc option
Things got a little out of whack and we weren't actually processing the map-by modifiers, plus an error crept into the display of the binding report. So clean those up.

Thanks to @tonyreina for the error report

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-25 18:47:39 -07:00
Ralph Castain
795140e590 Make use of "instant-on" feature optional
The PMIx support for "instant on" remains experimental, so disable it by default. Provide an MCA param and corresponding command line option to enable it at runtime.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-17 02:42:00 -07:00
Gilles Gouaillardet
49d6658f60 Revert "orte_dt_print_node: correctly handle nodes with no alias(es)"
This reverts commit 866f449cffe652985c458055bab2a8876ab74657.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-04-25 11:43:35 +09:00
Gilles Gouaillardet
866f449cff orte_dt_print_node: correctly handle nodes with no alias(es)
Thanks Erico for reporting this issue

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-04-24 15:44:26 +09:00
Ralph Castain
0434b615b5 Update ORTE to support PMIx v3
This is a point-in-time update that includes support for several new PMIx features, mostly focused on debuggers and "instant on":

* initial prototype support for PMIx-based debuggers. For the moment, this is restricted to using the DVM. Supports direct launch of apps under debugger control, and indirect launch using prun as the intermediate launcher. Includes ability for debuggers to control the environment of both the launcher and the spawned app procs. Work continues on completing support for indirect launch

* IO forwarding for tools. Output of apps launched under tool control is directed to the tool and output there - includes support for XML formatting and output to files. Stdin can be forwarded from the tool to apps, but this hasn't been implemented in ORTE yet.

* Fabric integration for "instant on". Enable collection of network "blobs" to be delivered to network libraries on compute nodes prior to local proc spawn. Infrastructure is in place - implementation will come later.

* Harvesting and forwarding of envars. Enable network plugins to harvest envars and include them in the launch msg for setting the environment prior to local proc spawn. Currently, only OmniPath is supported. PMIx MCA params control which envars are included, and also allows envars to be excluded.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-03-02 02:00:31 -08:00
Gilles Gouaillardet
dd24c746dc output-filename: cleanup obsolete code.
Since output-filename has been moved to a per-job attribute,
remove the orte_output_filename global variable, and stop passing
this option to orted.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-02-15 10:40:44 +09:00
Ralph Castain
4cd7f3b202 Convert nidmap to regx framework
Handle the need for different regex generator/parsers by moving the
orte/util/nidmap and orte/util/regex code into a new "regx" framework.
Use the original code to complete a "fwd" component, and create a
scaffold for IBM's "reverse" component.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-10 20:28:21 -08:00
Gilles Gouaillardet
03da5218ea orte: remove some dead code related to the new tree_spawn method
Now that the daemon calls remote_spawn itself, there is no longer
a need for the "tree_spawn" command nor the associated command
processing code since the HNP is no longer sending a tree-spawn
message to the orted.

Thanks Ralph for the guidance !

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-01-04 09:35:17 +09:00
Ralph Castain
8f496b01b7 Try automatically adding local spawn threads to parallelize the fork/exec process to speed up the launch on large SMPs. Harvest the threads after initial spawn to minimize any impact on running jobs.
Change the determination of #spawn threads to be done on basis of #local procs in first job being spawned. Someone can look at an optimization that handles subsequent dynamic spawns that might be larger in size.

Leave the threads running, but blocked, for the life of the daemon, and use them to harvest the local procs as they terminate. This helps short-lived jobs in particular.

Add MCA params to set:
  * max number of spawn threads (default: 4)
  * set a specific number of spawn threads (default: -1, indicating no set number)
  * cutoff - minimum number of local procs before using spawn threads (default: 32)

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-11-29 19:54:00 -08:00
Ralph Castain
d85239e052 Cleanup some issues in connect/accept support across jobs started by different mpirun commands. Still not fully operational, but someone else will have to finish debugging it
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-08-17 11:58:48 -07:00
Nathan Hjelm
76320a8ba5 opal: rename opal_atomic_init to opal_atomic_lock_init
This function is used to initalize and opal atomic lock. The old name
was confusing.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-08-07 14:15:11 -06:00
Ralph Castain
f7e8780a42 Remove fortran support from platform file
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-20 21:02:30 -07:00
Ralph Castain
b225366012 Bring the ofi/rml component online by completing the wireup protocol for the daemons. Cleanup the current confusion over how connection info gets created and
passed to make it all flow thru the opal/pmix "put/get" operations. Update the PMIx code to latest master to pickup some required behaviors.

Remove the no-longer-required get_contact_info and set_contact_info from the RML layer.

Add an MCA param to allow the ofi/rml component to route messages if desired. This is mainly for experimentation at this point as we aren't sure if routing wi
ll be beneficial at large scales. Leave it "off" by default.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-20 21:01:57 -07:00
Ralph Castain
168e50bc13 Also need to avoid calling destruct on the opal_process_info struct after finalize
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-23 07:49:14 -07:00
Ralph Castain
38636f4f0a Ensure we properly cleanup on termination, including when terminating due to ctrl-c
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-21 06:33:37 -07:00
Ralph Castain
7b39f19f60 Fix the backend mapper algorithm for comm_spawn. The front and back ends need to get the nodes into the job map in the same order so that the ranking algorithms will reach the same results
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-08 08:00:52 -07:00
Ralph Castain
919d7fcf49 We cannot use OFI to determine when daemons can finalize as we don't see the "sockets" go away. So always use the OOB for the mgmt conduit - this provides the necessary termination signal AND ensures that IOF and other mgmt messages go solely across TCP.
Cleanup the way we look for matching OFI addresses by using the opal_net_samenetwork helper function. This now works for multi-network environments, but only using the socket provider

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-07 13:51:30 -07:00
Ralph Castain
93cf3c7203 Update OPAL and ORTE for thread safety
(I swear, if I look this over one more time, I'll puke)

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 12:30:57 -07:00
Ralph Castain
066d5eedce Shift the signal forwarding code to ess/base so it can be available to more than just the hnp component. Extend the slurm component to use it so that any signals given directly to the daemons by their slurmstepd get forwarded to their local clients
Check for NULL

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-02 10:59:14 -07:00
Ralph Castain
9a8811a246 Ensure that data from a job that was stored in ompi-server is purged once that job completes. Cleanup a few typos. Silence a Coverity warning
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-30 09:43:01 -07:00
Ralph Castain
9f60cd0fe7 Update the connect/accept support so we check to see if we have the proper infrastructure and RTE support, including whether we have ompi-server available if the connect/accept spans multiple applications. Print pretty help messages in all cases where we do not have support
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-27 10:47:08 -07:00
Ralph Castain
657e701c65 Add debug verbosity to the orte data server and pmix pub/lookup functions
Start updating the various mappers to the new procedure. Remove the stale lama component as it is now very out-of-date. Bring round_robin and PPR online, and modify the mindist component (but cannot test/debug it).

Remove unneeded test

Fix memory corruption by re-initializing variable to NULL in loop

Resolve the race condition identified by @ggouaillardet by resetting the
mapped flag within the same event where it was set. There is no need to
retain the flag beyond that point as it isn't used again.

Add a new job attribute ORTE_JOB_FULLY_DESCRIBED to indicate that all the job information (including locations and binding) is included in the launch message. Thus, the backend daemons do not need to do any map computation for the job. Use this for the seq, rankfile, and mindist mappers until someone decides to update them.

Note that this will maintain functionality, but means that users of those three mappers will see large launch messages and less performant scaling than those using the other mappers.

Have the mindist module add procs to the job's proc array as it is a fully described module

Protect the hnp-not-in-allocation case

Per path suggested by Gilles - protect the HNP node when it gets added in the absence of any other allocation or hostfile

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-25 18:41:27 -07:00
Ralph Castain
55f4b825af Add verbose output to nidmap code for debugging as this is a new, and sometimes fragile, feature
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-10 12:40:02 -07:00
Artem Polyakov
45898a9c65 opal/timing: add the draft of env-based timings
This commit adds new timing feature that uses environment variables to
expose timing information. This allows easy access to this data (if
timing is enabled) from any other part of the application for the subsequent
postprocessing.
In particular this will be integrated with OMPI-level timing framework that
whill use MPI_Reduce functionality to provide more compact and easy-to use
information.

This commit also adds the example of usage of this framework by annotating
rte_init function. The result is not used anywhere for now. It will be
postprocessed in subsequent commits.

NOTE: that functionality is currently disabled untill it will be verified at runtime

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:22 +06:00
Artem Polyakov
88ed79ea25 opal/timing: remove old framework
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:22 +06:00
Ralph Castain
74863a0ea4 Fix the DVM by ensuring that all nodes, even those that didn't participate (i.e., didn't have any local children) in a job, clean up all resources associated with that job upon its completion. With the advent of backend distributed mapping, nodes that weren't part of the job would still allocate resources on other nodes - and then start from that point when mapping the next job. This change ensures that all daemons start from the same point each time.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 17:31:38 -07:00
Ralph Castain
92c996487c Update how we pass the node regex so we pass _all_ nodes, even those without daemons. This allows the backend daemons to form a complete picture of the allocation. Include info on which nodes have daemons on them, and populate that info on the backend as well.
Set the daemons' state to "running" and mark them as "alive" by default when constructing the nidmap

Get the DVM running again

Fix direct modex by eliminating race condition caused by releasing data while sending it

Up the size limit before compressing

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-03 19:25:15 -07:00
Ralph Castain
dc85e7fde7 Provide a little more help on the error messages when an executable isn't found so we have some better idea where we were looking for it. Don't double-report such errors. Ensure the ORTE_ERROR_NAME doesn't get a NULL back for the string name of an error code as that might cause some systems to segfault
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-17 09:54:37 -07:00
Ralph Castain
48fc339718 Create an alternative mapping method that pushes responsibility
onto the backend daemons. By default, let mpirun only pack the app_context
info and send that to the backend daemons where the mapping will
be done. This significantly reduces the computational time on mpirun as it isn't
running up/down the topology tree computing thousands of binding
locations, and it reduces the launch message to a very small number of
bytes.

When running -novm, fall back to the old way of doing things
where mpirun computes the entire map and binding, and then sends
the full info to the backend daemon.

Add a new cmd line option/mca param --fwd-mpirun-port that allows
mpirun to dynamically select a port, but then passes that back to
all the other daemons so they will use that port as a static port
for their own wireup. In this mode, we no longer "phone home" directly
to mpirun, but instead use the static port to wireup at daemon
start. We then use the routing tree to rollup the initial
launch report, and limit the number of open sockets on mpirun's node.

Update ras simulator to track the new nidmap code

Cleanup some bugs in the nidmap regex code, and enhance the error message for not enough slots to include the host on which the problem is found.

Update gadget platform file

Initialize the range count when starting a new range

Fix the no-np case in managed allocation

Ensure DVM node usage gets cleaned up after each job

Update scaling.pl script to use --fwd-mpirun-port. Pre-connect the daemon to its parent during launch while we are otherwise waiting for the daemon's children to send their "phone home" rollup messages

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-07 20:43:12 -08:00
Jeff Squyres
fec519a793 hwloc: rename opal/mca/hwloc/hwloc.h -> hwloc-internal.h
Per a prior commit, the presence of "hwloc.h" can cause ambiguity when
using --with-hwloc=external (i.e., whether to include
opal/mca/hwloc/hwloc.h or whether to include the system-installed
hwloc.h).

This commit:

1. Renames opal/mca/hwloc/hwloc.h to hwloc-internal.h.
2. Adds opal/mca/hwloc/autogen.options to tell autogen.pl to expect to
   find hwloc-internal.h (instead of hwloc.h) in opal/mca/hwloc.
3. s@opal/mca/hwloc/hwloc.h@opal/mca/hwloc/hwloc-internal.h@g in the
   rest of the code base.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-28 07:48:42 -08:00
Ralph Castain
223495325d Fix binding policy bug and support pe=1 modifier
Allow someone to specify the "pe=N" modifier to a mapping policy when N=1. This equates to just "bind-to core", but helps people who use a script to set the PE policy. Fix a bug where setting the binding policy left a lingering "if-supported" flag that shouldn't be there.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 14:55:17 -08:00
Josh Hursey
31faf0a950 Merge pull request #2861 from jjhursey/topic/ibm/master/orted-timeout-improv
orterun: Add parameter to control when we give up on stack traces
2017-01-31 10:25:57 -06:00
Joshua Hursey
3c47432e3d orterun: Add parameter to control when we give up on stack traces
* MCA option to control how long we wait for stack traces:
   - orte_timeout_for_stack_trace INTEGER
     Default: 30
     Setting to <= 0 will cause it to wait forever
 * Useful when gathering stack traces from large jobs which might take
   a long time.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-27 09:16:35 -06:00
Josh Hursey
2e64bf42fb Merge pull request #2810 from jjhursey/fix/ibm/stdiag-to-stdout
Extend options for stddiag routing
2017-01-26 14:29:16 -06:00
Gilles Gouaillardet
ef10d3fd7b orte: add missing include file
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-25 16:15:20 +09:00
Joshua Hursey
dcd9801f7c orte/iof: Add orte_map_stddiag_to_stdout option
* Similar to `orte_map_stddiag_to_stderr` except it redirects `stddiag`
   to `stdout` instead of `stderr`.
 * Add protection so that the user canot supply both:
   - `orte_map_stddiag_to_stderr`
   - `orte_map_stddiag_to_stdout`

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-24 16:22:59 -06:00
Ralph Castain
ef86707fbe Deprecate the --slot-list paramaeter in favor of --cpu-list. Remove the --cpu-set param (mark it as deprecated) and use --cpu-list instead as it was confusing having the two params. The --cpu-list param defines the cpus to be used by procs of this job, and the binding policy will be overlayed on top of it.
Note: since the discovered cpus are filtered against this list, #slots will be set to the #cpus in the list if no slot values are given in a -host or -hostname specification.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-24 13:33:22 -08:00
Gilles Gouaillardet
9d6e0482a6 orte/data_server: plug a memory leak in orte_data_server()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-24 09:12:47 +09:00
Ralph Castain
6560617c04 Fix comm_spawn and orte-dvm by resetting all used "node mapped" flags after building the child list
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-22 05:55:53 -08:00
Ralph Castain
be3ef77739 Improve packing efficiency by raising the initial buffer size and modifying the extension code. Flag if a job map has had its nodes added so we don't have to loop repeatedly to check it.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-21 14:03:19 -08:00
Ralph Castain
368684bd63 Revert e9bc293 and try a different approach for scalably dealing with hetero clusters. Have each orted send back its topo "signature". If mpirun detects that this signature has not been seen before, then ask for that daemon to send back its full topology description. This allows the system to only get the topology once for each unique topo in the cluster.
Cleanup a typo, and remove no longer needed MCA params for hetero nodes and hetero apps. Hetero nodes will always be automatically detected. We don't support a mix of 32 and 64 bit apps

Modify the orte_node_t to use orte_topology_t instead of hwloc_topology_t, updating all the places that use it. Ensure that we properly update topology when we see a different one on a compute node.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-18 10:22:15 -08:00
Ralph Castain
e9bc2934be Add an MCA param "hnp_on_smgmt_node" that mpirun can use to tell the orteds to ignore its topology signature as mpirun is executing on a system mgmt node, and hence a different topology than the compute nodes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-16 19:32:01 -08:00