1
1
Граф коммитов

6194 Коммитов

Автор SHA1 Сообщение Дата
Vishwanath Venkatesan
2ddbfbeb26 Setting the default stripe size for lustre to 64KB. This is an MCA parameter, can be overridden at runtime if needed.
This commit was SVN r27404.
2012-10-04 20:56:26 +00:00
Eugene Loh
25ad84b925 Ensure that MPI_Status objects have proper alignment:
- fix the Fortran layer to use new macros to convert Fortran-to-C status
- change the C internals to pull out old OMPI_SET_STATUS* macros

Also, change name of "status" argument in topo_test_f.c to "topo_type".

This commit was SVN r27403.
2012-10-04 14:39:51 +00:00
Yael Dayan
0122cf6cbb openib: added Mellanox ConnectIB device ID and params to the device parameters ini file
This commit was SVN r27402.
2012-10-04 13:20:47 +00:00
Pavel Shamis
e9df33c10b Fixing a coupe of issues in the iboffload code. It should fix the XRC compilation issue.
This commit was SVN r27400.
2012-10-03 15:44:51 +00:00
Jeff Squyres
8c369224bf More common/verbs improvements:
* Add OMPI_COMMON_VERBS_FLAGS_NOT_RC, which looks for a device	that
   does ''not'' support RC
 * Add ompi_common_verbs_find_max_inline(), and	remove that code from
   the openib BTL component

This commit was SVN r27393.
2012-10-03 00:57:39 +00:00
Jeff Squyres
82171eef9d Fixes from Ake Sandgren for MPI_SIZEOF for the TKR mpi module
implementation.  This was already fixed in the ignore TKR mpi module.

This commit was SVN r27392.
2012-10-02 16:29:06 +00:00
Nathan Hjelm
9200473a59 mtl/psm: do not let psm set processor affinity
This commit was SVN r27389.
2012-10-02 15:56:51 +00:00
Vishwanath Venkatesan
76dc8a7c55 Fix for two_phase_read_all for multiple cycles.
This commit was SVN r27388.
2012-10-01 19:14:14 +00:00
Eugene Loh
11f8dcb538 Update Mprobe/Improbe man page for MPI_PROC_NULL case and
mprobe.c/improbe.c for MPI_STATUS_IGNORE/MPI_PROC_NULL case.

This commit was SVN r27386.
2012-10-01 05:18:21 +00:00
Ralph Castain
54db4c35eb Get the trunk to build again when --without-hwloc is specified. Move a couple of key type definitions and utilities out from under the HAVE_HWLOC test so they are always available as they don't really depend on hwloc's presence. Tell two compnents not to build if hwloc is disabled:
ompi/mca/sbgp/basesmsocket
orte/mca/rmaps/lama

Remove stale configure.params files from the sbgp framework as the OMPI build system no longer looks at those files.

This commit was SVN r27377.
2012-09-26 23:24:27 +00:00
George Bosilca
48f528f142 icc complains about the missing prototype.
This commit was SVN r27373.
2012-09-26 09:56:14 +00:00
George Bosilca
890dedf13f Cleanup.
This commit was SVN r27372.
2012-09-26 09:44:46 +00:00
Vishwanath Venkatesan
c6751eaf70 Fixing all two_phase read_all bugs,
1. Multiple aggregator with non-contiguous datatype,
2. Memory corruption bugs.

Cleaned version, with proper initialization and memory management.

This commit was SVN r27370.
2012-09-26 00:16:08 +00:00
Vishwanath Venkatesan
2e2a46b2be Fixing two-phase write all bug for non-contiguous file-type.
This commit was SVN r27369.
2012-09-26 00:10:40 +00:00
Jeff Squyres
0b45d4ba86 Per discussion with Ralph and Nathan, disable UDCM for now. It's
borked and needs some surgery to get back on its feet.

This commit was SVN r27335.
2012-09-13 18:25:10 +00:00
Jeff Squyres
30d9c36275 FreeBSD detection improvement. Thanks to Brooks Davis for the patch.
This commit was SVN r27334.
2012-09-13 13:25:04 +00:00
Jeff Squyres
3cc8b0461a More updates to common verbs infrastructure:
* Moved "check basics" sanity check from openib BTL to common/verbs
   (which also allows us to have openib ''not'' include
   <infiniband/driver.h>, which is a Very Good Thing)
 * Add new ompi_common_verbs_qp_test() function, which tests to see
   whether a device supports RC and/or UD QPs.  The openib BTL now
   uses this function to ensure that the device supports RC QPs.
 * Rename ompi_common_verbs_find_ibv_ports() to be
   ompi_common_verbs_find_ports() -- the "ibv" was redundant.
 * Re-work ompi_common_verbs_find_ports() to use
   ompi_common_verbs_qp_test() instead of testing for RC/UD QPs itself
 * Add bunches of opal_output_verbose() to the find_ports() routine
   (to help diagnosing connectivity problems -- imaging running with
   --mca btl_base_verbose 10; you'll see all the find_ports() test
   results)
 * Make ompi_common_verbs_qp_test() warn if devices/ports are supplied
   in the if_include/if_exclude strings that do not exists (quite
   similar to what the openib BTL does today).
 * Add ompi_common_verbs_mca_register() function, which registers
   common verbs MCA params.  It will also register MCA param synonyms
   for thse MCA params to upper-level components (e.g.,
   btl_<upper-level-component>_<the-mca-param>). 
   * common_verbs_warn_nonexistent_if: warn if
     if_include/if_exclude-specified devices or ports do not exist.  

This commit was SVN r27332.
2012-09-12 20:47:47 +00:00
Pavel Shamis
1e7b958c2a Cleaning warning in collectives code
This commit was SVN r27331.
2012-09-12 19:47:23 +00:00
Jeff Squyres
171f6efd70 Don't free heap objects!
This commit was SVN r27326.
2012-09-12 15:11:56 +00:00
Matthias Jurenz
e643c09dee Changes to OTF:
- otfaux:
		- fixed build error on Solaris and NetBSD (removed -lm from library dependencies)
Changes to VT:
	- vtunify:
		- disable OpenMP parallelization if PGI compiler version < 9 is used (threadprivate not supported)

This commit was SVN r27316.
2012-09-12 09:03:10 +00:00
Ralph Castain
b22fc54d9b Remove unused variable
This commit was SVN r27312.
2012-09-12 08:41:48 +00:00
Jeff Squyres
a7ea880d0a Refs trac:3309
* Minor man page tweaks
 * Use existing ompi_mpi_thread_requested global

This commit was SVN r27308.

The following Trac tickets were found above:
  Ticket 3309 --> https://svn.open-mpi.org/trac/ompi/ticket/3309
2012-09-11 21:12:06 +00:00
Ralph Castain
bc1300f5cc Remove debug
This commit was SVN r27307.
2012-09-11 20:54:04 +00:00
Jeff Squyres
fb2e543a57 Refs trac:3275.
We ran into a case where the OMPI SVN trunk grew a new acceptable MCA
parameter value, but this new value was not accepted on the v1.6
branch (hwloc_base_mem_bind_failure_action -- on the trunk it accepts
the value "silent", but on the older v1.6 branch, it doesn't).  If you
set "hwloc_base_mem_bind_failure_action=silent" in the default MCA
params file and then accidentally ran with the v1.6 branch, every OMPI
executable (including ompi_info) just failed because hwloc_base_open()
would say "hey, 'silent' is not a valid value for
hwloc_base_mem_bind_failure_action!".  Kaboom.

The only problem is that it didn't give you any indication of where
this value was being set.  Quite maddening, from a user perspective.

So we changed the ompi_info handles this case.  If any framework open
function return OMPI_ERR_BAD_PARAM (either because its base MCA params
got a bad value or because one of its component register/open
functions return OMPI_ERR_BAD_PARAM), ompi_info will stop, print out
a warning that it received and error, and then dump out the parameters
that it has received so far in the framework that had a problem.

At a minimum, this will show the user the MCA param that had an error
(it's usually the last one), and ''where it was set from'' (so that
they can go fix it).  

We updated ompi_info to check for O???_ERR_BAD_PARAM from each from
the framework opens.  Also updated the doxygen docs in mca.h for this
O???_BAD_PARAM behavior.  And we noticed that mca.h had MCA_SUCCESS
and MCA_ERR_??? codes.  Why?  I think we used them in exactly one
place in the code base (mca_base_components_open.c).  So we deleted
those and just used the normal OPAL_* codes instead.

While we were doing this, we also cleaned up a little memory
management during ompi_info/orte-info/opal-info finalization.
Valgrind still reports a truckload of memory still in use at ompi_info
termination, but they mostly look to be components not freeing
memory/resources properly (and outside the scope of this fix).

This commit was SVN r27306.

The following Trac tickets were found above:
  Ticket 3275 --> https://svn.open-mpi.org/trac/ompi/ticket/3275
2012-09-11 20:47:24 +00:00
Ralph Castain
ffb8c2a2ba Add the MPI_INFO_ENV man page
This commit was SVN r27293.
2012-09-11 17:35:32 +00:00
Ralph Castain
fb4af5e29c Implement the rest of MPI-3 ticket #313 based on side-bar agreement with MPICH2 folks. Fix a bug in the original ompi_info code that put the NULL terminator one position too far if the returned string exceeded MPI_MAX_INFO_VAL in length in ompi_info_get.
This commit was SVN r27292.
2012-09-11 17:03:49 +00:00
Shiqing Fan
ec4cf39925 Windows doesn't need to exclude any interface by default. This will avoid tcp warnings.
This commit was SVN r27291.
2012-09-11 15:39:37 +00:00
Shiqing Fan
0c4c2a5f5d Revert r27283. A better solution is found. Thanks to Ralph anyway.
This commit was SVN r27290.

The following SVN revision numbers were found above:
  r27283 --> open-mpi/ompi@38bcd86ae4
2012-09-11 15:37:22 +00:00
Ralph Castain
38bcd86ae4 Per request by Shiqing, specifically exclude the "lo" interface from the TCP btl. Apparently, Windows sometimes fails to resolve the 127.0.0.1 to "lo", causing subsequent failures.
This commit was SVN r27283.
2012-09-10 16:22:46 +00:00
Matthias Jurenz
f5ffb4783c Changes to VT:
- configure: do not build OpenMP support if CFLAGS contains a compiler flag for disabling handling OpenMP directives (e.g. -fno-openmp, -nomp, -hnoomp)
	  Fixes trac:3117

This commit was SVN r27282.

The following Trac tickets were found above:
  Ticket 3117 --> https://svn.open-mpi.org/trac/ompi/ticket/3117
2012-09-10 14:29:47 +00:00
Matthias Jurenz
ef0e8f859a Changes to OTF:
- general:
		- incremented version number ro 1.11.3openmpi
	- otfaux:
		- fixed build error when using the Oracle compiler on Solaris. (removed usage of too recent rint() function)
		  Fixes trac:3257

This commit was SVN r27279.

The following Trac tickets were found above:
  Ticket 3257 --> https://svn.open-mpi.org/trac/ompi/ticket/3257
2012-09-10 12:59:07 +00:00
Jeff Squyres
b793e4ebc6 Now that Absoft has fixed the problem in their compiler, revert the
patch that helped them test (r27184).  Thanks Abosoft!

This commit was SVN r27277.

The following SVN revision numbers were found above:
  r27184 --> open-mpi/ompi@a951a5ee99
2012-09-10 12:54:24 +00:00
Vishwanath Venkatesan
6d9d0f2968 Initialize the iov_count, this crashes static write/read in certain platforms while decoding datatype
This commit was SVN r27273.
2012-09-08 00:40:21 +00:00
Jeff Squyres
dd254cc202 OMPI_HAVE_IBV_LINK_LAYER does not exist. Instead, check defined(HAVE_IBV_LINK_LAYER_ETHERNET).
This commit was SVN r27251.
2012-09-06 18:25:36 +00:00
Jeff Squyres
0d2962ebf0 Fixes trac:3294: space for the periods has already been allocated by
ompi_comm_split(), and the entire set of periods from the old
communicator have already been copied to the new communicator.  But up
here in mca_topo_base_cart_sub(), we need to subset the periods that
are actually stored on the new communicator according to remain_dims
(just like we did for the set of dimensions).

This commit renames a few variables to be a little less misleading,
and then adds a loop to copy over the periods information.  I could
have added this into the first loop (that subset-copies the
dimensions), but this code is already confusing enough and this is not
a performance-critical section: so I made it a new loop.

Note that all the topo code will be revamped a bit when the new
MPI-2.2 topo stuff (currently off in a mercurial branch) finally makes
it back to the SVN trunk.  But that new stuff will only get to v1.7 --
this commit will need to be CMR'ed to v1.6.x.

cmr:v1.7
cmr:v1.6.2

This commit was SVN r27248.

The following Trac tickets were found above:
  Ticket 3294 --> https://svn.open-mpi.org/trac/ompi/ticket/3294
2012-09-06 14:16:29 +00:00
Vishwanath Venkatesan
b75d877a3f Removing .ompi_ignore for the lustre component.
This commit was SVN r27247.
2012-09-05 22:20:18 +00:00
Vishwanath Venkatesan
640aca6654 Modifying the file view generation to remove the merging of offset-length pair.
Its no longer needed as the default file view makes sure the chunks are large enough.

This commit was SVN r27246.
2012-09-05 21:00:47 +00:00
Brian Barrett
fa4c2af9ed THe Portals 4 reference implementation will sometimes return a NI_FLOWCTL for both a
send and an ack.  I'm not sure whether this violates the spec, so work around until
we decide...

This commit was SVN r27244.
2012-09-05 19:36:19 +00:00
Jeff Squyres
7fbaaff94e Always define OMPI_HAVE_RDMAOE; don't define it conditionally.
This commit was SVN r27229.
2012-09-04 15:49:09 +00:00
Jeff Squyres
9feb8d8879 Oops; the error paths were not correct on the initial commit. Fixed.
This commit was SVN r27228.
2012-09-04 15:48:44 +00:00
Aleksey Senin
33ae1fe6c7 Fix untitialized return code in ompi_mtl_mxm_add_procs function.
This commit was SVN r27216.
2012-09-02 13:17:49 +00:00
Yevgeny Kliteynik
3fe239702a Fixed compilation error
Thanks to Alex Margolin for the fix

This commit was SVN r27215.
2012-09-02 08:26:30 +00:00
Jeff Squyres
341ce2f9a4 Per some discussions between LANL, Cisco, ORNAL, and Mellanox, move
some new common OpenFabrics functionality to ompi/mca/common/verbs.
Also move everything that was in ompi/mca/common/ofautils under
ompi/mca/common/verbs.  

 * Move ofautils -> verbs
 * Add new functionality in ompi/mca/common/verbs (see doxygen
 * comments in ompi/mca/common/verbs/common_verbs.h for details):
   * ompi_common_verbs_find_ibv_ports()
   * ompi_common_verbs_port_bw()
   * ompi_common_verbs_mtu()
   * '''If you're writing verbs-based code, you should be using this
     common functionality'''
 * Adapt openib BTL to use some trivial common functionality in
   common/verbs
 * Don't use "#ifdef OMPI_HAVE_RDMAOE",use 
   "#if defined(HAVE_IBV_LINK_LAYER_ETHERNET)"
 * Update the following to include/link against common/verbs
   * bcol/iboffload
   * sbgp/ibnet
   * btl/openib

This commit was SVN r27212.
2012-09-01 01:42:37 +00:00
Pavel Shamis
888b04ab36 Fixing gcc 4.7.1 warning in ptpcoll bcol. Refs trac:3243.
This commit was SVN r27209.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-31 21:16:58 +00:00
Josh Hursey
bdcf1717dd Fix an unchecked return code - Thanks Jeff S. for noticing it.
This commit was SVN r27201.
2012-08-31 16:12:03 +00:00
Ralph Castain
6319014ab0 Sigh - get the end of the loop at the right place
This commit was SVN r27197.
2012-08-31 15:54:11 +00:00
Ralph Castain
7ac257e169 At least prevent the segfault if a proc isn't found in a sparse group
This commit was SVN r27196.
2012-08-31 15:13:52 +00:00
Jeff Squyres
a951a5ee99 Refs trac:3248
Absoft has determined exactly what the problem is (private members in
derived data typed when compiled with -g), but does not yet have a
timeline for fixing it.

Add a temporary override for Absoft until they are able to fix their
compiler.  This switch will at least allow us to MTT test the rest of
the mpi_f08 functionality with Absoft.

This commit was SVN r27184.

The following Trac tickets were found above:
  Ticket 3248 --> https://svn.open-mpi.org/trac/ompi/ticket/3248
2012-08-30 13:56:04 +00:00
Pavel Shamis
ecbbfcd6dd Fixing typo in iboffload code.
Refs trac:3243

This commit was SVN r27182.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-29 21:48:47 +00:00
Pavel Shamis
8cf3c95494 Fixing ML COLL compilation issues on some SUN platforms. For more detail see following mail thread:
http://www.open-mpi.org/community/lists/devel/2012/08/11448.php
A lot of thanks to Paul Hargrove for the issue analysis and patch testing.
Refs trac:3243

This commit was SVN r27178.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-29 14:10:42 +00:00
Aleksey Senin
68e0894a58 MXM send/recv request changes.
Adapt OMPI to the latest MXM changes in send/recv request.
Use memory handle structure instead of memory key.

This commit was SVN r27155.
2012-08-28 05:57:36 +00:00
Vishwanath Venkatesan
6ee377c4f5 Modifying the file-open to use the amode argument instead of file structure values for lustre component
This commit was SVN r27154.
2012-08-27 21:13:23 +00:00
Vishwanath Venkatesan
91104cbdca Modifying the file-open to use the amode argument instead of file structure values.
This commit was SVN r27153.
2012-08-27 21:12:56 +00:00
Vishwanath Venkatesan
bf58af295b Changes to the two_phase implementation, for supporting the
data-seiving feature of two-phase algorithm. 

This commit was SVN r27152.
2012-08-27 21:11:05 +00:00
Vishwanath Venkatesan
960c47f604 Changes to io_ompio.c to support data-seiving in two-phase I/O.
This commit was SVN r27151.
2012-08-27 21:09:08 +00:00
Ralph Castain
9f779f115d Add the positioned file directory to MPI_INFO_ENV
This commit was SVN r27146.
2012-08-26 16:21:03 +00:00
Yevgeny Kliteynik
8b5d634231 Enable support for FCA v2.5
This commit was SVN r27145.
2012-08-26 15:20:46 +00:00
Jeff Squyres
e5babf830a Fixes trac:3258: add btl_openib_abort_not_enough_reg_mem MCA parameter
that causes MPI jobs to abort if there is not enough registered memory
available (vs. just warning).

This commit was SVN r27140.

The following Trac tickets were found above:
  Ticket 3258 --> https://svn.open-mpi.org/trac/ompi/ticket/3258
2012-08-25 11:39:06 +00:00
Jeff Squyres
dd5876f74e Add optimization (i.e., avoid malloc(0)) in the (count==0) case. Just
set the correct return values and return.

This commit was SVN r27133.
2012-08-24 16:12:01 +00:00
Jeff Squyres
b08eaae9a2 The MPI spec says that we are supposed to return an empty status in
the (count==0) case.

This commit was SVN r27132.
2012-08-24 16:11:29 +00:00
Matthias Jurenz
a1f3d63278 Fixed build error when compiling VT within Open MPI using the PGI compiler:
The Open MPI configure automatically adds the -D_REENTRANT flag to CPPFLAGS. This causes that one of the PGI STL headers includes the omp.h header - unfortunately the fake one located in tools/vtwrapper/ instead of the real one. Thus, several OpenMP symbols were undefined and the compiler aborted.

This commit was SVN r27130.
2012-08-24 08:34:24 +00:00
Ralph Castain
e0c39c94e8 Complete the cleanup of the preload files system. Remove the dest_dir option as moving things to arbitrary locations - especially absolute paths - can prove disastrous. Remove the preload_libs option as these can be treated as just files. Cleanup some of the pack/unpack code as the dss handles NULL strings just fine. Deal a little better with absolute paths, noting that tar now strips the leading '/' for us (showing my age as it didn't used to do so).
Remove the odls_base_state.c file as that code is now covered by the new broadcast form of preload_files.

This commit was SVN r27127.
2012-08-24 02:28:29 +00:00
Jeff Squyres
81cd3e77cf Set flag for the Absoft compiler so that it doesn't complain
incessantly about ignore TKR pragmas that it doesn't understand.

This commit was SVN r27124.
2012-08-23 20:13:25 +00:00
Shiqing Fan
d141d94bd7 Include the new .windows files into the tarball.
This commit was SVN r27121.
2012-08-23 12:50:51 +00:00
Pavel Shamis
0c10bc9853 Fixing iboffload compilation issues on some MLNX platforms (on behalf of Joshua Ladd). Refs trac:3243
This commit was SVN r27120.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-23 12:33:23 +00:00
Jeff Squyres
dd601b7de8 More fortran fixes:
* More "assumed shape" -> "assumed rank" text fixes
 * Don't put a comment after "#endif" in .F90 files; gfortran hates that
 * Fix OMPI_PROCEDURE to work properly (i.e., OMPI_HAVE_PROCEDURE ->
   OMPI_FORTRAN_HAVE_PROCEDURE), and add all the required "use ::
   mpi_f08_interface_callbacks" now that OMPI_PROCEDURE is now working

This commit was SVN r27119.
2012-08-23 10:07:08 +00:00
Shiqing Fan
cc20409f60 A few more header protection.
Replace "ERROR" with "error".
Remove redefinitions of mca_sbgp_base_module_t.

This commit was SVN r27109.
2012-08-22 14:53:46 +00:00
Shiqing Fan
95b9552546 include several components for Windows build.
This commit was SVN r27108.
2012-08-22 14:46:49 +00:00
Shiqing Fan
9986cea044 BEGIN_C_DECLS is missing.
This commit was SVN r27107.
2012-08-22 14:14:45 +00:00
Shiqing Fan
f746fe152f * change variable iov_len to iovec_len, in order to fix the conflict with the io vector support on Windows.
* several include header protection
* do not use ERROR, it's preserved for Visual Studio, use error instead.

This commit was SVN r27106.
2012-08-22 13:36:23 +00:00
Shiqing Fan
b0ef486304 exclude one file that is not compatible for Windows.
This commit was SVN r27105.
2012-08-22 13:06:33 +00:00
Pavel Shamis
5cedbb843c Fixing compilation problems in ML collective component on SUN's systems. Thank you to Eugene Loh (Oracle) for discovering the problem and pin-pointing the solution. Refs trac:3243.
This commit was SVN r27100.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-21 17:43:24 +00:00
Jeff Squyres
c8cee23ee7 Priorities really shouldn't be less than 0.
This commit was SVN r27098.
2012-08-21 15:47:15 +00:00
Ralph Castain
dacb07000d Turn udcm and ud oob off by default, but allow them to build and be used if someone wants to test them
cmr:v1.7

This commit was SVN r27097.
2012-08-21 15:18:34 +00:00
Pavel Shamis
d5628fa62b More warnings clean up in the collectives code on behalf of Joshua Ladd. Refs trac:3243.
This commit was SVN r27090.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-17 17:05:31 +00:00
Pavel Shamis
6fac989588 Cleaning warnings in collectives code. Refs trac:3243.
This commit was SVN r27089.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-17 15:36:13 +00:00
Jeff Squyres
7642656aa7 Add more missing files so that dist tarballs aren't borked. Refs trac:3243.
This commit was SVN r27086.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-17 00:47:10 +00:00
Jeff Squyres
2102c05504 Add missing .windows files. Refs trac:3243.
This commit was SVN r27083.

The following Trac tickets were found above:
  Ticket 3243 --> https://svn.open-mpi.org/trac/ompi/ticket/3243
2012-08-16 23:38:03 +00:00
Ralph Castain
69753c37ef Turn off one place that won't compile if ompi progress threads enabled because it calls a non-existent function
This commit was SVN r27082.
2012-08-16 22:53:14 +00:00
Jeff Squyres
fc3ecd5d5a Remove generated file.
This commit was SVN r27080.
2012-08-16 22:08:04 +00:00
Ralph Castain
eda4cd5aa7 Cleanup warnings for improper use of C++ comment style, set ignores
This commit was SVN r27079.
2012-08-16 21:52:14 +00:00
Pavel Shamis
b89f8fabc9 Adding Hierarchical Collectives project to the Open MPI trunk.
The project includes following components and frameworks: 
- ML Collective component
- NETPATTERNS and COMMPATTERNS common components
- BCOL framework
- SBGP framework

Note: By default the ML collective component is disabled. In order to enable
new collectives user should bump up the priority of ml component (coll_ml_priority)

=============================================

Primary Contributors (in alphabetical order):

Ishai Rabinovich (Mellanox)
Joshua S. Ladd (ORNL / Mellanox)
Manjunath Gorentla Venkata (ORNL)
Mike Dubman (Mellanox)
Noam Bloch (Mellanox)
Pavel (Pasha) Shamis (ORNL / Mellanox)
Richard Graham (ORNL / Mellanox)
Vasily Filipov (Mellanox)

This commit was SVN r27078.
2012-08-16 19:11:35 +00:00
Ralph Castain
ce3650faea Get it to compile when --enable-ompi-progress-threads
This commit was SVN r27077.
2012-08-16 19:00:44 +00:00
Ralph Castain
42b7ab5103 Dang - we set it to 1 instead of yes
This commit was SVN r27076.
2012-08-16 19:00:16 +00:00
Ralph Castain
7a55d3d3d0 Print a nice warning and error out if attempting to enable OMPI progress threads without also enabling ORTE progress threads, which in turn requires libevent thread support.
May not be required long term, but as Chris points out, you need all three right now.

This commit was SVN r27074.
2012-08-16 18:02:35 +00:00
Ralph Castain
b2cd2b1289 Allow developers to enable OMPI progress threads for debugging purposes. Warn and error out if ORTE progress threads are enabled, but they forgot to enable the libevent thread support.
This commit was SVN r27071.
2012-08-16 17:50:52 +00:00
Jeff Squyres
a4e97fb4c0 Ensure we assign "err" properly when invoking MCA_PML_CALLs. Although
technically this is a necessary thing to do, it wasn't a tragedy that
we didn't have it because err was initialize to 0 in the beginning of
the functions where this problem occurred.  Also, OMPI will likely
abort if one of the MCA_PML_CALLs actually incurs an error (or, even
if it doesn't, MPI doesn't define the behavior anyway ;-) ).  

But looking forward to an FT-aware world, fixing this issue is a Good
Thing.  Many thanks to Hristo Iliev for pointing out the issue.

This commit was SVN r27070.
2012-08-16 17:49:48 +00:00
Yael Dayan
b3b8a2a23a function mca_btl_openib_endpoint_post_send can return 3 statuses:
- OMPI_SUCCESS
- OMPI_ERROR
- OMPI_ERR_RESOURCE_BUSY

If an "OMPI_ERR_OUT_OF_RESOURCE" occurs, the request is added to the pending list, and will be handled later. An error message 
should not be printed to the user in this case. This is not an error, but rather a notification of a possible valid condition.
Only in the case of "OMPI_ERROR" should it be printed to the user.

This commit was SVN r27065.
2012-08-16 07:04:40 +00:00
Christopher Yeoh
cc091f4979 Adds synchronisation between main thread and service thread in
btl_openib_connect_udcm when notifying not to listen to an fd to ensure
that the main thread does not continue until the service thread has
processed the message

Adds ability to send message to openib async thread to tell it to
ignore the ERR state on a specific QP. Adds this call to udcm_module_finalize
so when we set the error state on the QP it doesn't cause the 
openib async thread to abort the mpi program prematurely

Fixes trac:3161

This commit was SVN r27064.

The following Trac tickets were found above:
  Ticket 3161 --> https://svn.open-mpi.org/trac/ompi/ticket/3161
2012-08-16 03:56:21 +00:00
Samuel Gutierrez
7867330dcc Fix the PSM MTL in trunk by gathering node locality information differently.
This commit was SVN r27063.
2012-08-16 00:50:24 +00:00
Jeff Squyres
6e463c4ef1 Remove extra semicolon. Thanks to John Foster for pointing out the
issue. 

This commit was SVN r27052.
2012-08-15 18:36:59 +00:00
Jeff Squyres
0ef6782b0b * Fix some comments to update to the new Fortran binding directory
structure
 * Minor optimization: if MPI_Test returns flags==.FALSE., don't copy
   over the request/status to the OUT variables
 * Update comments about .TRUE./.FALSE. compiler values

This commit was SVN r27041.
2012-08-14 23:13:32 +00:00
Jeff Squyres
4e3b02e836 This is an amazingly long-lived bug; AFAICT, this has been around
forever.  

Don't copy a value back to the user's buffer unless the FLAG was set
to .TRUE. (i.e., indicating that we found the key).

This commit was SVN r27040.
2012-08-14 23:10:21 +00:00
Jeff Squyres
5594c90fce * Minor touch-ups to ompi/info/info.c to distinguish between keys and
vals.
 * Note that the pre-defined Info objects don't need to have fortran
   indexes assigned; they should already be assigned in the
   constructor.  So add an assert() to ensure that this really happens
   properly. 
 * Add MPI_ENV_INFO to the Fortran interfaces

This commit was SVN r27039.
2012-08-14 23:05:41 +00:00
Jeff Squyres
7a4d6f05cf It is valid to call MPI_Init(NULL, NULL), so be sure to handle the
case where the passed-in argv is NULL.

This commit was SVN r27029.
2012-08-14 16:33:53 +00:00
Ralph Castain
589acf550c Improve the new MPI_INFO_ENV to better handle Java applications and to correctly report the info for singletons.
This commit was SVN r27025.
2012-08-13 22:13:49 +00:00
Ralph Castain
360dcd5f50 Protect ompi_info_init from java's sad behavior of removing the cmd from argv
This commit was SVN r27020.
2012-08-13 18:59:38 +00:00
Nathan Hjelm
4bde7f3efe silence warning
This commit was SVN r27019.
2012-08-13 17:43:36 +00:00
Nathan Hjelm
702e6d5a68 pml/ob1: fix bugs in mca_pml_ob1_recv_request_progress_rget
This commit was SVN r27018.
2012-08-13 16:26:06 +00:00
Jeff Squyres
02e2c88224 Back out r26869 (i.e., put back a single per-peer QP in the default
receive queues value) so that we don't break the use of RDMA CM, and
therefore break RoCE.

This commit was SVN r27017.

The following SVN revision numbers were found above:
  r26869 --> open-mpi/ompi@fe0e7f81df
2012-08-13 15:57:21 +00:00
Ralph Castain
c90b7380c1 Sigh - of course, they changed the name of the silly MPI_Info object in the final standard, but not in the proposal. So change to the new MPI_INFO_ENV name. Also, don't set unknown values to "N/A", but just leave them unset.
This commit was SVN r27012.
2012-08-12 05:00:57 +00:00
Ralph Castain
cb48fd52d4 Implement the MPI_Info part of MPI-3 Ticket 313. Add an MPI_info object MPI_INFO_GET_ENV that contains a number of run-time related pieces of info. This includes all the required ones in the ticket, plus a few that specifically address recent user questions:
"num_app_ctx" - the number of app_contexts in the job
"first_rank" - the MPI rank of the first process in each app_context
"np" - the number of procs in each app_context

Still need clarification on the MPI_Init portion of the ticket. Specifically, does the ticket call for returning an error is someone calls MPI_Init more than once in a program? We set a flag to tell us that we have been initialized, but currently never check it.

This commit was SVN r27005.
2012-08-12 01:28:23 +00:00
Samuel Gutierrez
6188d97e1a Getting out of bed this morning was a bad idea... Reverting the sm update once more because it breaks direct launch. Will address this issue and commit the update once it has all been tested. Sorry everyone!
This commit was SVN r27001.
2012-08-10 22:20:38 +00:00
Jeff Squyres
7b0af8a760 Fix bad copyright comment
This commit was SVN r26999.
2012-08-10 21:53:17 +00:00
Jeff Squyres
7390ab8a23 Many updates and bug fixes for the Fortran bindings. Sorry these
aren't separated out into individual commits; they represent a few
months of work in the Mercurial branch, and it seemed error-prone to
try to break them up into multiple SVN commits.

 * Remove 2nd overloaded interfaces for MPI_TESTALL, MPI_TESTSOME,
   MPI_WAITALL, and MPI_WAITSOME in the "mpi" module implementations
   (because we're not allowed to have them, anyway -- it causes
   complications in the profiling interface).  This forced an MPI-2.2
   errata in the MPI Forum; we applied the errata here (the array of
   statuses parameter could not have a specific dimension specified in
   the dummy argument).  Fixes trac:3166.
 * Similarly, fix type for MPI_ARGVS_NULL in Fortran
 * Add MPI_3.0 function MPI_F_SYNC_REG (Fortran interfaces only).
 * Add MPI-3.0 MPI_MESSAGE_NO_PROC in the mpi_f08 module.
 * Added mpi_f08 handle comparison operators, per MPI-3.0 addendum to
   the F08 proposal at the last Forum meeting.  
 * Added missing type(MPI_File) and type(Message) in mpi_f08 module.
 * Fix --disable-mpi-io configure switch with all Fortran interfaces
 * Re-factor the Fortran header files to be fundamentally simpler and
   easier to maintain.  Fortran constant values in the header files
   are now generated by a script named mpif-values.pl during
   autogen.pl (they were previously generated by mpif-common.pl, but
   it was quite a bit more subtle/complex).  A second commit will
   follow this one to update svn:ignore values (just to ensure we
   don't muck up the first commit with the SVN client getting confused
   by the changed ignore values and new/changed files).
 * Fix some dependencies for compile ordering in
   ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.am. 
 * Fix bad wording in several places (.m4 file name, ompi_info output,
   etc.): we previoulsy said "F08 assumed shape" when we really meant
   "F08 assumed rank" (for Fortran gurus, those are very different
   things). 
 * Removed the GREEK/SVN version string from mpif.h.  It really had no
   purpose being there.

Still to be done:

 * Handling of 2D array of strings in MPI_COMM_SPAWN_MULTIPLE still
   isn't right yet.  Not sure how many people really care about this
   :-), but it is still broken.

This commit was SVN r26997.

The following Trac tickets were found above:
  Ticket 3166 --> https://svn.open-mpi.org/trac/ompi/ticket/3166
2012-08-10 21:19:47 +00:00
Samuel Gutierrez
159bd2e62e Let's try this again: sm BTL initialization via modex.
This commit was SVN r26989.
2012-08-10 20:12:36 +00:00
Samuel Gutierrez
6a70063812 Yikes - that's not right! Back out 26987. I'll try again in a bit... Sorry!
This commit was SVN r26988.
2012-08-10 19:57:51 +00:00
Samuel Gutierrez
2c80273246 sm BTL initialization via modex.
This commit was SVN r26987.
2012-08-10 19:51:41 +00:00
Jeff Squyres
c339131b1e Do NOT remove all the source files in "make distclean" -- that's a
holdover from when these files were generated.

This commit was SVN r26982.
2012-08-10 02:04:50 +00:00
Jeff Squyres
555c09f568 Also add -g to FCFLAGS if --enable-debug is specified
This commit was SVN r26980.
2012-08-10 01:57:46 +00:00
Yael Dayan
79e6b9c91d Adapt OMPI to use newer version of MXM.
This commit was SVN r26974.
2012-08-08 15:29:38 +00:00
Yael Dayan
954bcdc0a5 adapt the way to find amount of local processes to OMPI trunk.
This commit was SVN r26973.
2012-08-08 15:26:28 +00:00
Jeff Squyres
2f136023f0 Some Fortran fixes to r26967.
This commit was SVN r26968.

The following SVN revision numbers were found above:
  r26967 --> open-mpi/ompi@083938cc10
2012-08-08 13:46:15 +00:00
George Bosilca
083938cc10 It is now almost impossible to add a new function to the MPI interface
without messing the Fortran part.

This commit was SVN r26967.
2012-08-08 13:17:57 +00:00
George Bosilca
6c39d16319 It is not redundant once the typo is corrected.
This commit was SVN r26965.
2012-08-08 11:28:36 +00:00
Jeff Squyres
7af34b1557 Remove redundant parameter declaration for MPI_COMBINER_INDEXED_BLOCK
This commit was SVN r26964.
2012-08-08 11:20:35 +00:00
Jeff Squyres
da219e6ab6 Remove the use of mpi_f08_interfaces -- it shouldn't be there.
Thanks to Nathan for spotting this.

This commit was SVN r26963.
2012-08-07 20:04:01 +00:00
George Bosilca
113b45b4e6 Add support for the new MPI_Type_create_hindexed_block (MPI 3.0).
This commit was SVN r26962.
2012-08-07 12:48:30 +00:00
George Bosilca
3e288aaef6 Indentation.
This commit was SVN r26961.
2012-08-07 12:46:47 +00:00
Shiqing Fan
2f442799f8 fix several typecasts
This commit was SVN r26957.
2012-08-07 10:41:53 +00:00
Yael Dayan
7895cd1114 adding a fragmentation mechanism to the Get flow in function mca_pml_ob1_recv_request_progress_rget
This commit was SVN r26956.
2012-08-07 07:15:21 +00:00
Vasily Filipov
fc712182db MTL MXM: make MXM use MXM_VERSION macro for MXM version checking.
This commit was SVN r26952.
2012-08-06 06:35:57 +00:00
Ralph Castain
89f3754559 Bring in the rest of MPI-3 Ticket #125 changes, including changes to mpi.h, function param lists, and associated documentation.
This commit was SVN r26944.
2012-08-03 01:09:59 +00:00
Ralph Castain
bf701f6c55 Make PMPI match MPI defs
This commit was SVN r26942.
2012-08-02 16:58:04 +00:00
Ralph Castain
8b595ddf84 Complete changes specified in MPI-3 Ticket #125. Still holding on proposed change to MPI_Init as it remains under discussion (and is just plain uuuugly). No action taken on changing string arrays as that part of #125 was not included in the final pdf text.
This commit was SVN r26939.
2012-08-02 16:31:02 +00:00
Ralph Castain
05845214b8 Add missing include file
This commit was SVN r26934.
2012-08-01 04:08:47 +00:00
Matthias Jurenz
79a065290c Changes to OTF:
- general:
		- incremented version number to 1.11.2openmpi
	- lib OTFAUX:
		- speed-up messages matching, if no snapshots should be generated

Changes to VT:
	- general:
		- incremented version number to 5.13.1openmpi
	- compiler wrappers:
		- vtnvcc:
			- add path to cuda.h to the PDT parser command
			- exclude *.cu source files from instrumenting with PDT/TAU; the PDT parser is not (yet) able to handle CUDA statements and kernels
	- vtunify:
		- fixed timestamp boundary check for merging asynchronous plugin counters (i.e. async. timestamp must >= process' start timestamp)
		- fixed timestamp conversion from local to global
		- print percentage of message matching bumps (unmatched or reversed messages)
		- inlined key-value list "record handler"
		- minor optimizations in hook for merging async. events:
			- search async. source manager only once per stream
			- don't call writeRecHook_Event() if no async. source key is defined

This commit was SVN r26925.
2012-07-31 08:45:37 +00:00
Vasily Filipov
c386847d9a MTL MXM: Adding MXM version protect for Mprobe, Mrecv resources.
This commit was SVN r26922.
2012-07-31 07:57:25 +00:00
Vishwanath Venkatesan
dccfd18481 1. Removing two-phase support functions
2. Moving nbc headers to a seperate header file and modifying
io_ompio_nbc.c accordingly.

This commit was SVN r26921.
2012-07-31 04:39:13 +00:00
Vishwanath Venkatesan
539571171b Moving support functions of two-phase to the two_phase component.
This commit was SVN r26920.
2012-07-31 04:37:04 +00:00
Edgar Gabriel
fb64322dc3 this code section was supposed to be commented out...
This commit was SVN r26918.
2012-07-30 20:46:07 +00:00
Edgar Gabriel
1078f13ad2 set status->_ucount correctly for collective read and write operations in the module
This commit was SVN r26916.
2012-07-30 20:14:36 +00:00
Edgar Gabriel
91c8577d9d fix in the offset calculation for explicit offset operations.
This commit was SVN r26915.
2012-07-30 20:08:00 +00:00
Edgar Gabriel
81a050add9 simplify the individual fcoll module by just calling the
mca_io_ompio_file_read/write functions directly. Avoid replicating the code in 
both places.

This commit was SVN r26909.
2012-07-30 15:44:22 +00:00
Edgar Gabriel
66c5a80dfd - get rid of a warning about an unused variable
- return MPI_ERR_OTHER instead of MPI_SUCCESS for the functions that are not
  yet implemented 
- add another field to the mca_io_ompio_file_t structure to point back to the
  ompi_file_t structure.

This commit was SVN r26908.
2012-07-30 15:29:59 +00:00
Jeff Squyres
9f8265eccb The files for automake to generate are specified via AC_CONFIG_FILES
in the */configure.m4 files.  configure.params files are obsolete.

This commit was SVN r26897.
2012-07-27 14:33:17 +00:00
Shiqing Fan
42dfbc7d2f Another CMake scripts update for:
correctly generate hwloc library
automatically define OMPI/OPAL/ORTE_OMPORTS for user applications
update the f77 bindings

This commit was SVN r26893.
2012-07-27 11:49:09 +00:00
Yevgeny Kliteynik
a6458da4ba Using 8K as a minimal CQ length
- For now we'll use 8192 as a base value
 - We leave the adjust_cq() as is
 - For the long term we can work on an appropriate setting to expose through the INI file.

8K CQEs are 512K per process, which is 8MB for ppn=16

This commit was SVN r26877.
2012-07-26 21:06:18 +00:00
Nathan Hjelm
8736953c7f btl/openib/connect improve the help message printed when a queue pair can not be created
This commit was SVN r26876.
2012-07-26 20:36:46 +00:00
Shiqing Fan
204fbfe4b1 update the wv btl component.
This commit was SVN r26872.
2012-07-26 15:35:01 +00:00
George Bosilca
3a8478827b Fix the MPI_Cancel issue identified by Fujitsu. And a typo.
This commit was SVN r26871.
2012-07-26 14:06:24 +00:00
Vasily Filipov
4e66ff030b MTL MXM Mrecv: adding missed return message to a free list.
This commit was SVN r26870.
2012-07-26 11:22:22 +00:00
Nathan Hjelm
fe0e7f81df btl/openib: as discussed remove the per-peer queue pair from the default configuration
This commit was SVN r26869.
2012-07-25 22:53:58 +00:00
Jeff Squyres
5ec6a65a72 After I spent a while looking in libibverbs for
ibv_get_device_list_compat() and not finding it, I finally realized
that it was a function in OMPI.  So let's name it with a proper ompi_
prefix, not an ibv_ prefix.

This commit was SVN r26867.
2012-07-25 16:32:51 +00:00
Vasily Filipov
ef9bd8e4cb MTL MXM: MPI_Mprobe, MPI_Mrecv implementation for MXM adding.
This commit was SVN r26866.
2012-07-25 13:26:40 +00:00
George Bosilca
118e30a2ac Typo.
This commit was SVN r26865.
2012-07-25 12:42:31 +00:00
George Bosilca
b6f4bc9656 size_t not int everywhere. Correctly compute with size_t (don't initialize
it to a negative number). Get rid of the multiplication in the critical
path, and keep the functions as simple as possible.

This commit was SVN r26864.
2012-07-25 12:41:53 +00:00
Yael Dayan
8cad1d6481 while working on a fix for the Get flow in pml, I've encountered a problem in "mca_pml_ob1_compute_segment_length" function, at pml_ob1.h file.
The return value from this function was truncated from size_t to int. This fix changes the return value to type size_t.

This commit was SVN r26863.
2012-07-25 12:08:41 +00:00
George Bosilca
b0e2dc7ae3 Fix the darray issue where the UB was not computed correctly. The
old version of the code tried to use the MPI_UB marker, but this
failed if the old marker (the one set in the cyclic function) had
a larger value. Replace the hardcore markers MPI_LB and MPI_UB by
their softer counterparts (using the _resize function).

This commit was SVN r26862.
2012-07-24 22:24:54 +00:00
Jeff Squyres
9cb3f31b50 Odd; this compiled on OS X without needing #include "opal_stdint.h".
Linux appears to need it.  Shrug.

This commit was SVN r26858.
2012-07-24 13:47:24 +00:00