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Граф коммитов

87 Коммитов

Автор SHA1 Сообщение Дата
Joshua Hursey
e1d079544b mca: Dynamic components link against project lib
* Resolves #3705
 * Components should link against the project level library to better
   support `dlopen` with `RTLD_LOCAL`.
 * Extend the `mca_FRAMEWORK_COMPONENT_la_LIBADD` in the `Makefile.am`
   with the appropriate project level library:
```
MCA components in ompi/
       $(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la
MCA components in orte/
       $(top_builddir)/orte/lib@ORTE_LIB_PREFIX@open-rte.la
MCA components in opal/
       $(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la
MCA components in oshmem/
       $(top_builddir)/oshmem/liboshmem.la"
```

Note: The changes in this commit were automated by the script in
the commit that proceeds it with the `libadd_mca_comp_update.py`
script. Some components were not included in this change because
they are statically built only.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-08-24 11:56:16 -04:00
Alex Mikheev
1b5df76f8b
oshmem: shmem_ptr() implementation
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2017-08-03 13:56:34 +03:00
Alex Mikheev
ea3ea4835b oshmem: mem use hook: apply code review fixes
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
(cherry picked from commit a422154a141f0be5b92d2b6c26d7b2b4176dfe18)
2017-01-30 11:30:20 +02:00
Alex Mikheev
986ca000f8
oshmem: spml: add memory allocation hook
The hook is called from memheap when memory range
is going to be allocated by smalloc(), realloc() and others.

ucx spml uses this hook to call ucp_mem_advise in order to speedup
non blocking memory mapping.

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2017-01-26 16:41:39 +02:00
Alex Mikheev
83c2ab76a5
oshmem: memheap: refactor component selection code
Do not call component's init function until the component has been
selected.

Use mca_base_select() instead of the custom component selection code.

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2017-01-16 13:48:58 +02:00
Alex Mikheev
d1723355d3
oshmem: memheap: removes find_offset
Reasons for removal are:
- the function is only used by the shmem_lock code
- only a subset of the function is used by the shmem_lock
- for the general case the function is not correct

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2016-11-21 16:09:17 +02:00
Gilles Gouaillardet
19bdd1d626 oshmem/memheap: initialize common symbol mca_memheap_base_map
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-11-21 09:32:27 +09:00
Alex Mikheev
bf61961f8b
oshmem: code review fixes
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2016-11-08 15:11:59 +02:00
Alex Mikheev
ff5095e533 OSHMEM: adds support for mkey caching by spml
It improves cpu cache hit ratio.

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2016-11-06 11:56:43 +02:00
Alex Mikheev
61bd59a369 OSHMEM: fixes addr_acessible()
check every possible transport

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2016-11-06 11:56:41 +02:00
Alex Mikheev
b5c7c7de78 OSHMEM: memheap: disable oob if allgather mkey exchange is used
In this case there is no point to add another progress callback

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2016-11-06 11:56:39 +02:00
Joshua Hursey
f6f24a4f67 build: Custom libmpi(_FOO) name option in configure
* Add a configure time option to rename libmpi(_FOO).*
   - `--with-libmpi-name=STRING`
 * This commit only impacts the installed libraries.
   Internal, temporary libraries have not been renamed to limit the
   scope of the patch to only what is needed.

For example:
```shell
shell$ ./configure --with-libmpi-name=wookie
...
shell$ find . -name "libmpi*"
shell$ find . -name "libwookie*"
./lib/libwookie.so.0.0.0
./lib/libwookie.so.0
./lib/libwookie.so
./lib/libwookie.la
./lib/libwookie_mpifh.so.0.0.0
./lib/libwookie_mpifh.so.0
./lib/libwookie_mpifh.so
./lib/libwookie_mpifh.la
./lib/libwookie_usempi.so.0.0.0
./lib/libwookie_usempi.so.0
./lib/libwookie_usempi.so
./lib/libwookie_usempi.la
shell$
```
2016-09-29 21:47:24 -05:00
Gilles Gouaillardet
0a25420dac oshmem: get rid of oshmem_proc_t and use ompi_proc_t instead
store oshmem related per proc data in an oshmem_proc_data_t struct,
that is stored in the padding section of an ompi_proc_t

this data can be accessed via the OSHMEM_PROC_DATA(proc) macro

Fixes open-mpi/ompi#2023
2016-09-01 14:20:14 +09:00
Igor Ivanov
a8ab5b55b9 oshmem: Fix double lock issue
Signed-off-by: Igor Ivanov <igor.ivanov.va@gmail.com>
2016-06-10 15:52:31 +03:00
Igor Ivanov
5c061abf4e oshmem: Fix scan coverity issues
1324740 - Resource leak
1304562 - Unchecked return value
1340514 - Dereference before null check
1340515 - Use of untrusted scalar value
1340516 - Use of untrusted string value
2015-12-02 12:49:19 +02:00
Igor Ivanov
05d947d55a oshmem: Align OSHMEM API with spec v1.2 (support environment variables) 2015-11-24 18:57:56 +02:00
Igor Ivanov
c0518c0417 oshmem: Enable force output for error messages
This change fixes issue when oshmem related error messages are not
visible for an user.
2015-11-11 13:26:10 +02:00
Ralph Castain
e1778f5f9b Revert " changing the destruct function of list release API to release list items"
This reverts commit 720fa860ee.
2015-10-27 15:24:45 -07:00
rhc54
0bc51375f3 Merge pull request #1004 from rppendya/rppendya_list_release
Releasing the list items when list destructor is called
2015-10-21 14:34:19 -07:00
Raghavendra Pendyala
720fa860ee changing the destruct function of list release API to release list items
caused a bug in oshmem application. Fixing the bug with this patch
2015-10-20 12:58:23 -07:00
Alex Mikheev
b020b628fc oshmem/memheap: optimized mkey lookup.
Fast path lookup is done in inline funcion.
2015-10-20 19:45:51 +03:00
yosefe
bd3f4c8cc7 spml/memheap: add support for mkey unpack. 2015-10-20 19:45:50 +03:00
Gilles Gouaillardet
291a464efb configury: remove the --enable-mpi-profiling option
and directly call the PMPI_* symbols from C and Fortran bindings
2015-10-13 08:52:35 +09:00
Gilles Gouaillardet
53b952dc2b oshmem: invoke the C PMPI_* subroutines instead of the MPI_* ones
when profiling is built.
This prevents oshmem subroutines from being wrapped twice by third
party tools (e.g. once in oshmem and once in MPI)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php

Thanks to Bert Wesarg for bringing this to our attention
2015-10-13 08:52:03 +09:00
Nathan Hjelm
69b9bc2269 oshmem/memheap: correct usage of opal_dss functions
Any buffer given to opal_dss.load becomes the responsibility of the
opal_buffer_t object. It will be freed automatically if either the
opal_buffer_t is released or opal_dss.load is called again on the
buffer. opal_dss.unload will not prevent this unless no unpacking
takes place between the .load and .unload calls.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-14 13:54:56 -06:00
Ralph Castain
cf6137b530 Integrate PMIx 1.0 with OMPI.
Bring Slurm PMI-1 component online
Bring the s2 component online

Little cleanup - let the various PMIx modules set the process name during init, and then just raise it up to the ORTE level. Required as the different PMI environments all pass the jobid in different ways.

Bring the OMPI pubsub/pmi component online

Get comm_spawn working again

Ensure we always provide a cpuset, even if it is NULL

pmix/cray: adjust cray pmix component for pmix

Make changes so cray pmix can work within the integrated
ompi/pmix framework.

Bring singletons back online. Implement the comm_spawn operation using pmix - not tested yet

Cleanup comm_spawn - procs now starting, error in connect_accept

Complete integration
2015-08-29 16:04:10 -07:00
Jeff Squyres
5065978a1e oshmem: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Gilles Gouaillardet
11e11e1be9 initialize common symbols from oshmem 2015-05-08 10:11:58 +09:00
Nathan Hjelm
c4a61969c0 oshmem: use C99 subobject naming for component initialization
This commit helps future-proof oshmem components by initializing each
component member by name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-04-18 10:29:58 -06:00
Nathan Hjelm
b68d66bb9b MCA: Add the project/project version to the MCA base component
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.

All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:04 -06:00
Igor Ivanov
010dce307a Fix set of coverity issues
List of CIDs (scan.coverity.com):
oshmem:
1269787, 1269907, 1270161, 1270162, 1270977, 1270978
ompi:
1270170, 1270172, 1270173

Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
2015-02-20 17:45:46 +04:00
Igor Ivanov
426d1ce146 oshmem: Fix set of coverity issues
List of CIDs (scan.coverity.com):
1269721, 1269725, 1269787, 1269907, 1269909, 1269910, 1269911, 1269912,
1269959, 1269960, 1269984, 1269985, 1270136, 1270157, 1269845, 1269875,
1269876, 1269877, 1269878, 1269884, 1269885, 1270161, 1270162, 1270175,
1269734, 1269739, 1269742, 1269743

Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
2015-02-19 23:00:17 +04:00
Mike Dubman
6611f4ce38 OSHMEM: fix warnings 2015-02-09 20:49:03 -08:00
Mike Dubman
54a072caaa OSHMEM: fix infinite recursion and stack size violation
send reply before posting the receive request again to limit the recursion size to
number of receive requests.
send can call opal_progress which calls this function again. If recv req is started
stack size will be proportional to number of job ranks.
2015-01-04 16:31:19 +02:00
Nadezhda Kogteva
3e7002e8aa oshmem mmap: copyrights for memheap_base_alloc.c files updated 2014-10-13 11:41:35 +03:00
Nadezhda Kogteva
ce4ee2aa8d oshmem mmap: new mca parameters were introduced - sshmem_mmap_anonymous, sshmem_mmap_fixed and sshmem_base_backing_file_dir - for runtime mmap management.
(cherry picked up from Mellanox-v1.8 repo commit 4c391a)
2014-10-13 11:39:26 +03:00
Alex Mikheev
067fa05209 OSHMEM: fixes bug in shmem_lock
Lock server pe computation was incorrect in cases when:

lock virtual address is signed long. In this case negative pe
value was returned.

In case when lock has different virtual adresses on different pes.
It can happen when memheap or static segment have different base
addresses. Use offset instead of absolute virtual address to
compute server pe

Fixed by @alex-mikheev, reviewed by @miked-mellanox
2014-10-05 09:31:03 +03:00
Ralph Castain
552c9ca5a0 George did the work and deserves all the credit for it. Ralph did the merge, and deserves whatever blame results from errors in it :-)
WHAT:    Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL

All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies.  This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP.  Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose.  UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs.  A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.

This commit was SVN r32317.
2014-07-26 00:47:28 +00:00
Mike Dubman
0c2aa8abcd OSHMEM: Set SMA_SYMMETRIC_SIZE to default value
OpenSHMEMspec 1.1 introduces a set of environment variables that allows users to configure the Open-SHMEM implementation, and receive information about the implementation.
- Add SMA_SYMMETRIC_SIZE - number of bytes to allocate for symmetric heap
- SHMEM_SYMMETRIC_HEAP_SIZE (Mellanox extension) is used by a user to provide a size of symmetric area. This change sets this env variable in case a user does not set this variable
  directly.

fixed by Igor, reviewed by Miked

cmr=v1.8.2:reviwer=ompi-rm1.8

This commit was SVN r32257.
2014-07-17 17:53:15 +00:00
Mike Dubman
8d906b12f2 oshmem: fix warnings
fixed by Igor, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32217.
2014-07-11 13:25:09 +00:00
Alex Mikheev
0dfd321b59 OSHMEM: fixes error handling in memheap
Memory registration is aborted on first failure.
Already registered memory is freed and
correct error code is returned.

Memory deregistration always suceeeds 

reviewed by miked
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32175.
2014-07-09 09:26:25 +00:00
Alex Mikheev
c3e017c190 OSHMEM: refactoring of fix wrong btl/sm processing
Use exising fields of mkey struct to identify 'shared memory'
segments.

mkey.u.key is now always initialized to MAP_SEGMENT_SHM_INVALID instead
of 0

reviewed by Mike and Igor
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32174.
2014-07-09 08:57:27 +00:00
Gilles Gouaillardet
3743c27c7a Handle error case in mca_spml_yoda_register
this commit fixes error propagation in :
 - mca_memheap_base_reg
 - mca_memheap_base_dereg

cmr=v1.8.2:reviewer=amikheev:ticket=4747

This commit was SVN r32173.

The following Trac tickets were found above:
  Ticket 4747 --> https://svn.open-mpi.org/trac/ompi/ticket/4747
2014-07-09 07:19:25 +00:00
Mike Dubman
247da2819f OSHMEM: fix wrong btl/sm processing and typo
fixed by Igor reviewed by Alex,Mike,Yossi

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32100.
2014-06-28 18:40:28 +00:00
Mike Dubman
5a06f5dff5 OSHMEM: fix bss check
fixed by AlexM reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32099.
2014-06-28 18:37:45 +00:00
Alex Mikheev
3b5fa97790 OSHMEM: fixes problem with local heap2heap copy
check for possibility of heap2heap copy was incorrect
in case when shared heaps have different virtual
addresses on same host.

It seems that ibv_exp_reg_mr() on CIB cards may return
different VAs for heap on same node. On CX3 addresses are
the same.

reviewed by miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31969.
2014-06-09 09:41:44 +00:00
Mike Dubman
95e637f5ba OSHMEM: fix error message when aborting on OOM
fixed by Roman, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31752.
2014-05-14 13:45:16 +00:00
Ralph Castain
5602156a1c Use the correct abstraction layer name for the data dirs
This commit was SVN r31684.
2014-05-08 14:32:24 +00:00
Ralph Castain
11faab1091 The final step of the RFC: convert the <foo>libdir and friends to fit their respective code areas, and equate them all at the top. Note that we can't entirely separate things as the opal_install_dirs framework can't handle separated locations for the various trees.
This commit was SVN r31679.
2014-05-08 02:01:35 +00:00