ports/openmpi
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Ralph Castain
317915225c Finish the binding cleanup by removing the no-longer-used binding level scheme. This proved to be fallible as there is no guarantee that the hierarchy it used matched physical reality of the machine (e.g., is L3 "above" the socket or not). Still have to complete the ppr update, but get the rest of it correct. 
This commit was SVN r28223.
 2013-03-26 20:09:49 +00:00
Ralph Castain
24b91839aa Ensure the process knows it local cpuset early enough to perform the locality computation 
This commit was SVN r28221.
 2013-03-26 19:14:23 +00:00
Ralph Castain
6ee32767d4 Restore the cpus-per-proc option for byslot and bynode mapping. Remove the bind_idx (which recorded the index of the hwloc object where the proc was bound) as this would no longer be unique, and just use the bitmap as the standard reference for location. Update the relative locality computation to take bitmaps as its argument. 
This commit was SVN r28219.
 2013-03-26 18:27:50 +00:00
Ralph Castain
2f43989d22 Add debug and handle the use-case where someone (a) uses a hostfile while in a managed allocation to sub-allocate runs, and (b) includes the HNP's node in one of those hostfiles. 
cmr:v1.7

This commit was SVN r28203.
 2013-03-22 00:53:33 +00:00
Jeff Squyres
63d17ce901 Fix CID 968581: ensure that the string read from the socket is always 
\0-terminated so that strlen() and strstr() can be used without fear.
Also fix some insignificant mem leaks (which is somewhat moot, because
as soon as we leave those error conditions, the process will be
terminating, but what the heck, might as well fix these while I was in
the file for the \0-termination issue...).

This commit was SVN r28199.
 2013-03-21 16:05:50 +00:00
Jeff Squyres
562db0dd11 Fix CID 741328: remove some dead code 
This commit was SVN r28192.
 2013-03-21 11:15:06 +00:00
Ralph Castain
fa13d27238 Avoid double-release in error path 
This commit was SVN r28190.
 2013-03-20 21:00:59 +00:00
Ralph Castain
147c6ff9e7 Clean out the cruft leftover from the use_common_ports experiment 
cmr:v1.7

This commit was SVN r28184.
 2013-03-20 15:07:43 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration 
This commit was SVN r28137.
 2013-02-28 17:31:47 +00:00
Ralph Castain
cf9796accd Remove the old configure option for disabling full rte support - we now use the OMPI rte framework for such purposes 
This commit was SVN r28134.
 2013-02-28 01:35:55 +00:00
Ralph Castain
347df93cd4 Handle the case of someone specifying a directory for the application. Ensure we get a non-zero exit status and clarify the error message. 
cmr:v1.7

This commit was SVN r28119.
 2013-02-27 01:36:21 +00:00
Ralph Castain
f36312ee6f Continue cleanup - this time, start working on the "without full support" flags in ORTE. Remove no-longer-needed configure.m4 files from the ess and errmgr. In the former case, since all priorities are now the same (given the removal of the cnos component), configure priorities are no longer required. 
This commit was SVN r28118.
 2013-02-26 21:27:48 +00:00
Ralph Castain
74a3ece313 Remove unused component 
This commit was SVN r28117.
 2013-02-26 20:58:43 +00:00
Ralph Castain
8d2fa3693b First cut at removing the native Windows support. Remove all the Windows-specific components, and the .windows files sprinkled around. Remove the Windows platform files and MTT scripts. Update the NEWS to point Windows users to the cygwin package. 
This commit was SVN r28116.
 2013-02-26 20:44:56 +00:00
Ralph Castain
bd9265c560 Per the meeting on moving the BTLs to OPAL, move the ORTE database "db" framework to OPAL so the relocated BTLs can access it. Because the data is indexed by process, this requires that we define a new "opal_identifier_t" that corresponds to the orte_process_name_t struct. In order to support multiple run-times, this is defined in opal/mca/db/db_types.h as a uint64_t without identifying the meaning of any part of that data. 
A few changes were required to support this move:

1. the PMI component used to identify rte-related data (e.g., host name, bind level) and package them as a unit to reduce the number of PMI keys. This code was moved up to the ORTE layer as the OPAL layer has no understanding of these concepts. In addition, the component locally stored data based on process jobid/vpid - this could no longer be supported (see below for the solution).

2. the hash component was updated to use the new opal_identifier_t instead of orte_process_name_t as its index for storing data in the hash tables. Previously, we did a hash on the vpid and stored the data in a 32-bit hash table. In the revised system, we don't see a separate "vpid" field - we only have a 64-bit opaque value. The orte_process_name_t hash turned out to do nothing useful, so we now store the data in a 64-bit hash table. Preliminary tests didn't show any identifiable change in behavior or performance, but we'll have to see if a move back to the 32-bit table is required at some later time.

3. the db framework was a "select one" system. However, since the PMI component could no longer use its internal storage system, the framework has now been changed to a "select many" mode of operation. This allows the hash component to handle all internal storage, while the PMI component only handles pushing/pulling things from the PMI system. This was something we had planned for some time - when fetching data, we first check internal storage to see if we already have it, and then automatically go to the global system to look for it if we don't. Accordingly, the framework was provided with a custom query function used during "select" that lets you seperately specify the "store" and "fetch" ordering.

4. the ORTE grpcomm and ess/pmi components, and the nidmap code,  were updated to work with the new db framework and to specify internal/global storage options.

No changes were made to the MPI layer, except for modifying the ORTE component of the OMPI/rte framework to support the new db framework.

This commit was SVN r28112.
 2013-02-26 17:50:04 +00:00
Ralph Castain
c0b670bea8 I guess some profiling tools and debuggers require that the argv[0] of each rank be unique so they can create a filename based on that value. For those obscure cases, provide an mpirun cmd line option that indexes each argv[0] by rank 
This commit was SVN r28064.
 2013-02-15 20:20:49 +00:00
Ralph Castain
b9897267ef Cleanup report-bindings so it always reports the actual binding instead of what was requested. Ensure we don't report twice if it is an MPI process being launched. 
This commit was SVN r28057.
 2013-02-14 17:24:28 +00:00
Ralph Castain
744ed49b2d Begin cleanup of the thread_lock calls in ORTE. We'll ignore the ones in the rml/oob for now as that code block is being rewritten anyway. 
This commit was SVN r28053.
 2013-02-13 01:53:12 +00:00
Ralph Castain
b360156a37 Extend print coverage to all types 
This commit was SVN r28012.
 2013-02-01 14:21:06 +00:00
Ralph Castain
53e0ed71b0 Disqualify slurm module even if slurm support was configured into the build if we don't have an allocation and haven't enabled dynamic allocations 
This commit was SVN r27995.
 2013-01-31 18:15:47 +00:00
Ralph Castain
166f512924 Add some useful debug to the heartbeat sensor 
This commit was SVN r27994.
 2013-01-31 18:01:13 +00:00
Ralph Castain
ca9605773b If sensors are enabled, then the daemons need to have their proc->node field linked to their local node object 
This commit was SVN r27991.
 2013-01-31 16:38:57 +00:00
Ralph Castain
c87fa68f9b Cleanup the resource usage sensor, letting the db handle any printing requests. 
This commit was SVN r27990.
 2013-01-31 15:20:56 +00:00
Ralph Castain
9625757a71 Add new database component for printing "add_log" info 
This commit was SVN r27989.
 2013-01-31 15:19:39 +00:00
Ralph Castain
8e8e95ca6b Silence error report - just because someone only defines ipv4 static ports doesn't make a fatal error 
This commit was SVN r27976.
 2013-01-29 23:48:22 +00:00
Jeff Squyres
8e25b927ab Clean some minor warnings: remove variables that were set but never 
used.

This commit was SVN r27974.
 2013-01-29 23:35:42 +00:00
Ralph Castain
112f8eedb1 Handle the case where rankfile is providing the allocation 
This commit was SVN r27971.
 2013-01-29 20:37:58 +00:00
Nathan Hjelm
666bd826dc fix alps configury 
This commit was SVN r27962.
 2013-01-29 15:44:30 +00:00
Brian Barrett
b8442ba505 Revamp the handling of wrapper compiler flags. The user flags, main configure 
flags, and mca flags are kept seperate until the very end.  The main configure
wrapper flags should now be modified by using the OPAL_WRAPPER_FLAGS_ADD
macro.  MCA components should either let <framework>_<component>_{LIBS,LDFLAGS}
be copied over OR set <framework>_<component>_WRAPPER_EXTRA_{LIBS,LDFLAGS}.
The situations in which WRAPPER CPPFLAGS can be set by MCA components was
made very small to match the one use case where it makes sense.

This commit was SVN r27950.
 2013-01-29 00:00:43 +00:00
Ralph Castain
cfaefb3286 Remove the only place where PMI was used outside a component, and relocate that code to common/pmi. 
This commit was SVN r27944.
 2013-01-28 20:14:51 +00:00
Brian Barrett
f42783ae1a Move the RTE framework change into the trunk. With this change, all non-CR 
runtime code goes through one of the rte, dpm, or pubsub frameworks.

This commit was SVN r27934.
 2013-01-27 23:25:10 +00:00
Ralph Castain
6eaf601ae6 Good ol' Cray changed the way node/cpu allocation is handled in their latest release of ALPS, and so our allocator is broken. Adjust for the revised method, but preserve the older method for those Cray users who have not updated their system. 
cmr:v1.7

This commit was SVN r27911.
 2013-01-25 21:53:31 +00:00
Ralph Castain
f6b4db0b79 Fix rank_file operations. We changed the syntax to use semi-colons between multiple slot assignments so that we could use the comma to separate specific cores, but somehow the flex definitions didn't get updated to accept that character. We also incorrectly zero'd the bitmap between slot assignment sections, and so multiple slot assignments only wound up making the last one in the list. 
This commit was SVN r27908.
 2013-01-25 18:33:25 +00:00
Ralph Castain
2504da1ac9 Remove stale code - message arrival time doesn't really mean much anymore. 
This commit was SVN r27905.
 2013-01-24 23:02:02 +00:00
Ralph Castain
9bfb2b989b Silence warning 
This commit was SVN r27901.
 2013-01-24 19:38:51 +00:00
Ralph Castain
4b310473a1 Correct the computation of the daemon vpid 
cmr:v1.7

This commit was SVN r27899.
 2013-01-24 18:04:53 +00:00
Ralph Castain
b403ca5bd8 Silence warning 
This commit was SVN r27897.
 2013-01-23 22:17:08 +00:00
Ralph Castain
4d34d30a97 Silence warning 
This commit was SVN r27896.
 2013-01-23 22:16:48 +00:00
Ralph Castain
a591fbf06f Add initial support for dynamic allocations. At this time, only Slurm supports the new capability, which will be included in an upcoming release. 
Add hooks for supporting dynamic allocation and deallocation to support application-driven requests and fault recovery operations.

This commit was SVN r27879.
 2013-01-20 00:33:42 +00:00
Ralph Castain
e4673f3283 Add new job state 
This commit was SVN r27878.
 2013-01-20 00:30:27 +00:00
Ralph Castain
73387e50e2 Add missing variable def - thanks to Paul Hargrove for spotting. 
This commit was SVN r27865.
 2013-01-18 14:32:53 +00:00
Ralph Castain
54266837e9 Remove use of param_find function as that function will be disappearing 
This commit was SVN r27831.
 2013-01-15 19:50:38 +00:00
Ralph Castain
aea6787918 Add new routed component with self-healing connections - based on radix component - for use in monitoring system 
This commit was SVN r27757.
 2013-01-08 04:40:35 +00:00
Ralph Castain
c9a596b487 Remove unused var 
This commit was SVN r27756.
 2013-01-08 04:39:30 +00:00
Ralph Castain
beddf3b379 Add required rml tag 
This commit was SVN r27751.
 2013-01-05 06:32:20 +00:00
Ralph Castain
bee8bf5d8f Update the sensor framework to report stats back to the HNP if requested by including the data in heartbeats. 
This commit was SVN r27748.
 2013-01-05 06:30:20 +00:00
Ralph Castain
c71e119bbb Extend the db framework to add support for logging data to databases without duplicating all the modex-related storage. 
This commit was SVN r27746.
 2013-01-05 06:28:09 +00:00
George Bosilca
34eecb8956 Be more explicit about the operation (store or update). complain loudly 
if something goes wrong.

This commit was SVN r27743.
 2013-01-04 20:47:25 +00:00
Ralph Castain
cc29f8ff95 Attempt to fix the stupid Cray PMI problem 
This commit was SVN r27742.
 2013-01-04 02:53:42 +00:00
Nathan Hjelm
6a9ab9b221 Change orte_startup_timeout to be in seconds and remove the 10 second maximum 
This commit was SVN r27741.
 2013-01-03 23:56:34 +00:00