always check the permissions of the created directory,
in case some one else created the very same directory but
with incompatible permissions
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Due to the conversion from ssize_t to int we were losing bytes, and
ended up writing outside the receiver buffer. Similarly on the send,
due to the conversion to a lesser type, we could missinterpret the
end of the fragment.
The linux timer code was multiplying the result of the x86 time stamp
counter by 1000000 before dividing by the cpu frequency. This can
cause us to overflow 64 bits if the time stamp counter grows larger
than ~ 1.8e13 (about 8400 seconds after boot). To fix the issue the
units of opal_timer_linux_freq have been changed to MHz.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
the hwloc topology might not contain a NUMA object with hwloc < v2
if the node is not NUMA, so force the NUMA object count to one
in order to correctly allocate mca_btl_sm_component.sm_mpools.
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Add a missing constraint to the input operand list.
This fixes a regression caused by d4be138a7b.
Thanks to Orion Poplawski for reporting the issue.
Refs #2610
Signed-off-by: Nysal Jan K.A <jnysal@in.ibm.com>
This commit fixes a deadlock that can occur when the libc version
holds a lock when calling munmap. In this case we could end up calling
free() from vma_tree_delete which would in turn try to obtain the lock
in libc. To avoid the issue put any deleted vma's in a new list on the
vma module and release them on the next call to vma_tree_insert. This
should be safe as this function is not called from the memory hooks.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This should probably not go to the v2.x branch, since it changes the
output format of the usnic stats.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Double check the queue lengths that we get back from libfabric to
ensure that they are at least as long as we need. They *should* never
be shorter than we need, but let's just check to be sure.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Don't just blindly send ACKs; ensure that we have send credits before
doing so. If we don't have any send credits, just don't send the ACK
(it'll come again soon enough; it's not a tragedy if we don't send it
now).
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
The libfabric usnic provider may give you back TX/RX queues that are
longer than you asked for. So just use the TX/RQ/CQ lengths that we
asked for, regardless of what length comes back.
Additionally, keep the length of the priority channel CQ separate from
the length of the data CQ.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Since the usnic BTL is single-threaded in this area, there really is
no danger, but don't use one of the pointers hanging off the frag
after we return it to the freelist. Instead, save the endpoint
pointer before returning the frag.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
The types are technically typedef equivalent, but it's less confusing
to use the types that agree with the name of the constructor.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
on Linux, sending the header and then the message data does severely
impact performances of ptl/tcp :
on the receiver, reading the data can often result in an PMIX_ERR_RESOURCE_BUSY
or PMIX_ERR_WOULD_BLOCK, which ends up degrading performances)
this commit send both header and message data at the same time via writev()
and makes ptl/tcp virtually as efficient as ptl/usock.
Short writev generally occur when the kernel buffer is full, so there is no
point for retrying in this case.
fwiw, no such degradation was observed on OSX.
Refs open-mpi/ompi#2657
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
The MCA variable code calls the string from value function with a NULL
string to verify values. The verbosity enumerator was not correctly
checking for a non-NULL value before trying to set the string.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes a bug in the timer check. When -fPIC is used we need
to save/restore ebx. The code copied from patcher was meant for 32-bit
systems and did not work correctly on 64-bit systems. This commit
updates the save/restore to use rbx instead of ebx.
Fixes#2678
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
there is no such thing as pthread_join(main_thread), so key destructors
are never invoked on the main thread, which causes valgrind report
some memory leaks. Manually store and then invoke the key destructors and
make valgrind happy.
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Samples are taken after MPI_Init, and then again after MPI_Barrier. This allows the user to see memory consumption caused by add_procs, as well as any modex contribution from forming connections if pmix_base_async_modex is given.
Using the probe simply involves executing it via mpirun, with however many copies you want per node. Example:
$ mpirun -npernode 2 ./mpi_memprobe
Sampling memory usage after MPI_Init
Data for node rhc001
Daemon: 12.483398
Client: 6.514648
Data for node rhc002
Daemon: 11.865234
Client: 4.643555
Sampling memory usage after MPI_Barrier
Data for node rhc001
Daemon: 12.520508
Client: 6.576660
Data for node rhc002
Daemon: 11.879883
Client: 4.703125
Note that the client value on node rhc001 is larger - this is where rank=0 is housed, and apparently it gets a larger footprint for some reason.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Revamp the event notification integration to rely on the PMIx event chaining and remove the duplicate chaining in OPAL. This ensures we get system-level events that target non-default handlers.
Restore the hostname entries for MPI-level error messages, but provide an MCA param (orte_hostname_cutoff) to remove them for large clusters where the memory footprint is problematic. Set the default at 1000 nodes in the job (not the allocation).
Begin first cut at memory profiler
Some minor cleanups of memprobe
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Plug a minor memory leak. Tell the PMIx server not to create a dstore memory region for the daemon job as there is nobody to share it with.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Protect users of hwloc membind functions
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Update PMIx to include NULL string protection
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Update to PMIx master to include key overwrite protection
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
There are only five places in the non-daemon code paths where opal_hwloc_topology is currently referenced:
* shared memory BTLs (sm, smcuda). I have added a code path to those components that uses the location string
instead of the topology itself, if available, thus avoiding instantiating the topology
* openib BTL. This uses the distance matrix. At present, I haven't developed a method
for replacing that reference. Thus, this component will instantiate the topology
* usnic BTL. Uses the distance matrix.
* treematch TOPO component. Does some complex tree-based algorithm, so it will instantiate
the topology
* ess base functions. If a process is direct launched and not bound at launch, this
code attempts to bind it. Thus, procs in this scenario will instantiate the
topology
Note that instantiating the topology on complex chips such as KNL can consume
megabytes of memory.
Fix pernode binding policy
Properly handle the unbound case
Correct pointer usage
Do not free static error messages!
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
MPI_T_pvar_get_index was returning an incorrect index. The index
was never set correctly while registering the performance variables.
Additionally fix a missing case in the mca_base_var_type_t to MPI
datatype conversion. This type is currently used for control variables
registered by mxm, fca and hcoll components.
Signed-off-by: Nysal Jan K.A <jnysal@in.ibm.com>
- Fix capitolization typos
- Make comment more correct / flow better
- Use AM_CPPFLAGS, not DEFAULT_INCLUDES
- Remove extra "hwloc/" from external hwloc.h specification
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
- simply #include "hwloc.h" to use the external hwloc header
- do use the external hwloc header instead of opal/mca/hwloc/hwloc.h
Thanks Orion Poplawski for the report
Fixesopen-mpi/ompi#2616
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Fine tuning of flux component
Fix a few minor issues with the initial cut:
* Job id could be obtained from the PMI kvsname like SLURM,
but simpler to getenv (FLUX_JOB_ID)
* Flux pmi-1 doesn't define PMI_BOOL, PMI_TRUE, PMI_FALSE
* Flux pmi-1 maps the deprecated PMI_Get_kvs_domain_id() to
PMI_KVS_Get_my_name() internally, so just call that instead.
* Drop residual slurm references.
Add wrappers for PMI functions so that if HAVE_FLUX_PMI_LIBRARY
is not defined, the component can dlopen libpmi.so at location
specified by the FLUX_PMI_LIBRARY_PATH env variable, which adds
flexibility. If HAVE_FLUX_PMI_LIBRARY is defined, link with
libpmi.so at build time in the usual way.
Update configury for flux component
Update m4 so the configure options work as follows:
--with-flux-pmi
Build Flux PMI support (default: yes)
--with-flux-pmi-library
Link Flux PMI support with PMI library at build
time. Otherwise the library is opened at runtime at
location specified by FLUX_PMI_LIBRARY_PATH environment
variable. Use this option to enable Flux support when
building statically or without dlopen support (default: no)
If the latter option is provided, the library/header is located at
build time using the pkg-config module 'flux-pmi'. Otherwise there
is no library/header dependency.
Handle the case where ompi is configured with --disable-dlopen
or --enable-statkc. In those cases, don't build the component
unless --with-flux-pmi-library is provided.
It is fatal if the user explicitly requests --with-flux-pmi but
it cannot be built (e.g. due to --disable-dlopen).
Add a schizo/flux component
Update schizo/flux component
Eliminate slurm-specific usage cases.
Since the module is only loaded if FLUX_JOB_ID is set, there are
only two cases to handle:
1) App was launched indirectly through mpirun. This is not yet
supported with Flux, but hook remains in case this mode is supported
in the future.
2) App was launched directly by Flux, with Flux providing
CPU binding, if any.
Fix up white space in pmix/flux component
Drop non-blocking fence from pmix:flux component
The flux PMI-1 library is not thread safe, therefore
register a regular blocking fence callback instead of the
thread-shifting fencenb().
pmix/flux component avoids extra PMI_KVS_Gets
Keys stored into the base cache under the wildcard
rank are not intended to be part of the global key namespace.
These keys therefore should not trigger a PMI_KVS_Get() if they
are not found in the cache.
Minor pmix/flux component cleanup
pmix/flux: drop code for fetching unused pmix_id
pmix/flux: err_exit must return error
Problem: in flux_init(), although 'ret' (variable holding
err_exit return code) is initialized to OPAL_ERROR, the
variable is reused as a temporary result code, so if there are
some successes followed by a failure that doesn't set 'ret',
flux_init() could return success with PMI not initialized.
Ensure that a "goto err_exit" returns OPAL_ERROR if 'ret'
is not set to some other error code.
pmix/flux: don't mix OPAL_ and PMI_ return codes
Problem: flux_init() can return both PMI_ and OPAL_ return
codes. Although OPAL_SUCCESS and PMI_SUCCESS are both defined
as 0, other codes are not compatible.
Ensure that flux_init() consistently uses 'rc' for PMI_
return codes and 'ret' for OPAL_ return codes.
pmix/flux: factor out repeated code for cache put
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Newer x86 processors have a core invariant tsc. On these systems it is
safe to use the rtdtsc instruction as a monotonic timer. This commit
adds a new function to the opal timer code to check if the timer
backend is monotonic. On x86 it checks the appropriate bit and on
other architectures it parrots back the OPAL_TIMER_MONOTONIC value.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Update ORTE support for dynamic PMIx operations e.g., PMIx_Spawn
Update to track master
Ensure that --disable-pmix-dstore actually disables the dstore. Sync to a few debugger updates
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
It turns that there is an incompatibility between the Cray PMI
library and the default configuration for building Open MPI (master).
To work around this, we now disable use of aprun for direct launch
of Open MPI jobs except under specific conditions.
The problem is that there are now (on master) packages getting
initialized that do not work properly across a fork operation.
As part of a constructor in the Cray PMI library, a fork operation
is done to simplify use of shared memory between the
processes in a job on the same node. This ends up thoroughly
messing up the Open MPI initialization process in the case
that dlopen support is enabled. The initialization process gets
about half-way through when the PMIX framework is opened and
components are loaded, which triggers the Cray PMI constructor
and hence the fork operation.
There are two workarounds for this:
1) configure Open MPI for Cray XE/XC systems using aprun with the
--disable-dlopen option
2) set the PMI_NO_FORK environment variable in the shell in which
the aprun command is run.
Without taking these measures, a Open MPI job will just hang at
job startup in the first attempt to "thread-shift" the PMIx
fence_nb operation. Additional hangs occur at shutdown if this
problem is worked around, again due to the insertion of a fork
operation halfway through the Open MPI initialization procedure.
This commit detects if the conditions that bring out the hang
situation are present, and if so, prints out a message and
aborts the job launch.
Note on systems using slurm, the PMI_NO_FORK environment variable
is set as part of the srun job launch, hence this issue is avoided
on those systems.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
An file might have been destroyed by an other task between
readdir() and stat(), so simply ignore stat() failure.
That typically occurs when one task is removing the job_session_dir
and an other task is still removing its proc_session_dir.
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
opal_convertor_pack() might pack less bytes than requested,
so always set frag->segments[0].seg_len.
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
PR open-mpi/ompi#2432 introduced a regression where configure
and build with --disable-dlopn caused build failure owing
to unresolved alps lli symbols in the libopal-pal shared library.
This commit fixes this problem.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
Enhance the cray pmix component to set some OMPI internal
env. variables used to set some key/value pairs
on the MPI_INFO_ENV object. This allows more of the
ompi-tests ibm unit tests to pass when using aprun/srun
direct launch and Cray PMI.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
since pthreads are now mandatory, the MCA_BTL_TCP_SUPPORT_PROGRESS_THREAD
is always true and hence can be safely removed
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Remove BTL_OPENIB_FAILOVER_ENABLED code in the openib btl source.
Remove the failover-specific files from the openib btl.
Update the openib/Makefile.am accordingly.
Remove the -enable-openib-failover config logic.
Signed-off-by: Steve Wise <swise@opengridcomputing.com>
This commit rewrites much of the btl/self component to fix a long
standing memory usage bug. Before this commit the prepare_src path
would always allocate a max send fragment (256kB). This caused the
rank to allocate 32 * 256k useless buffers from one send. This commit
makes the following changes:
- Add the MCA_BTL_FLAGS_GET flag by default. No reason not to set it.
- Reduce the eager limit, max send size, buffers per allocation, and
maximum buffer count per fragment size. These changes should have
no noticible affect on performance but should greatly reduce the
memory usage of the component.
- Implement the sendi function. This should reduce self send latency
somewhat.
- Rewrite prepare_src to never allocate a eager or max send fragment
for contiguous data.
- add_procs needs to return something in the peer array for the proc
self not just set the reachability bit. Now stores (void *) 1.
- Various cleanups. Removed and unused file.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
The vader btl kept a per-peer registration cache to keep track of
attachments. This is not really a problem with small numbers of local
ranks but can be a problem with large SMP machines. To reduce the
footprint there is now one registration cache for all xpmem
attachments. This will probably increase the lookup time for large
transfers but is a worthwhile trade-off.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
the class system can be initialized/finalized as many times as we like,
so there is no more need to have opal_class_finalize() invoked in a destructor
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
libnl and libnl-3 are known to conflict with each other, so detect
and abort if these two libs are both used directly (e.g. Open MPI
uses libnl-3) or indirectly (e.g. libibverbs.so might depend on libnl)
Still not completely done as we need a better way of tracking the routed module being used down in the OOB - e.g., when a peer drops connection, we want to remove that route from all conduits that (a) use the OOB and (b) are routed, but we don't want to remove it from an OFI conduit.
OMPI header cannot be included in OPAL source code, hence removed it.
Fixes: (740b636db) btl/openib: Disqualify rdmacm CPC if
MPI_THREAD_MULTIPLE.
Signed-off-by: Potnuri Bharat Teja <bharat@chelsio.com>
if MPI_Init[_thread]/MPI_Finalize and MPI_T_init_thread/MPI_T_finalize
are balanced, opal_initialized is zero, and hence opal_cleanup destructor
never invokes opal_class_finalize.
if MPI_Init[_thread] nor MPI_T_init_thread have been called, classes is NULL,
so opal_class_finalize does nothing
