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Edgar Gabriel
ba163c611c checkpoint before moving to a real cluster. Most of the recoding should be 
done. This version also doesn't break ompi (at least if its not chosen :-) ).
New features compared to the version from last Thursday (where bcast and
reduce seemed to work in most scenarios):
- clearer internal infrastructure
- ability to handle all root processes with a (hopefully) minimal number of
local leader communicators. 

This commit was SVN r7769.
 2005-10-15 17:04:01 +00:00
Edgar Gabriel
84c070fc0f get rid of the different modes how to store the colorarray for now. Might be 
reintroduced later as an optimization.

This commit was SVN r7762.
 2005-10-14 18:11:21 +00:00
Edgar Gabriel
6d14440972 checkpoint for moving again to another machine. major rewrite to clean 
up internal interfaces in progress.

This commit was SVN r7761.
 2005-10-14 17:41:44 +00:00
Edgar Gabriel
770aeaf97b modifications towards adding new local-leader communicators. 
This commit was SVN r7760.
 2005-10-14 12:18:29 +00:00
Graham Fagg
636b42afff handle non existant recv buf in reduce for non root processes 
(basic allreduce does this for mpi_in_place case)

This commit was SVN r7759.
 2005-10-14 00:00:37 +00:00
Graham Fagg
61b8218d76 MPI_IN_PLACE fix for reduce. 
(actually a work around for an optimisation in the reduce for not saving ops on the first recv of each segment)
Minor change in topo.

This commit was SVN r7758.
 2005-10-13 23:38:21 +00:00
Edgar Gabriel
48f2563b4c checkpoint. Moving to another machine. 
This commit was SVN r7757.
 2005-10-13 20:04:26 +00:00
Edgar Gabriel
4b05359b16 minor fixes when freeing the component 
This commit was SVN r7756.
 2005-10-13 18:22:16 +00:00
Edgar Gabriel
0a5a346bbb first cut on the reduce operation. 
This commit was SVN r7755.
 2005-10-13 17:58:13 +00:00
Edgar Gabriel
30af775d40 further fixes. The first hierarchical MPI_Bcast works! Its just ~ 100 times slower then basic at the moment :-) 
This commit was SVN r7754.
 2005-10-13 17:34:42 +00:00
Edgar Gabriel
460b5cb840 further corrections to the hierarchy detection algorithms. It seems to work now as far as my tests show... 
This commit was SVN r7753.
 2005-10-13 16:21:13 +00:00
Edgar Gabriel
f5d16419b2 fix in the logic regarding protocol detection. 
This commit was SVN r7749.
 2005-10-13 15:07:35 +00:00
Edgar Gabriel
5d7fbd9d2e minor change in bml_r2_add_procs: the memory for the bml_endpoints structure 
has to be allocated outside of the routine. Thus, the update version of pml/ob1/oml_ob1.c

This commit was SVN r7739.
 2005-10-12 20:59:25 +00:00
Edgar Gabriel
3e5ad3e681 Updates 
This commit was SVN r7738.
 2005-10-12 20:56:29 +00:00
Tim Woodall
22f460bdc5 merge in changes from release branch 
This commit was SVN r7737.
 2005-10-12 20:24:43 +00:00
Tim Woodall
6da9561ea8 merge in correction from v1.0 
This commit was SVN r7732.
 2005-10-12 16:40:52 +00:00
Tim Woodall
d859855dea merge in changes from 1.0 
This commit was SVN r7728.
 2005-10-12 15:54:35 +00:00
Edgar Gabriel
25518b63c5 first version of coll_hierarch which does not crash the rest of the 
library as long as its not selected :-)

This commit was SVN r7707.
 2005-10-11 22:05:24 +00:00
Edgar Gabriel
0675c22dab updating with Jeff's help to the recent autogen/configure system 
This commit was SVN r7705.
 2005-10-11 21:50:16 +00:00
Edgar Gabriel
7b07dbc163 another round of fixes. Unfortunatly, I also have to provide a trivial 
version of reduce and gather to make all this work....

This commit was SVN r7702.
 2005-10-11 21:26:07 +00:00
Tim Woodall
4a71621410 merge in scheduling changes from release branch 
This commit was SVN r7699.
 2005-10-11 20:41:51 +00:00
Edgar Gabriel
c8adc2e65e coding around the collective operations 
This commit was SVN r7698.
 2005-10-11 20:34:17 +00:00
Edgar Gabriel
083d0b9630 Checkpoint: most of the coding should be done for the basic 
infrastructure.

This commit was SVN r7696.
 2005-10-11 19:45:21 +00:00
Graham Fagg
607bdf51b6 Last Cleanup BEFORE adding last two methods and final cross over points. 
- new mca param calls
- move printfs to OPAL_OUTPUT

This commit was SVN r7692.
 2005-10-11 18:51:03 +00:00
Edgar Gabriel
b42d4ac780 Checkpoint: 
- update the hierarch stuff to use btl's instead of ptl's
- start the new logic regarding how to handle local leader communicators

This commit was SVN r7691.
 2005-10-11 17:29:59 +00:00
Galen Shipman
23cbac25c8 lower default free list sizes.. 
This commit was SVN r7676.
 2005-10-09 18:15:12 +00:00
Galen Shipman
fb19cc4177 compiler warning fixes.. 
This commit was SVN r7661.
 2005-10-07 17:38:34 +00:00
Jeff Squyres
b22fab2826 Fix for a bug Galen noticed yesterday -- make the shared memory only 
be allocated the first time a sm coll is selected for a communicator,
not before.

This commit was SVN r7647.
 2005-10-06 13:17:27 +00:00
George Bosilca
1fe18814da Decrease the default length for the first fragment. 
This commit was SVN r7643.
 2005-10-06 00:05:01 +00:00
George Bosilca
0f04132b13 mx_connect in the MX documentation is supposed to take a timeout in seconds. However, in real life it seems that the timeout should be in micro-second. 
This commit was SVN r7642.
 2005-10-06 00:04:27 +00:00
Brian Barrett
b7ef094766 * the cid in the header is only 16 bits, so limit our max cid to what can fit in there. 
This commit was SVN r7639.
 2005-10-05 15:43:28 +00:00
Jeff Squyres
83b5a675f9 Don't automatically take the first entry off the selected component 
list; be sure to check its priority against the basic component and
take the one with the higher priority.

This commit was SVN r7621.
 2005-10-04 17:09:45 +00:00
Jeff Squyres
b17c4334c4 - Remove all vestigates of using the built-in mcb_tree from the 
reduce_inorder() function -- we don't use the tree at all.
- Add more relevant "volatile"'s for the control buffers in the
  fragment mpool (and associated casts where necessary)

This commit was SVN r7616.
 2005-10-04 14:52:59 +00:00
Tim Woodall
3b4a134a24 - removed unused define 
- correct free to release registration rather than retain it

This commit was SVN r7611.
 2005-10-04 14:33:26 +00:00
George Bosilca
f8355ec104 Cast the right side member to void* before assignment. 
This commit was SVN r7608.
 2005-10-04 12:37:23 +00:00
George Bosilca
6b3d02b514 Warning cleanups. On some OSes the iov_base member of the iovec structure is defined as an void * when 
on others as an char*. Thus the right side of all assignment should be explicitly casted to an void* in
order to avoid any casting complaints from the compilers.

This commit was SVN r7607.
 2005-10-04 12:36:07 +00:00
George Bosilca
3453a6c0e9 Remove some compiler warnings about unused variables 
Correctly define the 64 bits constants.
Some minor cleanups.

This commit was SVN r7606.
 2005-10-04 12:29:51 +00:00
George Bosilca
492c0e59dc Correct the casting type and remove some useless output (already commented out). 
This commit was SVN r7605.
 2005-10-04 12:28:47 +00:00
Tim Woodall
c05ef28f6e - added routine to ompi_pointer_array to remove array contents 
- corrected memory hook callback to catch all allocations (need to optimize this)
- don't attempt to consolidate allocations

This commit was SVN r7600.
 2005-10-03 23:29:26 +00:00
Jeff Squyres
c7fe54ba44 - Remove some silly compiler warnings 
- Move the "process 0" logic out of the main loop in reduce to make
  the code a bit less complex (at the price of slight code
  duplication, but it iss now significantly easier to read)
- Fix problem with uniquenes guarantee in the bootstrap mpool -- using
  the CID alone was not sufficient enough to guarantee uniquenes; now
  use (CID, rank 0 process name) tuple to check for uniqueness
- Made a few debugging help changes in coll_sm.h; especially helps
  debugging on uniprocessors

This commit was SVN r7599.
 2005-10-03 21:34:58 +00:00
Jeff Squyres
2cedfeec53 - Eliminate some unused base globals 
- Move one base global to the basic component and make it an MCA
  parameter 
- Convert the basic component to use the new MCA param API

This commit was SVN r7598.
 2005-10-03 21:07:42 +00:00
Jeff Squyres
57fb96b018 Clarification of a help message 
This commit was SVN r7597.
 2005-10-03 21:06:13 +00:00
Jeff Squyres
ab099fa8cb Re-indent; real commit with some changes coming shortly. 
This commit was SVN r7596.
 2005-10-03 19:56:39 +00:00
Galen Shipman
eefe0fd04a fix threaded compile 
fix misc warnings 
cleanup posting of receive descriptors 
comment why we retain before deregister in rcache_rb_mru.c 

This commit was SVN r7595.
 2005-10-03 16:35:12 +00:00
Galen Shipman
f46548e691 Add SRQ support to OpenIB btl, removed old mca param - not used.. 
This commit was SVN r7585.
 2005-10-02 18:58:57 +00:00
Jeff Squyres
10064df0e9 Remove compiler warning 
This commit was SVN r7578.
 2005-10-02 10:43:53 +00:00
Jeff Squyres
37fc944b01 Use the right number of segments per in-use flag when calculating 
offsets.

This commit was SVN r7571.
 2005-09-30 23:12:23 +00:00
Galen Shipman
67d38b7896 Add multi-nic support to openib 
Fix connection establishment race in openib 
Other misc 

This commit was SVN r7570.
 2005-09-30 22:58:09 +00:00
Jeff Squyres
934caaf449 Fix at least one segv; use the right number of segments (i.e., the 
number o segments in the fragment pool, not in the bootstrap pool)

This commit was SVN r7565.
 2005-09-30 18:01:15 +00:00
Brian Barrett
db872a0fbb * check that return from ibv_get_devices isn't NULL before calling dlist_start(). 
On thor, if IB is down, we get NULL back from ibv_get_devices(), which then
  caused segfaults in dlist_start().
* Pretty-print error message if no HCAs found

This commit was SVN r7557.
 2005-09-30 14:58:59 +00:00
Jeff Squyres
fcef1774d5 Per advice from Ralf W., change the pkgdata declarations in 
Makefile.am's to be a *slightly* more correct (and, more importantly,
less error-prone) construct.

This commit was SVN r7554.
 2005-09-30 13:32:39 +00:00
Jeff Squyres
80b7deb4d7 Add in EXTRA_DIST to get helpfile in tarballs 
This commit was SVN r7553.
 2005-09-30 10:25:04 +00:00
Brian Barrett
7b20370306 * pretty-print an error message if a btl component loads but can't find 
any NICs to use
* Make mvapi, gm, and mx components all publish information, even if there
  are no NICs available so that modex_recv doesn't hang.  If there are no
  NICs available, don't set the reachable bit, but don't do anything
  to fail.  This unfortunately doesn't cover the hangs that will result if
  different procs load different sets of components, but it's a start

This commit was SVN r7550.
 2005-09-30 04:39:44 +00:00
Brian Barrett
a77c908496 * the last of the tuning params for portals 
This commit was SVN r7548.
 2005-09-30 04:05:31 +00:00
Galen Shipman
8239e635b9 fix misc warnings, cleanup macro.. 
This commit was SVN r7547.
 2005-09-30 03:13:51 +00:00
Galen Shipman
05e6e51fec re-reg from min of bases and max of bounds 
add byte counting for total registered memory 

This commit was SVN r7546.
 2005-09-29 21:28:54 +00:00
Jeff Squyres
bc181d7130 Remove the .ompi_ignore so that everyone starts compiling this, but 
lower the default priority to 0 so that it's not active unless you
specifically ask for it (this component needs more testing by people
other than me before we unleash it on the public).

This commit was SVN r7545.
 2005-09-29 18:05:47 +00:00
Brian Barrett
997644af31 * There are now two forms of ibv_create_cq, one with 3 params and one with 5. 
Try to detect which form this version of Open IB uses, defaulting to the 5
  version if we can't figure it out (the new version has 5 params)
* Only add -lcm if it exists on the system - some versions of Open IB
  apparently don't need it.

This commit was SVN r7542.
 2005-09-29 13:35:57 +00:00
Galen Shipman
3ded88a3c0 use addr +size -1 instead of base->addr as base->addr is down_aligned. 
This commit was SVN r7536.
 2005-09-28 20:19:33 +00:00
Galen Shipman
26a74d42fa release, not retain on gm_free 
This commit was SVN r7535.
 2005-09-28 20:18:52 +00:00
Edgar Gabriel
67dd52efb1 making the allreduce and reduce_scatter tests pass as well 
This commit was SVN r7532.
 2005-09-28 15:12:05 +00:00
Galen Shipman
c1f5543f62 need to call mpool_release on all registrations obtained in the pml. 
sanity checks 

This commit was SVN r7530.
 2005-09-28 04:49:40 +00:00
Galen Shipman
b9b78f8f5d modify rcache_rb to find registrations in the middle of a base and bound 
This commit was SVN r7528.
 2005-09-28 02:11:35 +00:00
Edgar Gabriel
dbbbd416df fixing MPI_IN_PLACE for the log-reduce algorithm. 
This commit was SVN r7526.
 2005-09-27 21:51:55 +00:00
Galen Shipman
0fc17cedee change order of ops on register 
This commit was SVN r7525.
 2005-09-27 21:43:41 +00:00
Galen Shipman
09e67ce4fd fix off by one on up_align_addr, use base and bound instead of base_align and 
bound_align.. 

This commit was SVN r7521.
 2005-09-27 18:10:44 +00:00
Galen Shipman
af04b3e1ab fix warnings.. 
This commit was SVN r7515.
 2005-09-27 14:23:51 +00:00
Galen Shipman
3c97b3f722 Modified the registration to include a base_align and bound_align for 
searching the tree. Modified the memory callback to search the tree at each
page boundary for registrations. This is necessary as an application may
malloc memory and send out of any portion of that memory, even discontiguous
regions. 

This commit was SVN r7510.
 2005-09-27 02:01:21 +00:00
Brian Barrett
d9e80d8f2a * increase size of event queue for receives - it was too small to be useful 
on a reasonably sized machine
* if no mpool exists, don't try to malloc out an array of 0 bytes

This commit was SVN r7507.
 2005-09-25 17:04:03 +00:00
Galen Shipman
384c472c94 reset ompi_pointer_array in mca_rcache_rb_find otherwise you might use an old 
registration by accident.. 

This commit was SVN r7506.
 2005-09-24 20:48:14 +00:00
Galen Shipman
02ce7a176e had that backwards.. 
This commit was SVN r7504.
 2005-09-24 16:58:07 +00:00
Galen Shipman
d1246be47e should be strictly > or < 
This commit was SVN r7503.
 2005-09-24 16:45:34 +00:00
Galen Shipman
c53d51778a fix for warnings.. 
This commit was SVN r7501.
 2005-09-24 15:08:28 +00:00
Galen Shipman
9fe5844071 decrement ref count on removal of registration from mru and tree. 
add misc asserts to check for proper reference counting. 

ugly hack 1 -- use mallopt to never release memory ala sbrk - this is
commented out in mca_btl_mvapi_component_init

ugly hack 2 -- test registrations comming out of the tree via rcache_find, for
an unknown reason the tree is returning registrations where the address is not
within the base or bound of the registration. If this happens, we return
NULL. 

comment out code to enable mem hooks if leave_pinned is set, note we can do
this via an mca param and will default it to leave_pinned with mem_hooks when
we iron out these issues. 

I am adding a unit test for the rcache. Note that we have a unit test for the
rb tree but the compare function is significantly different than that used for
registrations. After we have tracked down the issues with rcache_rb we will
remove the above hacks. 

This commit was SVN r7499.
 2005-09-24 00:24:49 +00:00
Brian Barrett
50dc5499b4 * fix some remaining --with-btl-portals configure issues 
This commit was SVN r7498.
 2005-09-24 00:11:40 +00:00
Brian Barrett
0d68728b94 * add some more debugging output for send fragment issue to figure out why 
Red Storm is complaining about invalid memory pointer (need to go back
  to Linux and look at this with valgrind)
* Turn off send in place for now, so I can run the tests on RS and see if
  everything else is ok

This commit was SVN r7497.
 2005-09-23 19:30:54 +00:00
Brian Barrett
07b0b8c943 * add some useful debugging output 
* fix dumb bug in btl_portals_get where I using the dest descriptor key instead
  of the source descriptor key for the match bits, resulting in a PtlGet() with
  the wrong match bits

This commit was SVN r7496.
 2005-09-23 15:30:18 +00:00
Tim Woodall
604c9d1002 bump the default cache size 
This commit was SVN r7492.
 2005-09-22 19:37:42 +00:00
Tim Woodall
848f12e7fd if mpi_leave_pinned is enabled - force malloc hooks 
This commit was SVN r7491.
 2005-09-22 17:27:56 +00:00
Tim Woodall
147716c249 added hostname to error output 
This commit was SVN r7486.
 2005-09-22 16:41:34 +00:00
Tim Woodall
b404581293 local variables/objects (regs) must be initialized/constructed 
This commit was SVN r7485.
 2005-09-22 16:18:23 +00:00
Tim Woodall
7acf0a6bdb corrections for MPI_Free_mem 
This commit was SVN r7481.
 2005-09-22 15:47:33 +00:00
Andrew Friedley
555ae37255 Add lib{opal,orte,mpi}.la to appropriate LIBADD's, some whitespace cleanup as well. 
This commit was SVN r7477.
 2005-09-22 12:28:54 +00:00
Tim Woodall
da1e4a1292 - since we append new registrations to the end of the list, 
need to remove old ones from the front
- call deregister to actually remove items from the cache/mru
list and deregister the memory (if not being used)

This commit was SVN r7476.
 2005-09-21 23:25:16 +00:00
Tim Woodall
9791c066e8 dont attempt to pin the receive buffer if data has 
already been received

This commit was SVN r7475.
 2005-09-21 23:23:47 +00:00
Tim Woodall
1b7b220089 cleanup refcount 
This commit was SVN r7462.
 2005-09-21 20:04:56 +00:00
Tim Woodall
a74ca0062a reductions to initial memory footprint 
This commit was SVN r7455.
 2005-09-21 19:10:56 +00:00
Galen Shipman
4296e723c9 default free_lists to smaller size.. 
This commit was SVN r7454.
 2005-09-21 18:55:07 +00:00
Galen Shipman
96ab5a6bd3 we can be in WAITING_ACK state without a race if the OOB ack is "slower" than 
the scheduling of queued IB send operations. 

This commit was SVN r7452.
 2005-09-21 16:47:08 +00:00
Tim Woodall
782e5b21cc cleanup 
This commit was SVN r7451.
 2005-09-21 15:34:45 +00:00
Tim Woodall
a49a442fe4 cleanup refcount logic 
This commit was SVN r7450.
 2005-09-21 15:32:27 +00:00
Tim Woodall
0ee34051f8 debug asserts 
This commit was SVN r7449.
 2005-09-21 15:30:17 +00:00
Tim Woodall
1b73d3856e possible race condition - set endpoint state before sending connect ack 
This commit was SVN r7448.
 2005-09-20 21:03:55 +00:00
Brian Barrett
fd9901f683 * shell of a portals PML, properly ompi_ignored for most of the world... 
This commit was SVN r7437.
 2005-09-20 08:07:08 +00:00
Brian Barrett
d81726833e * Add memory barriers for shared memory. Rich and I think we got them 
all and the Intel tests pass slightly oversubscribed.

This commit was SVN r7431.
 2005-09-19 16:28:25 +00:00
Tim Woodall
aeb5bc3f57 still need to cleanup/revise the template for mpool changes 
This commit was SVN r7425.
 2005-09-19 14:34:24 +00:00
George Bosilca
b70230858b Correct the misnaming problem in the GM PTL. 
This commit was SVN r7424.
 2005-09-19 10:34:06 +00:00
Galen Shipman
6499eb3976 init the return code.. 
This commit was SVN r7423.
 2005-09-18 14:25:30 +00:00
George Bosilca
97673b45d1 Remove the last bad symbol from the GM PTL. 
This commit was SVN r7422.
 2005-09-18 12:52:37 +00:00
George Bosilca
b5cb27c006 The self should use self named files. 
This commit was SVN r7421.
 2005-09-18 12:37:15 +00:00