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Граф коммитов

16948 Коммитов

Автор SHA1 Сообщение Дата
Brian Barrett
2e52374847 * Split send and receive eq sizes
* Need to look at slot count before flowcontrol for sending to prevent
  race in restart
* Need to free pending request fragments when done with the request
* A number of branch prediction optimizations for error conditions

This commit was SVN r26430.
2012-05-10 21:43:48 +00:00
Jeff Squyres
2d78728d38 Fix the macro name in the comment: it's EXTRA_DIST, not EXTRA_SOURCES.
This commit was SVN r26429.
2012-05-10 14:07:36 +00:00
Jeff Squyres
ddcdc20640 Reconcile NEWS with 1.6 branch
This commit was SVN r26428.
2012-05-10 14:04:48 +00:00
Jeff Squyres
b325c17c72 It's a little weird to put in a blank _SOURCES line for the
HDFSFileFinder PROGRAM, but if we don't put in a _SOURCES line at all,
Automake will default to "HDFSFileFinter_class_SOURCES =
HDFSFileFinder.c", which clearly will cause problems.  

But we don't want to put the .java file in _SOURCES, either, because
we haven't configured Automake to handle Java (because current
versions of Automake only have GCJ, not other Java compilers).  So set
HDFSFileFinder_class_SOURCES to blank and list the .java file in
EXTRA_SOURCES (so that they get picked up for "make dist").

This commit was SVN r26424.
2012-05-10 13:54:51 +00:00
Yevgeny Kliteynik
244d66d95b Fixed FDR link speed details, added EDR.
This commit was SVN r26423.
2012-05-10 13:44:18 +00:00
Jeff Squyres
1d7fef001c Record the upstream hwloc commit that we've committed here in the OMPI
tree

This commit was SVN r26422.
2012-05-10 12:15:23 +00:00
Ralph Castain
b9d560263f Ensure we properly handle systems that do not have a jdk installed
This commit was SVN r26421.
2012-05-10 12:06:59 +00:00
Ralph Castain
b143633593 Fix java config
This commit was SVN r26420.
2012-05-10 01:51:02 +00:00
Nathan Hjelm
91d99c6fef ugni: reserve memory domain descriptors (MDDs) for mailbox registration
This commit was SVN r26419.
2012-05-10 00:24:42 +00:00
Jeff Squyres
9c9d7e77df Commit a fix for hwloc -- still checking with upstream to see if this
will be the final solution.  But I'm committing it now so that
Oracle's Solaris Studio builds can resume.

The issue is that the C++ bindings are now (eventually) including
<hwloc.h>.  We use !__hwloc_inline__ and #define it to an appropriate
value at compile-time.  The issue is that when we're compiling C++
code, we should just set !__hwloc_inline__ to "inline", because that's
a keyword in the C++ language (as opposed to !__inline__, or
somesuch).

This commit was SVN r26418.
2012-05-09 21:03:45 +00:00
Jeff Squyres
de4bbacd13 It turns out that we can't always include the hwloc OpenFabrics verbs
helper file, even if we find that the system has <infiniband/verbs.h>.
The reason is because there are some inline functions in that verbs
helper file that invoke ibv_* functions.  Some linkers (e.g., Solaris
Studio Compilers) will instantiate those static inline functions --
even if we don't use them -- and therefore we need to be able to
resolve the ibv_* symbols at link time.

But since -libverbs is only specified in places where we use other
ibv_* functions (e.g., the OpenFabrics-based BTLs), that means that
linking random executables can/will fail (e.g., orterun).

So instead, introduce a new #define: OPAL_HWLOC_WANT_VERBS_HELPER.  If
this macro is set to 1 before including opal/mca/hwloc/hwloc.h, then
you'll also get the hwloc OpenFabrics verbs helper header file (*if*
hwloc found <infiniband/verbs.h> -- otherwise, it'll #error).

This commit was SVN r26417.
2012-05-09 20:18:31 +00:00
Ralph Castain
640f0610aa Fix the makefile to install the perl scripts properly
This commit was SVN r26416.
2012-05-09 14:06:02 +00:00
Jeff Squyres
50bac6d4d7 Oops! This is a stale file (i.e., old implementation that isn't used anymore).
This commit was SVN r26415.
2012-05-09 13:35:39 +00:00
Ralph Castain
fd796cce0a Add an allocator tool for finding HDFS file locations and obtaining allocations for those nodes (supports both Hadoop 1 and 2). Split the Java support into two parts: detection of Java support and request for Java bindings.
This commit was SVN r26414.
2012-05-09 01:13:49 +00:00
Jeff Squyres
02aa36f2e5 ORTE defaults to killing the entire job when any process exits with a
nonzero status (we polled other MPI implementations since one one in
the OMPI community had a concrete opinion on what behavior to do here
-- all other MPI's seem to adhere to this behavior, too).

This commit adds an MCA parameter that allows us to tell ORTE to
''not'' kill jobs when a process exits with a status of 77, meaning
the GNU testing standard of "this test was skipped".  In all the OMPI
tests, all procs will either return 77 or not.  So if they all return
77, mpirun won't consider it an error, but will still return an exit
status of 77 (so that MTT can know that the test was cleanly skipped).

This commit was SVN r26413.
2012-05-08 21:49:05 +00:00
Jeff Squyres
c00d1d4f91 Add note that --bind-to-socket does not work on some Linux kernels for
POWER6 and POWER7 systems.  

This is still an unresolved issue; the Linux kernel does not expose
enough (correct) information for OMPI to be able to do anything
rational.  IBM is working on it.

This commit was SVN r26410.
2012-05-08 21:27:36 +00:00
Mike Dubman
cd17fee9a8 performance fix: openib use memalign for malloc
This commit was SVN r26409.
2012-05-08 20:42:09 +00:00
Jeff Squyres
3928a1ea42 Add missing AC_MSG_CHECKING (i.e., we were seeing a result message
without a corresponding "checking" message)

This commit was SVN r26408.
2012-05-08 17:20:09 +00:00
Jeff Squyres
e35ca05917 * Update svn:ignore to ignore example program
* Add "example" executable to CLEANFILES

This commit was SVN r26407.
2012-05-08 14:59:14 +00:00
Ralph Castain
84d031d6c1 Add daemon object to job array after creation
This commit was SVN r26406.
2012-05-08 13:39:20 +00:00
Ralph Castain
70d4f14be3 Add affinity extension to platform file
This commit was SVN r26404.
2012-05-08 04:00:05 +00:00
Ralph Castain
70a106fa71 Fix binding on remote nodes - need to pass the binding bitmap!
This commit was SVN r26403.
2012-05-08 03:52:39 +00:00
Nathan Hjelm
903f9fac09 ugni: fixed buffered sends and code cleanup
This commit was SVN r26401.
2012-05-07 17:23:06 +00:00
Nathan Hjelm
49eda71ca0 ugni: fix invalid parameter with opal_pointer_array_init
This commit was SVN r26400.
2012-05-07 17:22:55 +00:00
Nathan Hjelm
584c457352 ugni: update smsg defaults and add parameter to control local completion queue size
This commit was SVN r26399.
2012-05-07 17:22:49 +00:00
Nathan Hjelm
bfcf67391a ugni: set fragment id from opal_pointer_array_add
This commit was SVN r26398.
2012-05-07 17:22:42 +00:00
Nathan Hjelm
b3dc726e9d ugni: don't create completion queues until add_procs
This commit was SVN r26397.
2012-05-07 17:22:35 +00:00
Nathan Hjelm
0e48ea1f65 vader: remove #include of headers that no longer exist
This commit was SVN r26396.
2012-05-07 17:22:28 +00:00
Nathan Hjelm
a32d4c648d ob1: rewind convertor after failed send
This commit was SVN r26395.
2012-05-07 17:22:22 +00:00
Nathan Hjelm
b94e7af5c8 LANL: update XE-6 platform files
This commit was SVN r26394.
2012-05-07 17:22:14 +00:00
Jeff Squyres
43f3332929 Add an OMPI_Affinity_str() example program.
This commit was SVN r26393.
2012-05-07 15:19:23 +00:00
Jeff Squyres
a6d5654623 Update README and NEWS to reflect that carto, maffinity, and paffinity
are gone.

This commit was SVN r26392.
2012-05-07 14:58:59 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Mike Dubman
1b475523de add support for FDR speed
This commit was SVN r26385.
2012-05-06 05:53:05 +00:00
Ralph Castain
44b8608f0a Convert debug to verbose
This commit was SVN r26384.
2012-05-05 17:46:10 +00:00
Ralph Castain
96bfeb591c Ensure flag is passed to remote daemons
This commit was SVN r26383.
2012-05-03 22:31:25 +00:00
Ralph Castain
45fee2b491 Resolve the case where only the HNP is in the system (i.e., single-node operation)
This commit was SVN r26382.
2012-05-03 18:00:01 +00:00
Ralph Castain
c352ca36c2 Minor cleanup
This commit was SVN r26381.
2012-05-02 21:23:37 +00:00
Ralph Castain
b2f77bf08f Extend the iof by adding two new components to support map-reduce IO chaining. Add a mapreduce tool for running such applications.
Fix the state machine to support multiple jobs being simultaneously launched as this is not only required for mapreduce, but can happen under comm-spawn applications as well.

This commit was SVN r26380.
2012-05-02 21:00:22 +00:00
Ralph Castain
40c2fc5f55 Update the tests, add a couple
This commit was SVN r26379.
2012-05-02 19:00:05 +00:00
Ralph Castain
c5da4f24d7 Fix stupid singletons - get the pidmap message correct
This commit was SVN r26378.
2012-05-02 17:48:02 +00:00
Jeff Squyres
b5f4dd3fce Skip some more common files.
This commit was SVN r26377.
2012-05-02 13:05:37 +00:00
Jeff Squyres
8d87f591ca * Add bullets for 1.6
* Add a few items in the "not on a release branch" yet section

This commit was SVN r26374.
2012-05-02 12:59:32 +00:00
Nathan Hjelm
b6ae288a59 fix segfault when pml direct enabled
This commit was SVN r26371.
2012-05-01 23:12:41 +00:00
Ralph Castain
8f7bf3344a Update test
This commit was SVN r26370.
2012-05-01 18:38:44 +00:00
Ralph Castain
4542070cf2 Add event priority inversion test
This commit was SVN r26369.
2012-05-01 16:42:22 +00:00
Ralph Castain
a8db2fc95f Add procs to each node's map on the daemons
This commit was SVN r26368.
2012-05-01 16:41:35 +00:00
Ralph Castain
a927318ea1 Add -N option as synonym for "npernode"
This commit was SVN r26367.
2012-05-01 16:18:14 +00:00
Brian Barrett
0ae2277796 Add a backoff mechanism for re-establishing communication
This commit was SVN r26366.
2012-05-01 15:53:00 +00:00
Brian Barrett
74ade8b181 need to order the pending list before we restart
This commit was SVN r26365.
2012-04-30 23:06:00 +00:00