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Граф коммитов

394 Коммитов

Автор SHA1 Сообщение Дата
Oscar Vega-Gisbert
296bc56241 Java: apply a patch which solves the ticket #4313
This commit was SVN r31470.
2014-04-21 21:44:25 +00:00
George Bosilca
399c8b18d2 Fix a parameter check. Thanks Lisandro Dalcin for the bug report.
More info @ http://www.open-mpi.org/community/lists/devel/2014/04/14561.php

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31467.
2014-04-21 17:00:56 +00:00
George Bosilca
95a4f219ea This commit fixes some of the Coverity reported warnings. I addressed
some of the collective modules, the shared memory and the profiling
interface. I left out VT, dynamic fcoll and seq rmaps.

cmr=v1.8.1:reviewer=jsquyres:subject=silence Coverity reported warnings

This commit was SVN r31309.
2014-04-06 18:23:49 +00:00
Jeff Squyres
173c046617 build: add Automake-like silent/verbose macros for "ln -s ..." operations
Also, since I put some of the macros for these silent/verbose rules up
in the top-level Makefile.man-page-rules file, I renamed it to
Makefile.ompi-rules.

I've had this sitting around for a while; now seems like as good a
time as any to commit it.

This commit was SVN r31271.
2014-03-28 18:24:32 +00:00
Nathan Hjelm
595a6e94e6 Fix typos in r31260
Also added some missing values and sentinels.

cmr=v1.8:ticket=trac:4470

This commit was SVN r31263.

The following SVN revision numbers were found above:
  r31260 --> open-mpi/ompi@69036437b7

The following Trac tickets were found above:
  Ticket 4470 --> https://svn.open-mpi.org/trac/ompi/ticket/4470
2014-03-27 22:34:28 +00:00
Jeff Squyres
24f7bd327e MPI-3: Add missing MPI_Comm_get|set_info functions
Thanks to Lisandro Dalcin for pointing out the issue.

cmr=v1.8:reviewer=hjelmn

This commit was SVN r31262.
2014-03-27 21:41:59 +00:00
Nathan Hjelm
69036437b7 Add missing MPI_WEIGHTS_EMPTY constant
cmr=v1.8:reviewer=jsquyres

This commit was SVN r31260.
2014-03-27 20:59:52 +00:00
Nathan Hjelm
545d5daced osc: add missing MPI_ERR_RMA_SHARED error code and internal equivalent
cmr=v1.8:reviewer=jsquyres

This commit was SVN r31259.
2014-03-27 20:06:43 +00:00
Nathan Hjelm
6648a46963 rma: fix semantic errors in osc/rdma and MPI_Win_fence
- Return an error if the caller specified both MPI_MODE_NOPRECEDE and
   MPI_MODE_NOSUCCEED to MPI_Win_fence.

 - Return an error if the caller attempts to enter an active target
   epoch while already in a passive target epoch.

 - End an active target epoch if MPI_Win_fence is called with
   MPI_MODE_NOSUCCEED.

cmr=v1.7.5:ticket=trac:4382

This commit was SVN r31043.

The following Trac tickets were found above:
  Ticket 4382 --> https://svn.open-mpi.org/trac/ompi/ticket/4382
2014-03-12 17:14:03 +00:00
Jeff Squyres
da87b506bd Remove warnings identified by clang 3.4
* Remove unused static functions
 * Remove unused static variables

cmr=v1.8:reviewer=hjelmn

This commit was SVN r31023.
2014-03-12 13:17:54 +00:00
Ralph Castain
647fdaaa22 Fix an MPI-3 compliance buglet - MPI_Info_set should now use "const" qualifiers on the key and value parameters
cmr=v1.7.5:reviewer=jsquyres

This commit was SVN r31013.
2014-03-11 23:50:09 +00:00
Ralph Castain
49d938de29 Merge one-sided updates to the trunk - written by Brian Barrett and Nathan Hjelmn
cmr=v1.7.5:reviewer=hjelmn:subject=Update one-sided to MPI-3

This commit was SVN r30816.
2014-02-25 17:36:43 +00:00
Ralph Castain
b787e2054f Silence warning
cmr=v1.7.5:reviewer=ompi-gk1.7

This commit was SVN r30721.
2014-02-14 00:00:23 +00:00
Christoph Niethammer
010a806a58 Omit usage of pre calculated prime numbers and factorize directly.
Optimization of the MPI_Dims_create function which omits the usage of pre
calculated prime numbers and factorize directly as discussed at the developer
list.

cmr=v1.7.5:ticket=4217:reviewer=jsquyres

This commit was SVN r30695.

The following Trac tickets were found above:
  Ticket 4217 --> https://svn.open-mpi.org/trac/ompi/ticket/4217
2014-02-12 08:47:33 +00:00
Christoph Niethammer
85dce869c8 Move parameter check into appropriate code section at the begin.
Freeprocs variable was obtained from nnodes, so check the value of nnodes at
the begin in the MPI_PARAM_CHECK code section instead as discussed at the
developer list.

cmr=v1.7.5:reviewer=jsquyres:subject=move parameter check to begin


jsquyres, please review this CMR. Thanks.

This commit was SVN r30694.
2014-02-12 08:30:13 +00:00
Jeff Squyres
6f8e76df7e Revert r30539 and r30540; using the sqrt() to limit the computation is
just plain wrong (i.e., it gives wrong answers).  

When time permits, perhaps we can put in a better algorithm for
MPI_DIMS_CREATE (Andreas Schäfer mentioned that nnodes can now be on
the order of millions, and the current algorithm is... inefficient, at
best).

This commit was SVN r30606.

The following SVN revision numbers were found above:
  r30539 --> open-mpi/ompi@fb67d98867
  r30540 --> open-mpi/ompi@4417ed2133
2014-02-07 13:46:48 +00:00
Jeff Squyres
fa02bba7c5 Remove a bunch of extra whitespace.
Thanks to Andreas Schäfer for the original patch.

This commit was SVN r30541.
2014-02-03 19:30:43 +00:00
Jeff Squyres
4417ed2133 Gah; I missed the #include in r30539.
cmr=v1.7.5:ticket=trac:4217

This commit was SVN r30540.

The following SVN revision numbers were found above:
  r30539 --> open-mpi/ompi@fb67d98867

The following Trac tickets were found above:
  Ticket 4217 --> https://svn.open-mpi.org/trac/ompi/ticket/4217
2014-02-03 19:28:07 +00:00
Jeff Squyres
fb67d98867 Suggestion from Andreas Schäfer: we really only need sqrt(freeprocs)
primes.  This considerably reduces the computational load when
freeprocs is large.

cmr=v1.7.5:reviewer=hjelmn:subject=MPI_Dims_create optimization

This commit was SVN r30539.
2014-02-03 19:21:04 +00:00
Brian Barrett
8b778903d8 Fix longstanding issue with our multi-project support. Rather than using
pkg{data,lib,includedir}, use our own ompi{data,lib,includedir}, which is
always set to {datadir,libdir,includedir}/openmpi.  This will keep us from
having help files in prefix/share/open-rte when building without Open MPI,
but in prefix/share/openmpi when building with Open MPI.

This commit was SVN r30140.
2014-01-07 22:11:15 +00:00
Jeff Squyres
1448522d15 In an MPI_IBCAST, we cannot shortcut if there's only 1 process.
cmr=v1.7.4:reviewer=brbarret:subject=Fix IBCAST for COMM_SELF
-This line, and those below, will be ignored--

M    c/ibcast.c

This commit was SVN r30054.
2013-12-22 22:55:58 +00:00
Nathan Hjelm
ba4b0f9235 Remove meaningless checks. Refs trac:3828
This commit was SVN r29375.

The following Trac tickets were found above:
  Ticket 3828 --> https://svn.open-mpi.org/trac/ompi/ticket/3828
2013-10-04 17:24:59 +00:00
Nathan Hjelm
70878764d7 Silence compiler warnings on 32-bit platforms. Refs trac:3828
This commit was SVN r29374.

The following Trac tickets were found above:
  Ticket 3828 --> https://svn.open-mpi.org/trac/ompi/ticket/3828
2013-10-04 15:53:14 +00:00
Nathan Hjelm
c17b21b11d Due to MPI_Comm_idup we can no longer use the communicator's CID as
the fortran handle. Use a seperate opal_pointer_array to keep track of
the fortran handles of communicators.

This commit also fixes a bug in ompi_comm_idup where the newcomm was not
set until after the operation completed.

cmr=v1.7.4:reviewer=jsquyres:ticket=trac:3796

This commit was SVN r29342.

The following Trac tickets were found above:
  Ticket 3796 --> https://svn.open-mpi.org/trac/ompi/ticket/3796
2013-10-03 01:11:28 +00:00
Nathan Hjelm
195c892a9d Add support for MPI_Comm_dup_with_info, MPI_Comm_create_group, and
MPI_Comm_idup.

As part of this work I implemented a basic request scheduler in
ompi/comm/comm_request.c. This scheduler might be useful for more
than just communicator requests and could be moved to ompi/request
if there is a demand. Otherwise I will leave it where it is.

Added a non-blocking version of ompi_comm_set to support ompi_comm_idup.
The call makes a recursive call to comm_dup and a non-blocking version
was needed. To simplify the code the blocking version calls the nonblocking
version and waits on the resulting request if one exists.

cmr=v1.7.4:reviewer=jsquyres:ticket=trac:3796

This commit was SVN r29334.

The following Trac tickets were found above:
  Ticket 3796 --> https://svn.open-mpi.org/trac/ompi/ticket/3796
2013-10-02 14:26:40 +00:00
Jeff Squyres
114022146a Add a missing "const" to MPI_Unpack (addendum to r29266).
Refs trac:3785.

This commit was SVN r29278.

The following SVN revision numbers were found above:
  r29266 --> open-mpi/ompi@0b8fc13299

The following Trac tickets were found above:
  Ticket 3785 --> https://svn.open-mpi.org/trac/ompi/ticket/3785
2013-09-27 12:48:28 +00:00
Nathan Hjelm
0b8fc13299 MPI-3.0: update C bindings with const and consistent use of [] for
arrays.

The MPI 3.0 standard added const to all in buffers in the C bindings. This
commit adds the const keyword and in most cases casts const away. We will
eventually should go through and update the various interfaces (coll, pml,
io, etc) to take the const keyword. The group, comm, win, and datatype
interfaces have been updated with const.

cmr=v1.7.4:ticket=trac:3785:reviewer=jsquyres

This commit was SVN r29266.

The following Trac tickets were found above:
  Ticket 3785 --> https://svn.open-mpi.org/trac/ompi/ticket/3785
2013-09-26 21:56:20 +00:00
Nathan Hjelm
c5596548b2 MPI-3: Add support for neighborhood collectives
Blocking versions are simple linear algorithms implemented in coll/basic. Non-
blocking versions are from libnbc 1.1.1. All algorithms have been tested with
simple test cases.

cmr=v1.7.4:reviewer=jsquyres

This commit was SVN r29265.
2013-09-26 21:55:08 +00:00
George Bosilca
85db48df0e Identification, tab vs. space.
This commit was SVN r29206.
2013-09-18 16:45:00 +00:00
Ralph Castain
99611ac1d2 Revert r29166 in favor of a better solution from George
This commit was SVN r29199.

The following SVN revision numbers were found above:
  r29166 --> open-mpi/ompi@497c7e6abb
2013-09-18 01:41:26 +00:00
Ralph Castain
497c7e6abb Fixes trac:2904
The intercomm "merge" function can create a linkage between procs that was not reflected anywhere in a modex, and so at least some of the procs in the resulting communicator don't know how to talk to some of the new communicator's peers.

For example, consider the case where:

1. parent job A comm_spawns a process (job B) - these processes exchange modex and can communicate

2. parent job A now comm_spawns another process (job C) - again, these can communicate, but the proc in C knows nothing of B

3. do an intercomm merge across the communicators created by the two comm_spawns. This puts B and C into the same communicator, but they know nothing about how to talk to each other as they were not involved in any exchange of contact info. Hence, collectives on that communicator now fail. 

This fix adds an API to the ompi/dpm framework that (a) exchanges the modex info across the procs in the merge to ensure all procs know how to communicate, and (b) calls add_procs to give the btl's a chance to select transports to any new procs.

cmr:v1.7.3:reviewer=jsquyres

This commit was SVN r29166.

The following Trac tickets were found above:
  Ticket 2904 --> https://svn.open-mpi.org/trac/ompi/ticket/2904
2013-09-15 15:00:40 +00:00
George Bosilca
2aed876be6 Fix the bug where MPI_is_thread_main returns true for all
threads when not in MPI_THREAD_MULTIPLE mode.
Thanks to Lisandro Dalcin for pointing it out.

This commit was SVN r29113.
2013-09-04 11:10:51 +00:00
Ralph Castain
c5f395d36a Silence unitialized var warnings
This commit was SVN r29035.
2013-08-16 21:37:35 +00:00
George Bosilca
710d3836d5 Use a recv convertor for the pack external case.
This commit was SVN r29003.
2013-08-06 09:09:42 +00:00
Nathan Hjelm
cb90a4a7fc Add simple algorithms to support MPI_IN_PLACE for MPI_Alltoall, MPI_Alltoallv, and MPI_Alltoallw.
Working on faster algorithms for tuned that will come at a later time.

cmr=v1.7.3:ticket=trac:2965

This commit was SVN r28952.

The following Trac tickets were found above:
  Ticket 2965 --> https://svn.open-mpi.org/trac/ompi/ticket/2965
2013-07-25 19:19:41 +00:00
Nathan Hjelm
c4c69b4ddf MPI-3: add support for large counts using derived datatypes
Add support for MPI_Count type and MPI_COUNT datatype and add the required
MPI-3 functions MPI_Get_elements_x, MPI_Status_set_elements_x,
MPI_Type_get_extent_x, MPI_Type_get_true_extent_x, and MPI_Type_size_x.
This commit adds only the C bindings. Fortran bindins will be added in
another commit. For now the MPI_Count type is define to have the same size
as MPI_Offset. The type is required to be at least as large as MPI_Offset
and MPI_Aint. The type was initially intended to be a ssize_t (if it was
the same size as a long long) but there were issues compiling romio with
that definition (despite the inclusion of stddef.h).

I updated the datatype engine to use size_t instead of uint32_t to support
large datatypes. This will require some review to make sure that 1) the
changes are beneficial, 2) nothing was broken by the change (I doubt
anything was), and 3) there are no performance regressions due to this
change.

Increase the maximum number of predifined datatypes to support MPI_Count

Put common get_elements code to ompi/datatype/ompi_datatype_get_elements.c

Update MPI_Get_count to reflect changes in MPI-3 (return MPI_UNDEFINED when the count is too large for an int)

This commit was SVN r28932.
2013-07-23 15:35:14 +00:00
George Bosilca
5fae72b9aa Add the MPI 2.2 MPI_Dist_graph functionality.
This patch reshape the way we deal with topologies completely. Where
our topologies were mainly storage components (they were not capable
of creating the new communicator), the new version is built around a
[possibly] common representation (in mca/topo/topo.h), but the functions
to attach and retrieve the topological information are specific to each
component. As a result the ompi_create_cart and ompi_create_graph functions
become useless and have been removed.

In addition to adding the internal infrastructure to manage the topology
information, it updates the MPI interface, and the debuggers support and
provides all Fortran interfaces.

This commit was SVN r28687.
2013-07-01 12:40:08 +00:00
Jeff Squyres
34fb0712c4 Per https://svn.mpi-forum.org/trac/mpi-forum-web/ticket/256, we need
to set *flag=1 when source == MPI_PROC_NULL.

cmr:v1.7.2:reviewer=dgoodell
cmr:v1.6.5:reviewer=dgoodell

This commit was SVN r28621.
2013-06-12 21:38:07 +00:00
Ralph Castain
3e6e1046a3 fix a correctness issue by returning an error if waitall fails and invoking the mpi error handler
cmr:v1.7.2:reviewer=jsquyres

This commit was SVN r28533.
2013-05-16 15:04:37 +00:00
George Bosilca
2331000d63 Correctly handle the invalid status for null and inactive
requests. This patch fixes trac:3475.

CMR v1.6, v1.7

This commit was SVN r28431.

The following Trac tickets were found above:
  Ticket 3475 --> https://svn.open-mpi.org/trac/ompi/ticket/3475
2013-05-01 12:55:24 +00:00
Jeff Squyres
eeb1d83c1d Don't assign the status if MPI_STATUS_IGNORE is passed in. Thanks to
Lisandro Dalcin for finding the issue.

This commit was SVN r28430.
2013-05-01 12:32:58 +00:00
Jeff Squyres
975ff4675e rc was used before it was initialized. Looks like this minor bug was
introduced in r28241.

This commit was SVN r28316.

The following SVN revision numbers were found above:
  r28241 --> open-mpi/ompi@9d4a26f47d
2013-04-09 21:49:15 +00:00
Nathan Hjelm
9d4a26f47d Update OMPI frameworks to use the MCA framework system.
Notes:
  - This commit also eliminates the need for an available components list in use
    in several frameworks. None of the code in question was making use of the
    priority field of the priority component list item so these extra lists were
    removed.
  - Cleaned up selection code in several frameworks to sort lists using opal_list_sort.
  - Cleans up the ompi/orte-info functions. Expose the functions that construct the
    list of params so they can be used elsewhere.

patches for mtl/portals4 from brian

missed a few output variables in openib

This commit was SVN r28241.
2013-03-27 21:17:31 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Brian Barrett
312f37706e In talking about this with Jeff and Ralph, we don't actually need
ompi_show_help, because opal_show_help is replaced with an 
aggregating version when using ORTE, so there's no reason to
directly call orte_show_help.

This commit was SVN r28051.
2013-02-12 21:10:11 +00:00
Joshua Ladd
70ad711337 Backing out the Open SHMEM project
This commit was SVN r28050.
2013-02-12 17:45:27 +00:00
Mike Dubman
ff384daab4 Added new project: oshmem.
This commit was SVN r28048.
2013-02-12 15:33:21 +00:00
Brian Barrett
f42783ae1a Move the RTE framework change into the trunk. With this change, all non-CR
runtime code goes through one of the rte, dpm, or pubsub frameworks.

This commit was SVN r27934.
2013-01-27 23:25:10 +00:00
George Bosilca
4a581d276d Fix the issues with the MPI_Op and the Fortran90 types.
This commit was SVN r27707.
2012-12-19 11:08:18 +00:00
Ralph Castain
6aac54b02e Revert r27510, r27509, and r27508.
Not sure what happened here, but the resulting trunk wouldn't even configure. After spending time fixing that problem, I found it wouldn't compile due to multiple syntax errors that had been introduced in both the OPAL and OMPI layer. This raised questions as to the completeness of the work.

Given that the author is departing, I pinged Jeff about it and we agreed to revert this for now. Hopefully, it can either be fixed by the author prior to actual departure, or someone else can pick it up (now that it is in the history) and fix it.

This commit was SVN r27511.

The following SVN revision numbers were found above:
  r27508 --> open-mpi/ompi@12c3c743de
  r27509 --> open-mpi/ompi@79e4a8ca38
  r27510 --> open-mpi/ompi@1ad5ff625a
2012-10-27 16:43:45 +00:00