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Граф коммитов

221 Коммитов

Автор SHA1 Сообщение Дата
George Bosilca
68c36ea9dc Fix two annoying warnings in our UCX support. 2016-02-14 00:02:16 -05:00
Alex Mikheev
f627608e42 OSHMEM/UCX: implements atomic support
ucx atomic component has a real code now.
fixes bug in spml ucx arr_procs
removes redundant parameter checks from atomic components.
2016-01-21 16:02:28 +02:00
Gilles Gouaillardet
fec973efda configury: test portability
replace test ... -o ... with test ... || test ...
and test ... -a ... with test ... && test ...
2015-12-28 13:58:45 +09:00
Gilles Gouaillardet
99d046d060 scoll/fca: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
igor.ivanov@itseez.com
08c18195e7 oshmem/sshmem: Fix warnings in verbs component 2015-12-16 17:37:00 +02:00
igor.ivanov@itseez.com
6448bd07a4 oshmem/spml: Fix warnings in ikrit component 2015-12-16 17:36:54 +02:00
Igor Ivanov
5c061abf4e oshmem: Fix scan coverity issues
1324740 - Resource leak
1304562 - Unchecked return value
1340514 - Dereference before null check
1340515 - Use of untrusted scalar value
1340516 - Use of untrusted string value
2015-12-02 12:49:19 +02:00
Igor Ivanov
05d947d55a oshmem: Align OSHMEM API with spec v1.2 (support environment variables) 2015-11-24 18:57:56 +02:00
Mike Dubman
3e93ef49da Merge pull request #1134 from alex-mikheev/topic/ikrit_err_fix_fix
SPML/IKRIT: opal_progress and ud_only fixes
2015-11-15 19:20:55 -06:00
Mike Dubman
a7128af8c4 OSHMEM/ikrit: fix valgrind error 2015-11-15 14:51:41 +02:00
Alex Mikheev
0755a59091 SPML/IKRIT: opal_progress and ud_only fixes
Some MXM tls such as self, shm can comlete requests immediately.
Make sure that opal_progress() is called before before request
is completed.

fix ud_only logic when hw rdma channel is using ud and main
transport is rc or dc.
2015-11-15 12:13:24 +02:00
Mike Dubman
8ec5c99412 Merge pull request #1126 from alex-mikheev/topic/ikrit_err_fix
Topic/ikrit err fix
2015-11-11 15:31:06 +02:00
Alex Mikheev
cd8ea438d3 OSHMEM/SPML/ikrit: memcheck support 2015-11-11 13:46:20 +02:00
Alex Mikheev
2a8de45b43 OSHMEM/SPML/IKRIT: check return of mxm_req_send correctly
do not force memory registration if main and additional comm
channels are both ud
2015-11-11 13:34:26 +02:00
Igor Ivanov
c0518c0417 oshmem: Enable force output for error messages
This change fixes issue when oshmem related error messages are not
visible for an user.
2015-11-11 13:26:10 +02:00
Alex Mikheev
b269dd59e3 OSHMEM/SPML/UCX: fixes typo in add_procs 2015-11-02 16:48:26 +02:00
Ralph Castain
e1778f5f9b Revert " changing the destruct function of list release API to release list items"
This reverts commit 720fa860ee.
2015-10-27 15:24:45 -07:00
rhc54
0bc51375f3 Merge pull request #1004 from rppendya/rppendya_list_release
Releasing the list items when list destructor is called
2015-10-21 14:34:19 -07:00
yosefe
cc76db8d39 ucx: reduce components priority to 5. 2015-10-21 17:38:25 +03:00
Raghavendra Pendyala
720fa860ee changing the destruct function of list release API to release list items
caused a bug in oshmem application. Fixing the bug with this patch
2015-10-20 12:58:23 -07:00
Alex Mikheev
f2b501a862 oshmem: Add UCX spml. 2015-10-20 19:46:02 +03:00
Alex Mikheev
b020b628fc oshmem/memheap: optimized mkey lookup.
Fast path lookup is done in inline funcion.
2015-10-20 19:45:51 +03:00
yosefe
bd3f4c8cc7 spml/memheap: add support for mkey unpack. 2015-10-20 19:45:50 +03:00
Alex Mikheev
8fa14386ea spml_ikrit: fixes typo in .h file. 2015-10-20 19:36:41 +03:00
Gilles Gouaillardet
291a464efb configury: remove the --enable-mpi-profiling option
and directly call the PMPI_* symbols from C and Fortran bindings
2015-10-13 08:52:35 +09:00
Gilles Gouaillardet
53b952dc2b oshmem: invoke the C PMPI_* subroutines instead of the MPI_* ones
when profiling is built.
This prevents oshmem subroutines from being wrapped twice by third
party tools (e.g. once in oshmem and once in MPI)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php

Thanks to Bert Wesarg for bringing this to our attention
2015-10-13 08:52:03 +09:00
Igor Ivanov
7de0537a1d oshmem: Add help message for fatal issues in scoll:mpi and scoll:fca
Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
2015-09-21 18:50:20 +03:00
Igor Ivanov
ec7cd13a81 oshmem: Fix compilation warnings 2015-09-21 18:50:20 +03:00
Igor Ivanov
ca8c3eebea oshmem: Abort application in casesingle scoll:mpi is selected
scoll:mpi does not have barrier and should be selected with
any other scoll component.

Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
2015-09-21 10:42:54 +03:00
Igor Ivanov
f437f4012e Revert "scoll/mpi: work around bug in oshmem/proc design"
This workaround is needless after oshmem/proc refactoring

This reverts commit 202c6a38e4.
2015-09-17 19:01:24 +03:00
Igor Ivanov
4b8d9b8eff oshmem/proc: Refactor proc component
Most functionality of oshmem_proc duplicates ompi_proc. In addition
to that, Current logic does not allow to do oshmem initialization
w/o ompi startup.
So this refactoring allows to  avoid code duplication, decrease used
memory and make oshmem support easier.
Now oshmem_proc is transparent ompi_proc structure, that can be
extended by oshmem specific data.

Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
2015-09-17 18:49:00 +03:00
Nathan Hjelm
69b9bc2269 oshmem/memheap: correct usage of opal_dss functions
Any buffer given to opal_dss.load becomes the responsibility of the
opal_buffer_t object. It will be freed automatically if either the
opal_buffer_t is released or opal_dss.load is called again on the
buffer. opal_dss.unload will not prevent this unless no unpacking
takes place between the .load and .unload calls.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-14 13:54:56 -06:00
Gilles Gouaillardet
8f2d3aeb65 oshmem: do not include pml/ob1 headers
this is an abstraction violation and that can cause linker failure
2015-09-11 09:34:10 +09:00
Nathan Hjelm
202c6a38e4 scoll/mpi: work around bug in oshmem/proc design
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-10 08:55:56 -06:00
Ralph Castain
cf6137b530 Integrate PMIx 1.0 with OMPI.
Bring Slurm PMI-1 component online
Bring the s2 component online

Little cleanup - let the various PMIx modules set the process name during init, and then just raise it up to the ORTE level. Required as the different PMI environments all pass the jobid in different ways.

Bring the OMPI pubsub/pmi component online

Get comm_spawn working again

Ensure we always provide a cpuset, even if it is NULL

pmix/cray: adjust cray pmix component for pmix

Make changes so cray pmix can work within the integrated
ompi/pmix framework.

Bring singletons back online. Implement the comm_spawn operation using pmix - not tested yet

Cleanup comm_spawn - procs now starting, error in connect_accept

Complete integration
2015-08-29 16:04:10 -07:00
Gilles Gouaillardet
1a238d3a4f configury: fix fca detection
* do not add -I/.../include/fca -I /.../include/fca_core to CPPFLAGS
 * allow configure --with-fca
 * search fca libs in both DIR/lib and DIR/lib64
 * fix the description of the --with-fca option
2015-08-13 11:09:15 +09:00
Jeff Squyres
5065978a1e oshmem: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
yosefe
41f3b77e31 ikrit: set DC defaults. 2015-07-24 21:01:13 +03:00
Nathan Hjelm
4d92c9989e more c99 updates
This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-25 10:14:13 -06:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Gilles Gouaillardet
11e11e1be9 initialize common symbols from oshmem 2015-05-08 10:11:58 +09:00
Nathan Hjelm
033894b493 Merge pull request #541 from hjelmn/c99_components
C99 component initialization
2015-04-20 10:45:39 -06:00
Devendar Bureddy
3dbd95fa73 OSHMEM: enable mpi collective by default 2015-04-20 19:39:36 +03:00
Nathan Hjelm
c4a61969c0 oshmem: use C99 subobject naming for component initialization
This commit helps future-proof oshmem components by initializing each
component member by name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-04-18 10:29:58 -06:00
Nathan Hjelm
b68d66bb9b MCA: Add the project/project version to the MCA base component
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.

All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:04 -06:00
Jeff Squyres
8d04215741 coll: trivial spelling fix
s/Algoritm/Algorithm/g
2015-02-27 18:20:17 -08:00
Alina Sklarevich
e4c4e7df5e Fix the calls to ibv_fork_init and remove btl_openib_want_fork_support.
In order to have an effect, ibv_fork_init should be called in the
beginning of the verbs initialization flow - before the calls to the
ibv_create_qp and ibv_create_cq verbs.
These functions are called from the oob/ud code and by the time the
other verbs components (btl openib, pml yalla, ...) call ibv_fork_init,
it's too late. This commit forces the call to ibv_fork_init (if it's
requested) right at the beginning of all the components that are using
verbs.
(ibv_fork_init() can be safely called multiple times)

This commit also removes the btl_openib_want_fork_support mca parameter
and adds a new mca parameter instead - opal_verbs_want_fork_support.
Through this new parameter, fork support may be requested for ALL
components.
The default value for this parameter is set to 1.

Before this commit the btl_openib_want_fork_support parameter didn't
provide fork support for the openib btl if its value was set to 1.
(because when openib called ibv_fork_init, it was already after the
calls to ibv_create_* in oob/ud and thereofre it failed).
2015-02-25 10:58:50 +02:00
igor-ivanov
0f44cdd779 Merge pull request #421 from igor-ivanov/pr/fix-oshmem-coverity
oshmem: Fix set of coverity issues
2015-02-24 21:40:06 +04:00
Nathan Hjelm
5f1254d710 Update code base to use the new opal_free_list_t
Use of the old ompi_free_list_t and ompi_free_list_item_t is
deprecated. These classes will be removed in a future commit.

This commit updates the entire code base to use opal_free_list_t and
opal_free_list_item_t.

Notes:

OMPI_FREE_LIST_*_MT -> opal_free_list_* (uses opal_using_threads ())

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-02-24 10:05:45 -07:00
Igor Ivanov
3e2dd782ea oshmem: Fix set of coverity issues
Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
2015-02-24 19:03:10 +02:00