1
1

5526 Коммитов

Автор SHA1 Сообщение Дата
yohann
27520b99b8 mtl/ofi: add include/exclude list MCA vars.
mtl_ofi_provider_include (resp. mtl_ofi_provider_exclude) can be used
to specify which provider(s) the OFI MTL can select (resp. ignore).

e.g. --mca mtl_ofi_provider_include "psm,sockets"

By default, mtl_ofi_provider_exclude is set to "sockets,mxm".

This deprecates the old MCA var named "mtl_ofi_provider".
2015-08-12 13:52:04 -07:00
Jeff Squyres
e9b7203ece treematch: ensure hwloc support is enabled
This commit does the following:

* s/ompi_check_treematch/ompi_topo_treematch/ (i.e., abide by the
  prefix rule)
* change the value of ompi_topo_treematch_happy from yes/no to 0/1, so
  that we can use -eq for numerical comparisons (vs. string
  comparisons).  It's the little things in life, no?
* Check the valueo f $OPAL_HAVE_HWLOC to ensure that hwloc support is
  enabled.  If not, disqualify treematch from building.
* Fixes a few places that were underquoted
* Convert from "test ... -a ..." to "test ... && test ..."

Fixes open-mpi/ompi#797
2015-08-12 12:23:12 -07:00
Edgar Gabriel
55f0e1a1f8 fix the lustre compilation problems for older lustre versions. Add the prototype for the static function to avoid a warning message. 2015-08-12 09:45:07 -05:00
Jeff Squyres
3be125afff op base: whitespace cleanup
No logical code changes.
2015-08-12 05:35:11 -07:00
Jeff Squyres
a2addbafed op base: move return statement to correct level
This fixes CID 71945.
2015-08-12 05:35:11 -07:00
Nathan Hjelm
624a4a0f82 Merge pull request #699 from hjelmn/libnbc_fixes
coll/libnbc: rewrite parts of libnbc
2015-08-10 14:51:42 -06:00
Jeff Squyres
87db836800 Merge pull request #788 from yburette/topic/deprioritize_some_providers
mtl/ofi: Deprioritize some OFI providers.
2015-08-10 14:45:59 -04:00
Nathan Hjelm
d42e0968b1 coll/libnbc: rewrite parts of libnbc
This commit rewrites parts of libnbc to fix issues identified by
coverity and myself. The changes are as follows:

 - libnbc function would return invalid error codes (internal to
   libnbc) to the mpi layer. These codes names are of the form
   NBC_. They do not match up with the error codes expected by the mpi
   layer. I purged the use of all these error codes with the exception
   of NBC_OK and NBC_CONTINUE in progress. These codes are used to
   identify when a request handle is complete.

 - Handles and schedules were leaked by all collective routines on
   error. A new routine was added to return a collective handle
   (NBC_Return_handle).

 - Temporary buffers containting in/out neighbors for neighborhood
   collectives were always leaked.

 - Neigborhood collectives contained code to handle MPI_IN_PLACE which
   is never a valid input for the send or receive buffer. Stipped this
   code out.

 - Files were inconsistently named. Most are nbc_isomething.c but one
   was named coll_libnbc_ireduce_scatter_block.c.

 - Made the NBC_Schedule "structure" and object so it can be
   retained/released. This may enable the use of schedule caching at a
   later time. More testing will be needed to ensure the caching code
   works. If it doesn't the code should be stripped out completely.

 - Added code to simply common case of scheduling send/recv +
   barrier.

 - Code cleanup for readability.

The code now passes the clang static analyzer.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-08-10 11:53:25 -06:00
George Bosilca
0a91d7af4d Fix issues identified by Coverity. 2015-08-08 16:41:30 -04:00
Jeff Squyres
bd5bf4a224 Merge pull request #781 from hppritcha/topic/suppress_picky_warning
mca/topo: suppress picky warning
2015-08-08 06:14:52 -04:00
yohann
88038b5261 mtl/ofi: Deprioritize some OFI providers.
Some OFI providers such as "sockets" are used for debugging
purposes mostly. For these providers, other components usually
offer better performance -- e.g. for sockets, the BTL/TCP would
be a better choice.
Thus, we chose to ignore some providers unless explicitly asked
by the user on the command line:

e.g. --mca mtl_ofi_provider sockets
2015-08-07 16:09:51 -07:00
Edgar Gabriel
d719497f82 Performance tuning: increase the priority of the sm sharedfp component to ensure that it is selected if it can run. 2015-08-07 16:32:53 -05:00
Edgar Gabriel
9e29edf15c remove a erroneous paranthesis which prevents the compilation of the lustre adio 2015-08-07 15:22:41 -05:00
Edgar Gabriel
1293d9c69b free memory correctly in case of an error. Fixes CID 131540 and CID 1315419 2015-08-07 13:30:50 -05:00
Edgar Gabriel
0aa3049bfc Performance tuning: change the default behavior of ompio to *not* segment individual read/write operations.
In most cases, performance seems to be better if not segmented.
2015-08-07 13:06:39 -05:00
Edgar Gabriel
db5af26de7 Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with our optimized default file view. Otherwise, performance will suffer. file_get_view should still return the correct filetype, not our optimized default file view. This is the correct version compared to ffa67b96933acafb3cfacf39a074d3dc1fe134ae, which unfortunately broke
some test cases in mpi_test_suite. Thanks for @ggouaillardet for reporting this!
2015-08-07 12:49:58 -05:00
Edgar Gabriel
6f6c01ee8d free the datatypes that were created using type_dup during file_set_view 2015-08-07 11:50:25 -05:00
Edgar Gabriel
1ae4f8c7e6 Revert "Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with"
This reverts commit ffa67b96933acafb3cfacf39a074d3dc1fe134ae.
2015-08-07 09:53:07 -05:00
Gilles Gouaillardet
907c095f66 Merge pull request #779 from edgargabriel/topic/fcoll_fixes
Topic/fcoll fixes
2015-08-07 09:14:31 +09:00
Howard Pritchard
10aac8037f mca/topo: suppress picky warning
When configured with --enable-picky

topo_base_lazy_init.c compiles with a warning:

  CC       base/topo_base_lazy_init.lo
base/topo_base_lazy_init.c:46:67: warning: implicit conversion from enumeration type 'enum mca_base_register_flag_t' to different enumeration type 'mca_base_open_flag_t' (aka 'enum mca_base_open_flag_t') [-Wenum-conversion]
        err = mca_base_framework_open (&ompi_topo_base_framework, MCA_BASE_REGISTER_DEFAULT);

This commit fixes this implicit conversion problem.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-08-05 16:11:04 -06:00
Edgar Gabriel
16d4171f6b the individual component should call internal ompio functions directly. The reason is that otherwise
the redirection to the ompi_file_t structure (and back to the ompio internal structure) is ambiguise and wrong
for the shared file pointer scenario.
2015-08-05 14:31:11 -05:00
Edgar Gabriel
02a4eb2f13 add the ompi_file_t pointer correctly on the ompio file handle for the sm and individual component. 2015-08-05 14:28:27 -05:00
Jeff Squyres
a36d7e6026 treematch: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
Jeff Squyres
a0ebbee6ef libnbc: __FUNCTION__ -> __func__ fixes 2015-08-05 05:27:23 -07:00
Gilles Gouaillardet
3d1780f1a2 sharedfp: set f_fh when opening a shared file 2015-08-05 15:07:21 +09:00
Jeff Squyres
047eccef8d Merge pull request #725 from bosilca/treematch
Add a new topo module: Treematch
2015-07-31 15:17:54 -04:00
Howard Pritchard
8649a9f6ef Merge pull request #757 from roblatham00/lustre-excl-open-fix
hint processing should not open files
2015-07-31 12:16:14 -06:00
rhc54
a9b10cfbf0 Merge pull request #761 from jithinjosepkl/master
Fix warnings in direct (pml-cm,mtl-ofi) build
2015-07-31 09:15:30 -07:00
Edgar Gabriel
ffa67b9693 Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with
our optimized default file view. Otherwise, performance will suffer. file_get_view should still return the correct filetype, not our optimized default file view
2015-07-30 19:15:00 -05:00
Edgar Gabriel
93a303ba89 Performance tuning: make sure the individual component is selected for 1 and 2 process communicators (important for some benchmarks) 2015-07-30 17:31:16 -05:00
Edgar Gabriel
9b2a7e41f0 make sure the final number of aggregators is recorded correctly when not using
our aggregator selection logic.
2015-07-30 17:24:01 -05:00
Rob Latham
6e9cbe397f hint processing should not open files
move opening of files from hint processing and into open routines.

This is MPICH commit 92f1c69f0de8 and 22a77dceda11

see https://trac.mpich.org/projects/mpich/ticket/2261
Ref: https://github.com/open-mpi/ompi/issues/158

Signed-off-by: Pavan Balaji <balaji@anl.gov>
2015-07-30 12:25:20 -05:00
Jithin Jose
bc4e8b7e73 Fix warnings in direct (pml-cm,mtl-ofi) build
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
2015-07-29 15:49:37 -07:00
Edgar Gabriel
477083bca3 the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 2015-07-29 17:13:55 -05:00
Edgar Gabriel
217dcca853 - the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages.
- implementation of file_get_size and set_size
2015-07-29 17:10:39 -05:00
yohann
6eba52a121 mtl/ofi: add missing return. 2015-07-29 14:14:34 -07:00
Ralph Castain
023936e84b Silence coverity warnings 2015-07-29 07:28:08 -07:00
Edgar Gabriel
a3327fe299 Merge pull request #756 from edgargabriel/pr/nb-sharedfp-splitcoll2
- make the split collective shared file pointer operations work
2015-07-28 19:53:27 -05:00
Edgar Gabriel
3780089ce0 clean up the usage of opal_output vs. printf 2015-07-28 18:27:31 -05:00
Howard Pritchard
377bad18bd Merge pull request #747 from hppritcha/topic/ofi_progress_fix
mtl/ofi: don't inline ofi progress method
2015-07-28 09:42:01 -06:00
Edgar Gabriel
824d488709 - make the split collective shared file pointer operations work
- minor code restructering in io/ompio required for that.
2015-07-28 09:05:05 -05:00
Edgar Gabriel
e380f8c235 - fix the delete priority of the ompio component
- some application use MPI_File_delete as a collective function (e.g. IOR), which I think is not really covered by the standard. Right now, one process succeeds and theother ones return an error code. Fix that by not returning no error if the file that we try to delete does not exist anymore, to make these applications work.
2015-07-27 15:53:40 -05:00
Edgar Gabriel
3fb0614566 mark the request as ACTIVE 2015-07-27 12:43:45 -05:00
Edgar Gabriel
5e166c81a1 Merge pull request #745 from edgargabriel/pr/sharedfp-sm-logic3
Pr/sharedfp sm logic3
2015-07-27 12:04:53 -05:00
Howard Pritchard
f5c43c1185 mtl/ofi: retain inline progress function
Retain inline progress function for ofi
mtl, but have a non-inlined progress function
which is registered with the opal progress
mechanism.

 @jithinjosepkl

I've bad news about the psm provider.  I still notice
segfaults - not always - but frequently at finalize
when using the psm provider.  I don't notice this
when using the sockets provider.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-07-27 09:16:52 -06:00
Gilles Gouaillardet
318a1a40a4 coll/libnbc: ireduce_scatter_block
silence malloc(0) warning reported by Lisandro
2015-07-27 16:23:08 +09:00
George Bosilca
e239de581b Create a new topology framework using the TreeMatch library developped
at Inria Bordeaux. This allows us to take advantage of the remap
capability of MPI to rearrange the ranks beased on the weights
povided by the application.

Fix the indentation and protect with __DEBUG__ one fprintf.

Add the Cecill-B license to the imported library.

Fix a compiler warning.

Restrict the TreeMatch dependencies.

The TreeMatch software is released under BSD3 (as indicated by their
copyright information @
https://gforge.inria.fr/scm/viewvc.php/COPYING?view=markup&root=treematch).

Update the README.
2015-07-25 13:30:42 -04:00
Jeff Squyres
3e6694f7ea sharedfp: whitespace cleanup
No code changes.

Replace tabs with spaces and do other whitespace cleanup (via emacs).
2015-07-25 05:46:37 -07:00
Jeff Squyres
868a84d4da sharedfp: have sm_data->mutex always point to the right mutex
Even if the mutex is actually located in
sm_data->sm_offset_ptr->mutex, have sm_data->mutex point to it.  This
avoids a few #if blocks that are otherwise identical.
2015-07-25 05:42:57 -07:00
Edgar Gabriel
4f85e0d833 add the configure logic to check for sem_open and sem_init.
Change the code to rely on HAVE_SEM_OPEN etc. instead of my internal macro.
2015-07-24 10:23:43 -05:00