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Brian Barrett
84d1512fba Add the potential for doing some basic error checking on mutexes during
single threaded builds.  In its default configuration, all this does
is ensure that there's at least a good chance of threads building
based on non-threaded development (since the variable names will be
checked).  There is also code to make sure that a "mutex" is never
"double locked" when using the conditional macro mutex operations.
This is off by default because there are a number of places in both
ORTE and OMPI where this alarm spews mega bytes of errors on a
simple test.  So we have some work to do on our path towards
thread support.

Also removed the macro versions of the non-conditional thread locks,
as the only places they were used, the author of the code intended
to use the conditional thread locks.  So now you have upper-case
macros for conditional thread locks and lowercase functions for
non-conditional locks.  Simple, right? :).

This commit was SVN r15011.
2007-06-12 16:25:26 +00:00
Shiqing Fan
c142c23f88 Initialize req_ompi.req_status._count to be 0 before starting the request.
This commit was SVN r14861.
2007-06-05 09:50:06 +00:00
Shiqing Fan
0961669912 Spaces after backslash are removed.
This commit was SVN r14844.
2007-06-04 10:10:24 +00:00
Shiqing Fan
7bf18a4fd5 MPI_SOURCE should be initialized.
This commit was SVN r14843.
2007-06-04 09:37:21 +00:00
Sven Stork
22af6d38e6 - UNexport symbols that shouldn't be needed outside the libraries
- replace #if/#endif with BEGIN/END_C_DECLS
- reformating

This commit was SVN r14669.
2007-05-16 15:46:52 +00:00
Rainer Keller
6f9251ed39 - Small fixes by PGI -Minform=inform
This commit was SVN r14524.
2007-04-26 08:16:07 +00:00
Josh Hursey
8c2385416f Per a developer request -
Make sure that the wrapper selection is compiled out if not enabling FT. Before the 
logic would skip over it since the conditional if statements would not be satisfied, 
now there are no additional if statements when compiled out.

With this modification the selection logic looks nearly identical to pre-r14051
with the exception of the non-FT related improvements.

This commit was SVN r14491.

The following SVN revision numbers were found above:
  r14051 --> open-mpi/ompi@dadca7da88
2007-04-24 17:08:48 +00:00
Josh Hursey
fbc59f668c fix typo
This commit was SVN r14301.
2007-04-11 15:39:42 +00:00
Josh Hursey
5efae25390 No functionality changes (yet).
Just fix the indentation to meet the coding standard.

This commit was SVN r14300.
2007-04-11 15:19:51 +00:00
Josh Hursey
98fb9f26ef Some cleanup.
- Remove an old comment from crcp_base_fns.c
- Let ob1 have its very own ft_event function (which I'll fill in shortly)
- Make sure ob1 finalizes the bsend stuff so we don't leave a bunch of memory sitting around
- PML base - destruct the array upon finalize. Shrink the include search so it stops after finding a match

This commit was SVN r14222.
2007-04-05 13:52:05 +00:00
George Bosilca
f2a6b9394f Deal with the include spree. Protect "environ" on Windows.
Some others minors modifications in order to make it
compile [again] on Windows.

This commit was SVN r14188.
2007-04-01 16:16:54 +00:00
Josh Hursey
299332ecac fix small compiler warning
This commit was SVN r14097.
2007-03-21 04:44:54 +00:00
Josh Hursey
6d29146748 fix dumb logic break in the PML selection finalization
This commit was SVN r14053.
2007-03-17 16:33:43 +00:00
Josh Hursey
dadca7da88 Merging in the jjhursey-ft-cr-stable branch (r13912 : HEAD).
This merge adds Checkpoint/Restart support to Open MPI. The initial
frameworks and components support a LAM/MPI-like implementation.

This commit follows the risk assessment presented to the Open MPI core
development group on Feb. 22, 2007.

This commit closes trac:158

More details to follow.

This commit was SVN r14051.

The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
  r13912

The following Trac tickets were found above:
  Ticket 158 --> https://svn.open-mpi.org/trac/ompi/ticket/158
2007-03-16 23:11:45 +00:00
Josh Hursey
c573171b7d Mostly a cleanup commit.
- Implement the BML/r2 finialize funciton
- Cleanup the btl close routine
- Wire up a pml_base_verbose MCA parameter so you can actually watch the PML selection logic if you really want to.
- Fix a potental segfault in the selection logic.
  ompi_pointer_array_get_item() may return NULL, so we have to check for it

This commit was SVN r13734.

The following SVN revision numbers were found above:
  r2 --> open-mpi/ompi@58fdc18855
2007-02-21 16:18:43 +00:00
Brian Barrett
c00d841741 Fix hang on Cray machine introduced with r13582. The modex will never fire
when on the Cray machine (aka when the NULL GPR is in use).

This commit was SVN r13638.

The following SVN revision numbers were found above:
  r13582 --> open-mpi/ompi@041beeb1b6
2007-02-13 18:34:03 +00:00
Brian Barrett
041beeb1b6 Share currently selected PML in the modex information, then check whenever
adding new procs that the remote proc's pml is the same as our local pml.
Turns the hangs from mismatched PMLs into an abort, which is better,
I think.

This commit was SVN r13582.
2007-02-09 16:38:16 +00:00
Josh Hursey
90f449f675 fix a typo that got in there
This commit was SVN r13523.
2007-02-06 20:56:48 +00:00
Galen Shipman
ddf08cb0b3 woops..
This commit was SVN r13482.
2007-02-03 02:32:00 +00:00
Galen Shipman
a94101fa62 mostly another hack around for PML selection, allows CM be select itself if an
MTL is available, if not OB1 is used. Still prevents DR and OB1 from stomping
on each other though. 

This commit was SVN r13481.
2007-02-03 02:01:18 +00:00
Rainer Keller
3669e8921e - Fix further compiler warnings regarding initialization
and shadowing variables.

This commit was SVN r13358.
2007-01-30 06:34:38 +00:00
George Bosilca
790f175d4e Explicit conversions to make the code Windows friendly.
This commit was SVN r13266.
2007-01-24 00:50:24 +00:00
Rainer Keller
96030de97b - Initialize the size of the opal_object class.
- Use the OBJ_CLASS_INSTANCE macro to initialize classes.
   This also gets rid of several missing initialization errors.

This commit was SVN r13227.
2007-01-21 14:24:29 +00:00
Rolf vandeVaart
6a260e4a9a Fix two problems. For MPI_Buffer_detach, do not attempt to
return the buffer address from Fortran. It is not expected
behavior.  For MPI_Buffer_attach, adjust the address of
the buffer handed in so it is always aligned.  

Refs trac:750
Buffer detach reviewed by Jeff Squyres
Buffer attach alignment reviewed by George Bosilca

This commit was SVN r13205.

The following Trac tickets were found above:
  Ticket 750 --> https://svn.open-mpi.org/trac/ompi/ticket/750
2007-01-18 23:32:39 +00:00
George Bosilca
87ff2b5ce8 Cast to the correct type.
This commit was SVN r13046.
2007-01-08 22:04:01 +00:00
Brian Barrett
10af8ab454 Corrections for when threading is enabled.
Refs trac:564

This commit was SVN r12830.

The following Trac tickets were found above:
  Ticket 564 --> https://svn.open-mpi.org/trac/ompi/ticket/564
2006-12-12 18:48:42 +00:00
Brian Barrett
cf196ce420 Instead of an unknown proc list that requires ownership transfer of data (which, in turn, requires a complex series of locks to be held during the transfer), use a modex backing store with backpointers from the proc to the backing store. The proc structures no longer own the modex data, which greatly simplifies locking when an unknown proc suddenly becomes known.
Refs trac:564

This commit was SVN r12822.

The following Trac tickets were found above:
  Ticket 564 --> https://svn.open-mpi.org/trac/ompi/ticket/564
2006-12-11 21:27:30 +00:00
Ralph Castain
0a5d41857a Complete next round of message size reduction: "strip" the descriptive info from the returned values. I have now added a flag to the gpr address mode (ORTE_GPR_STRIPPED) that instructs the gpr to not include segment names or tokens in the returned gpr_value_t objects.
I found only two places that were looking at the tokens:

1. the odls - we used the tokens to separately process the globals container data from everything else. In this case, I left the subscription that returned the globals data alone, but "stripped" the subscription that returned the launch data for the procs. These subscriptions have nothing to do with the xcast message.

2. the pml_base_modex - the callback function was getting process names from the returned tokens. Actually, this function was doing a very bad thing - it was assuming that the first token returned was *always* the process name. This is currently true, but is one of those assumptions that someone could have easily changed - and suddenly found the system inexplicably failing. I modified the function to (a) get the name sent back to us, (b) "stripped" the value structures of tokens and segment strings, and (c) correctly obtained process names from the returned values. I also reindented the heck out of the code so it was legible (at least, to my old eyes).

This commit was SVN r12813.
2006-12-09 23:10:25 +00:00
Brian Barrett
98884e45e4 Clean up the way procs are added to the global process list after MPI_INIT:
* Do not add new procs to the global list during modex callback or
    when sharing orte names during accept/connect.  For modex, we
    cache the modex info for later, in case that proc ever does get
    added to the global proc list.  For accept/connect orte name
    exchange between the roots, we only need the orte name, so no
    need to add a proc structure anyway.  The procs will be added
    to the global process list during the proc exchange later in 
    the wireup process
  * Rename proc_get_namebuf and proc_get_proclist to proc_pack
    and proc_unpack and extend them to include all information
    needed to build that proc struct on a remote node (which
    includes ORTE name, architecture, and hostname).  Change
    unpack to call pml_add_procs for the entire list of new
    procs at once, rather than one at a time.
  * Remove ompi_proc_find_and_add from the public proc
    interface and make it a private function.  This function
    would add a half-created proc to the global proc list, so
    making it harder to call is a good thing.

This means that there's only two ways to add new procs into the global proc list at this time: During MPI_INIT via the call to ompi_proc_init, where my job is added to the list and via ompi_proc_unpack using a buffer from a packed proc list sent to us by someone else.  Currently, this is enough to implement MPI semantics.  We can extend the interface more if we like, but that may require HNP communication to get the remote proc information and I wanted to avoid that if at all possible.

Refs trac:564

This commit was SVN r12798.

The following Trac tickets were found above:
  Ticket 564 --> https://svn.open-mpi.org/trac/ompi/ticket/564
2006-12-07 19:56:54 +00:00
Brian Barrett
41a70a8f01 indent, this time with the right coding standards...
This commit was SVN r12787.
2006-12-07 00:24:01 +00:00
Brian Barrett
f9ec8d6f2a reindent file to make it easier to deal with...
This commit was SVN r12786.
2006-12-07 00:21:25 +00:00
Ralph Castain
6d6cebb4a7 Bring over the update to terminate orteds that are generated by a dynamic spawn such as comm_spawn. This introduces the concept of a job "family" - i.e., jobs that have a parent/child relationship. Comm_spawn'ed jobs have a parent (the one that spawned them). We track that relationship throughout the lineage - i.e., if a comm_spawned job in turn calls comm_spawn, then it has a parent (the one that spawned it) and a "root" job (the original job that started things).
Accordingly, there are new APIs to the name service to support the ability to get a job's parent, root, immediate children, and all its descendants. In addition, the terminate_job, terminate_orted, and signal_job APIs for the PLS have been modified to accept attributes that define the extent of their actions. For example, doing a "terminate_job" with an attribute of ORTE_NS_INCLUDE_DESCENDANTS will terminate the given jobid AND all jobs that descended from it.

I have tested this capability on a MacBook under rsh, Odin under SLURM, and LANL's Flash (bproc). It worked successfully on non-MPI jobs (both simple and including a spawn), and MPI jobs (again, both simple and with a spawn).

This commit was SVN r12597.
2006-11-14 19:34:59 +00:00
George Bosilca
17405cd9c6 A temporary fix, until we figure out a better approach. The problem
is that if one add "pml=" to the configuration file, really bad things
happen. All PMLs will get initialize, and each of them will initialize
all BTLs. This patch force the mca_pml_base_pml to get initialized in
all cases before we go out of the mca_pml_base_open function.

This commit was SVN r12527.
2006-11-10 04:53:00 +00:00
George Bosilca
eab1776e9a Explicit casts for our friendly Windows environment...
This commit was SVN r12496.
2006-11-08 17:02:46 +00:00
Jeff Squyres
e02114dcf3 Fixes trac:529.
* Create a new request type: NOOP (described below)
 * For all MPI_*_INIT functions, OBJ_NEW an ompi_request_t and set its
   type to NOOP
 * Ensure that the NOOP requests are OBJ_RELEASE'd when they are done
 * MPI_START looks at the request type; if NOOP, just return success. If
   not, call the PML start() function
 * MPI_STARTALL always pass the entire array of requests back to the PML
   (see next point)
 * Make the PMLs only process PML requests (i.e., ignore/skip anything
   that isn't of type PML -- such as the NOOP requests)
 * Add a little more param error checking in STARTALL

This commit was SVN r12338.

The following Trac tickets were found above:
  Ticket 529 --> https://svn.open-mpi.org/trac/ompi/ticket/529
2006-10-27 12:32:36 +00:00
George Bosilca
126a68dc9a Big datatype commit. Remove all unused features of the datatype engine. As the memory
allocation logic is completely done outside the data-type engine (in the PML) there is
no need for any special case inside the data-type engine. There is less arguments for
the ompi_convertor_pack and ompi_convertor_unpack as well (the last field free_after is
not required anymore as there is no memory allocated in the engine itself). This change
affect all components using datatypes. I test most of them, but it might happens that I
miss some ... If it's the case please let me know (don't shoot the pianist!!).

This commit was SVN r12331.
2006-10-26 23:11:26 +00:00
Rainer Keller
47b24a0603 - Now the branch is done, linearize access regarding
request handling.  Buys a little bit on IMB, no
   functional change, otherwise.

This commit was SVN r12165.
2006-10-18 16:11:50 +00:00
George Bosilca
6f5ec2390b pedantic...
This commit was SVN r12147.
2006-10-17 20:25:40 +00:00
George Bosilca
1c464d340c Do not increase the reference count for the datatype if it is not required. Plus
some typos.

This commit was SVN r11728.
2006-09-20 20:14:15 +00:00
Ralph Castain
37dfdb76eb Here is the major MAD-cure commit. I have written plenty about it, so I refer you here to those messages for a description of everything that was done.
This commit was SVN r11661.
2006-09-14 21:29:51 +00:00
George Bosilca
e33c35112b Correct the conversion between int and bool. Apply it on all files except
the one that will be modified by Ralph for the ORTE 2.0. The missing ones
are in the rsh PLS.

This commit was SVN r11476.
2006-08-28 18:59:16 +00:00
George Bosilca
3f0a7cad9e The last patch for Windows support. Mostly casting and conversion to C++ friendly headers.
This commit was SVN r11400.
2006-08-24 16:38:08 +00:00
George Bosilca
6fc16516cc orte_std_cntr_t vs. size_t round 3. I back up this one as it
wasn't suppose to be committed (and because it's wrong).

This commit was SVN r11318.
2006-08-22 15:15:09 +00:00
George Bosilca
0417d27f46 orte_std_cntr_t vs. size_t round 2. Advantage for size_t ...
This commit was SVN r11317.
2006-08-22 14:58:31 +00:00
Ralph Castain
5dfd54c778 With the branch to 1.2 made....
Clean up the remainder of the size_t references in the runtime itself. Convert to orte_std_cntr_t wherever it makes sense (only avoid those places where the actual memory size is referenced).

Remove the obsolete oob barrier function (we actually obsoleted it a long time ago - just never bothered to clean it up).

I have done my best to go through all the components and catch everything, even if I couldn't test compile them since I wasn't on that type of system. Still, I cannot guarantee that problems won't show up when you test this on specific systems. Usually, these will just show as "warning: comparison between signed and unsigned" notes which are easily fixed (just change a size_t to orte_std_cntr_t).

In some places, people didn't use size_t, but instead used some other variant (e.g., I found several places with uint32_t). I tried to catch all of them, but...

Once we get all the instances caught and fixed, this should once and for all resolve many of the heterogeneity problems.

This commit was SVN r11204.
2006-08-15 19:54:10 +00:00
Brian Barrett
2897d2ef9b * automagically select the "right" PML when direct-calling
This commit was SVN r10818.
2006-07-14 21:33:26 +00:00
Galen Shipman
6ed255f114 Substantial changes to the CM PML, allows us to have a very thin request for
all but buffered and persistent requests. Unfortunately we were note able to
reuse the pml_base_request_t as it was just too heavy for our needs. Lots of
code for 2/10 usec ;-) 

This commit was SVN r10810.
2006-07-14 19:32:26 +00:00
Galen Shipman
68ae99123d fix bsend completion..
This commit was SVN r10709.
2006-07-10 22:27:32 +00:00
George Bosilca
476c9e64df Don't keep multiples copies of the datatype and count. The only one we really need
is the one provided by the user. For the buffered send the real datatype used
for the communication is always MPI_BYTE and the count can be retrieved from
the req_bytes_packed field. This will decrease the size of the request by
one pointer and one size_t (8 bytes or 16 bytes depending on the architecture).

This commit was SVN r10680.
2006-07-06 17:58:25 +00:00
Brian Barrett
26eee59032 * turns out that you should only call bsend_request_alloc or
bsend_request_init, but not both.  Otherwise, you don't free
  some buffer space and end up leaking buffers and ending in
  badness
* since you only call alloc() or init(), but not both, need to 
  restore reference counting in init()

This commit was SVN r10674.
2006-07-06 14:02:51 +00:00