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Граф коммитов

26809 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
2f0aec709a Protect the embedded libraries when updating copyrights - we shouldn't be overwriting their copyrights with our own
bot:notest

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-18 06:45:13 -08:00
Mark Santcroos
7762c21c23 Merge pull request #3006 from rhc54/topic/lid
Support -host launch_id
2017-02-18 09:46:24 +01:00
Ralph Castain
bf0f274f06 Allow -host to look for the number of a host when running in a managed environment that supports launch id's. For example, this will allow someone who has been allocated a node of "nid0015" to refer to it with "-host 15".
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-17 18:35:54 -08:00
Ralph Castain
95bfc7b7c6 Merge pull request #2991 from jjhursey/fix/ibm/errmgr-help-msg
orte/errmgr: Improve help message on connection lost
2017-02-17 11:34:18 -08:00
Nathaniel Graham
91810173b3 Merge pull request #2993 from nrgraham23/man_page_update
Update the mpirun man page
2017-02-17 11:49:17 -07:00
Joshua Hursey
df0f8e95cd oob/tcp: Adjust TCP keepalive default values
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-17 11:02:25 -06:00
Ralph Castain
5eb3ebdf6d Merge pull request #3000 from rhc54/topic/configclean
Fix some pmix configuration code
2017-02-16 12:30:12 -08:00
Ralph Castain
f49118eaab Fix some pmix configuration code
Remove stale file reference that caused a check to always fail. Update psm2 function check to new libs

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-16 10:54:47 -08:00
Howard Pritchard
b272f87926 Merge pull request #2968 from hjelmn/pmix_cray
pmix/cray: performance improvements and cleanup
2017-02-16 11:41:59 -07:00
Todd Kordenbrock
ac3c2c5030 Merge pull request #2986 from tkordenbrock/topic/master/implement.osc.noncontig
osc-portals4: add support for noncontiguous datatypes
2017-02-16 07:32:23 -06:00
Ralph Castain
ba420758fe Merge pull request #2994 from rhc54/topic/queue
Take a shot at fixing a segfault
2017-02-15 19:29:12 -08:00
Ralph Castain
201f8571ca Ensure we retain the peer object until we are done with it, then detect that the socket has closed due to a lost connection and cleanly release the message event
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 18:30:55 -08:00
Ralph Castain
ba47f73887 Merge pull request #2992 from rhc54/topic/pe1
Fix binding policy bug and support pe=1 modifier
2017-02-15 17:58:25 -08:00
Ralph Castain
0ae873de5c Fix a bug where we failed to compute #procs for nperXXX directives, thus resulting in an incorrect default binding
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 16:32:24 -08:00
Nathaniel Graham
f9c05bdb03 Update the mpirun man page
This update should fix the mpirun man page so all
mpirun command line options are included, and
mpirun commands that have been removed are no
longer in the man page.  I also fixed some of
the file formatting, and bolding of command
parameters.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2017-02-15 17:24:28 -07:00
Ralph Castain
223495325d Fix binding policy bug and support pe=1 modifier
Allow someone to specify the "pe=N" modifier to a mapping policy when N=1. This equates to just "bind-to core", but helps people who use a script to set the PE policy. Fix a bug where setting the binding policy left a lingering "if-supported" flag that shouldn't be there.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 14:55:17 -08:00
Todd Kordenbrock
048f757d9f osc-portals4: add support for noncontiguous datatypes
This commit implements onesided operations for noncontiguous
datatypes using two different algorithms.

 * If the result and/or origin datatype is noncontiguous and the
   target datatype is contiguous, then an iovec MD is created for
   the result and origin.  The operation is performed using a
   single Portals4 call (unless it exceeds the max message size).
 * If the target datatype is noncontigous, then an algorithm
   similar to the one in osc-rdma is used to loop over the
   contiguous blocks of each datatype.  The operation is
   performed using multiple Portals4 calls.

This commit ensures that individual operations do not exceed the
max atomic size or the max message size supported by the device.

Signed-off-by: Todd Kordenbrock <thkgcode@gmail.com>
2017-02-15 16:17:13 -06:00
Joshua Hursey
c452f68495 orte/errmgr: Improve help message on connection lost
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-15 16:36:00 -05:00
Ralph Castain
578d8819cf Merge pull request #2982 from rhc54/topic/threadstop
Cleanup PMIx shutdown
2017-02-15 06:00:55 -08:00
Ralph Castain
9cd7349d7c Instead of completely free'ing the event base, pause the PMIx progress thread before tearing down the infrastructure, and then release the event base at the end of the procedure. This allows any infrastructure objects holding events to delete them prior to free'ing the event base.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 05:02:43 -08:00
Ralph Castain
f7fe2f7189 Merge pull request #2977 from rhc54/topic/spawn
Fix comm_spawn by registering nspace info only when needed
2017-02-15 04:31:54 -08:00
Gilles Gouaillardet
6ff74dde05 Merge pull request #2978 from ggouaillardet/topic/osc_sm_align
osc/sm: fix MPI_Win_allocate_shared() alignment
2017-02-15 16:21:31 +09:00
Gilles Gouaillardet
cd4537193c osc/sm: fix MPI_Win_allocate_shared() alignment
add padding so the memory allocated by MPI_Win_allocate_shared()
is 64 bytes aligned.

Thanks Joseph Schuchart for the bug report

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-15 13:40:48 +09:00
Ralph Castain
68b53e2179 Fix comm_spawn by registering nspace info only when needed - either when we have local procs, or when job-level info is required by connecting jobs
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-14 19:47:56 -08:00
Ralph Castain
404fe327be Merge pull request #2973 from rhc54/topic/cleanups
Update to newest PMIx master (includes configuration cleanups). Silence trivial Coverity warning in hwloc base.
2017-02-14 17:38:18 -08:00
Ralph Castain
0c8609ca16 Update to newest PMIx master (includes configuration cleanups). Silence trivial Coverity warning in hwloc base.
Cleanup a race condition segfault during finalize by ensuring the PMIx progress thread is stopped prior to starting to tear down the messaging components

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-14 15:14:00 -08:00
Josh Hursey
0b273c2561 Merge pull request #2808 from jjhursey/fix/ibm/reduce-local-to-coll
coll: Move reduce_local into the coll framework
2017-02-14 15:54:15 -06:00
Ralph Castain
060cc09474 Revert "orte: Fix MPI_Spawn"
This reverts commit 9f7e2098ac.
2017-02-14 13:32:28 -08:00
Josh Hursey
a17b547430 Merge pull request #2957 from jjhursey/topic/ibm/rsh-sigint-fix
plm/rsh: Fix signal handling for rsh launcher
2017-02-14 15:29:00 -06:00
Nathan Hjelm
8562b87ad3 Merge pull request #2967 from hjelmn/auto_bool
mca/base: add new base enumerator (auto_bool)
2017-02-14 12:25:56 -07:00
Nathan Hjelm
5683e7836f Merge pull request #2965 from hjelmn/deprecated_fix
mca/base: fix deprecated variable help message
2017-02-14 12:22:11 -07:00
Nathan Hjelm
1df6bdd30e schizo/alps: set orte_bound_at_launch when launched with aprun
Set the orte_bound_at_launch MCA variable. This resolves a launch
performance bug when using aprun to launch Open MPI processes. If
this variable is not set it can take minutes longer to launch with
high ppn.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 11:13:48 -07:00
Nathan Hjelm
3b912ea2a7 pmix/cray: performance improvements and cleanup
Do not use opal_output_verbose inside O(n) loops. This was causing us
to make O(n) calls to snprintf which was greatly slowing launch at
scale.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 11:13:10 -07:00
Nathan Hjelm
cc4a0fabcf Merge pull request #2727 from hjelmn/osc_rdma
osc/rdma: fix typo in check for MPI_MODE_NOCHECK
2017-02-14 10:50:33 -07:00
Nathan Hjelm
9e692ce264 mca/base: add new base enumerator (auto_bool)
This commit adds a new base enumerator type for variables that take of
the values -1, 0, and 1. These values are mapped to the strings auto,
false, true. This commit updates the mpi_leave_pinned MCA variable to
use the new enumerator.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 10:21:45 -07:00
Nathan Hjelm
33676c9960 mca/base: fix deprecated variable help message
Actually print out the original variable name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 09:55:43 -07:00
Joshua Hursey
78006f93a4 coll: Move reduce_local into the coll framework
* Since we are adding a new function to `mca_coll_base_module_2_1_0_t`
   we need to increase the version of the module structure to `2_2_0`.
 * Add a comment just above the PREDEFINED_COMMUNICATOR_PAD describing
   it's purpose and when it should change. To help future developers
   trying to answer the question noted in the comment.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-14 08:56:07 -06:00
Joshua Hursey
843fcca03c plm/rsh: Fix signal handling for rsh launcher
* Similar to the other launchers (i.e., slurm, alps) we need to put the
   children in a separate process group to prevent SIGINT (from a CTRL-C)
   from being delivered to the whole process group and prematurely
   killing the rsh/ssh connections to the remote daemons.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-14 08:54:17 -06:00
Ralph Castain
9ecfbba2a1 Merge pull request #2963 from rhc54/topic/pmixupdate
Update to lastest PMIx master
2017-02-14 05:38:32 -08:00
Ralph Castain
35578b4009 Update to lastest PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-13 23:19:26 -08:00
Ralph Castain
68a384a5fd Merge pull request #2962 from rhc54/topic/rsh
Fix plm/rsh runtime check
2017-02-13 17:48:09 -08:00
Gilles Gouaillardet
9ea743960a Merge pull request #2953 from ggouaillardet/topic/libnbc_ialltoallvw_zero
coll/libnbc: fix and optimize zero size ialltoall{v,w}
2017-02-14 10:08:56 +09:00
Ralph Castain
dee2d8646d Fix plm/rsh runtime check
Fix the check for rsh/ssh so we allow the check for SGE and LoadLeveler to occur if user doesn't specify their own launch agent. Fix a Coverity warning

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-13 16:54:03 -08:00
Gilles Gouaillardet
e70a30cca4 coll/libnbc: optimize zero size ialltoall{v,w} with MPI_IN_PLACE
and incidentally avoids malloc(0)

Thanks Lisandro Dalcin for the report

Fixes open-mpi/ompi#2945

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-13 15:21:28 +09:00
Gilles Gouaillardet
12949547f4 coll/libnbc: fix a2aw_sched_linear() with zero size datatype or zero count
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-13 15:21:28 +09:00
Gilles Gouaillardet
bf0fc4a84c opal/datatype: correctly handle zero size datatype or zero count
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-13 15:21:28 +09:00
Jeff Squyres
81e57bb7db nightly-tarball scripts: more quoting fixes
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-12 04:19:35 +00:00
Jeff Squyres
2d4fc45429 nightly-tarball scripts: fix quoting
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-11 22:40:10 +00:00
Jeff Squyres
b385ac4f09 nightly-tarball scripts: more debugging and robustness
Check the exit status of major commands, as well as (optionally)
output the pwd and command being executed (when debugging).  Also,
read the $debug variable from the environment; if it's set, go into
debugging mode (vs. requiring a modification to the script to enable
debugging mode).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-11 21:50:10 +00:00
Jeff Squyres
0178307d36 openmpi-nightly-tarball: remove spurrious echo statement
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-11 21:50:10 +00:00