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Ralph Castain
b43f760f93 If you don't specify all the rank-file mapping for all procs, then you'll segfault - which is probably a bad idea. I can't see an easy workaround, so just error out for now and let's see if anyone really cares. 
cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r32053.
 2014-06-19 20:30:06 +00:00
Ralph Castain
b618b36a2f Fix potential issue if opal_hwloc_topology is NULL 
cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r32050.
 2014-06-19 18:52:41 +00:00
Ralph Castain
61fe4daa33 Add some further debug 
Refs trac:4717

This commit was SVN r32047.

The following Trac tickets were found above:
  Ticket 4717 --> https://svn.open-mpi.org/trac/ompi/ticket/4717
 2014-06-19 15:59:51 +00:00
Ralph Castain
65275d6326 Add a little more info to the warning message - i.e., that the likely cause of the problem is missing libnumactl and/or libnumactl-devel 
cmr=v1.8.2:reviewer=miked:subject=improve memory binding failure message

This commit was SVN r32030.
 2014-06-18 19:20:28 +00:00
Ralph Castain
3f032d39e8 Mark the proc as alive so waitpid callback system doesn't immediately activate the callback 
Refs trac:4717

This commit was SVN r32026.

The following Trac tickets were found above:
  Ticket 4717 --> https://svn.open-mpi.org/trac/ompi/ticket/4717
 2014-06-18 14:04:55 +00:00
Ralph Castain
8e7c0257f0 Cleanup some missed updates to orte_wait_cb as params have changed 
Refs trac:4717

This commit was SVN r32025.

The following Trac tickets were found above:
  Ticket 4717 --> https://svn.open-mpi.org/trac/ompi/ticket/4717
 2014-06-17 23:40:31 +00:00
Ralph Castain
5dbf4a62c4 Cleanup: we were accidentally killing ourselves (bad idea) 
Refs trac:4717

This commit was SVN r32022.

The following Trac tickets were found above:
  Ticket 4717 --> https://svn.open-mpi.org/trac/ompi/ticket/4717
 2014-06-17 20:38:42 +00:00
Ralph Castain
5216bd5558 Multiple sigchld reports can occur within a single event callback, so have to reap them until none remain. Also, need to ensure the daemon is flagged as alive prior to calling wait_cb 
Refs trac:4717

This commit was SVN r32020.

The following Trac tickets were found above:
  Ticket 4717 --> https://svn.open-mpi.org/trac/ompi/ticket/4717
 2014-06-17 18:46:40 +00:00
Ralph Castain
42bf7466fc This isn't as big a change as it appears - a change in one place caused a whole bunch of files to require updated #include's due to some arcane linkage. Rework the orte_wait code to reflect the introduction of the state machine. If we are in cleanup mode and just want to kill all our local children, then there is no reason to be polite about it as that introduces *very* long delays at scale. Just kill the procs and move on. 
Refs trac:4717

This commit was SVN r32019.

The following Trac tickets were found above:
  Ticket 4717 --> https://svn.open-mpi.org/trac/ompi/ticket/4717
 2014-06-17 17:57:51 +00:00
Ralph Castain
ab52f16100 Attempt to cleanup the race condition Rolf keeps encountering in MTT by adding some protection to ensure orted's try to terminate once their local procs die. Also, fix a problem whereby a failure to comm_spawn would result in a hang of the parent process. 
cmr=v1.8.2:reviewer=rhc:subject=cache termination cleanups

This commit was SVN r32008.
 2014-06-16 20:46:35 +00:00
Ralph Castain
561983ae52 Fix static builds by renaming conflicting type 
This commit was SVN r32006.
 2014-06-14 17:39:28 +00:00
Ralph Castain
3f04d50cb0 Per the ticket, resolve our handling of overload conditions to provide a more consistent response. If we are overloaded (i.e., attempting to bind more processes to a location than the number of cpus under that location), then we consider the following conditions: 
(a) default binding policy is in effect. In this case, we will emit a
warning and default to not binding unless the user provided the
"oversubscribe" or "overload" modifier to the "bind-to" option.

(b) user-specified binding policy is in effect. In this case, we will
error out unless the user provided the "oversubscribe" or "overload"
modifier to the "bind-to" option as we cannot meet the directive.

Either "bind-to" modifier (oversubscribe or overload) will be accepted for
now - in 1.9, we will deprecate the "overload" term in favor of
"oversubscribe".

Also added the ability to accept a --bind-to modifier without specifying the binding policy itself so a user can specify overload-allowed with the default policy.

Closes trac:4345

cmr=v1.8.2:reviewer=rhc:subject=resolve handling of overload conditions

This commit was SVN r32005.

The following Trac tickets were found above:
  Ticket 4345 --> https://svn.open-mpi.org/trac/ompi/ticket/4345
 2014-06-14 15:38:32 +00:00
Ralph Castain
56c3575c0e Can't emit an error for an unrecognized mapping policy modifier as the ppr policy relies on not doing so. 
This commit was SVN r31998.
 2014-06-13 20:10:09 +00:00
Ralph Castain
3ed282bf44 Per patch from Tetsuya, correct the cpus-per-proc logic so we correctly detect when the user is attempting to bind too low for that option 
Refs trac:4702

This commit was SVN r31988.

The following Trac tickets were found above:
  Ticket 4702 --> https://svn.open-mpi.org/trac/ompi/ticket/4702
 2014-06-13 16:32:52 +00:00
Ralph Castain
ba926d8635 The TCP component will have set the hash table entry to NULL, but that doesn't remove the key. So the hash_table retrieval function will return success, but with a NULL pointer - protect against that scenario 
Patch provided by Gilles - reviewed by rhc.

RM-approved

cmr=v1.8.2:reviewer=ompi-gk1.8

This commit was SVN r31971.
 2014-06-09 17:46:22 +00:00
Ralph Castain
5d5ae41ea5 Cleanup a memory leak in the daemons - thanks to Artem for spotting it 
This commit was SVN r31970.
 2014-06-09 17:14:02 +00:00
Ralph Castain
06dbfa3098 Make the cpus-per-proc equivalent a little more intuitive: 
* allow users to specify just a modifier for map-by instead of requiring that they also specify a policy. Thus, we now accept --map-by :pe=3 as indicating that we should use the default mapping policy, but bind 3 cpus/proc.

* if users specify a pe's/proc but no policy, default to --map-by NUMA to ensure we have access to multiple cpus for the request. This won't guarantee we have access to enough to meet the request, but gives us a chance. In addition, we know that binding a proc to multiple cpus will work best if those cpus are all in the same NUMA, so this provides some degree of optimized behavior.

Per a request from Jeff, define "oversubscribe" for binding as a synonym for the "overload" modifier.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31967.
 2014-06-08 20:26:59 +00:00
Ralph Castain
8db76e9c6f Ensure that we change to the session dir if we preload binaries so we'll use the loaded one 
Special patch created for v1.8 and CMR filed

This commit was SVN r31963.
 2014-06-06 21:43:23 +00:00
Ralph Castain
b7c08582ba Add new tag to avoid conflicts 
This commit was SVN r31960.
 2014-06-06 17:23:35 +00:00
Ralph Castain
638c24f655 Correct the bind-in-place algorithm to better handle comm_spawn. If the location identified by the mapper is already occupied by procs from another job, then we need to shift either right or left until we find an unoccupied location where we can be bound. If nothing is available, then check for the overload flag (and bind us in the original location if provided), or see if this was the default binding policy instead of one specified by the user - if so, then just don't bind this process. 
cmr=v1.8.2:reviewer=rhc

This commit was SVN r31959.
 2014-06-06 12:36:14 +00:00
Gilles Gouaillardet
d26ac02b4a #if OPAL_HAVE_HWLOC protect access to orte_proc_info_t.cpuset 
Fix a bug when trunk is configured with --without-hwloc

v1.8 is safe so no cmr

This commit was SVN r31957.
 2014-06-06 07:25:39 +00:00
Ralph Castain
e21bfeadcd Now that the BTLs are moving down to OPAL and becoming available to ORTE, there no longer is a need/desire to push performance in the OOB/TCP component. So we don't need multiple modules driving NICs in parallel, and can drop all the complicated distribution logic. Fall back to the simplified single module model, but retain the ability to run that module in its own progress thread if so directed. 
This should eliminate the connectivity issues that have been reported, and will make maintenance of this component much easier.

cmr=v1.8.2:reviewer=jsquyres:subject=simplify the OOB/TCP component

This commit was SVN r31956.
 2014-06-06 02:24:17 +00:00
Ralph Castain
34cb137314 Add another attribute to the orte_proc_t area 
This commit was SVN r31953.
 2014-06-05 14:48:19 +00:00
Ralph Castain
b2413a6b88 Cannot update the proc state prior to activating the state machine as some callback functions need to compare the prior proc state against the new one. 
cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31949.
 2014-06-04 03:40:08 +00:00
Ralph Castain
b771388fa7 We really need to send *all* the daemon info whenever the daemon job has changed as new daemons need a full nidmap 
cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31948.
 2014-06-04 03:38:54 +00:00
Ralph Castain
c5384d44d7 Protect against NULL result in get_attr 
This commit was SVN r31947.
 2014-06-04 03:09:37 +00:00
Ralph Castain
8e768de317 Really should check our own node for oversubscription, not the HNP 
cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31946.
 2014-06-04 03:09:02 +00:00
Ralph Castain
5398158d5a Move fclose inside bracket to protect against NULL fp 
This commit was SVN r31945.
 2014-06-04 03:08:18 +00:00
Ralph Castain
f1978fba7c Cleanup a set of typos on the orte_get_attribute call 
This commit was SVN r31942.
 2014-06-03 20:36:38 +00:00
Ralph Castain
5668f085a3 Silence some useless warnings, and fix a missed updated in the tm plm 
This commit was SVN r31930.
 2014-06-02 17:57:56 +00:00
Ralph Castain
742c0d2284 Fix typo that would cause a segfault if orte_startup_timeout was set 
This commit was SVN r31929.
 2014-06-02 15:59:18 +00:00
Ralph Castain
7df500ecf5 Break the loop caused by retrying to send a message to a hop that is unknown by the TCP oob component. We attempt to provide a way for other components to try, but need to mark that the TCP component is not able to reach that process so the OOB base will know to give up. 
This commit was SVN r31928.
 2014-06-02 15:00:33 +00:00
Ralph Castain
03234f2a33 Revert r31926 and replace it with a more complete checking of availability and accessibility of the required freq control paths. 
This commit was SVN r31927.

The following SVN revision numbers were found above:
  r31926 --> open-mpi/ompi@9779084352
 2014-06-02 14:34:00 +00:00
Gilles Gouaillardet
9779084352 orte_rtc_base_select: skip a RTC module if it has a zero priority 
This commit was SVN r31926.
 2014-06-02 07:16:41 +00:00
Ralph Castain
65a35d92ef Cleanup compile issues - missing updates to some plm components and the slurm ras component 
This commit was SVN r31921.
 2014-06-01 17:59:06 +00:00
Ralph Castain
2c3d07db24 Cleanup the test so it is MPI correct 
This commit was SVN r31919.
 2014-06-01 17:57:36 +00:00
Ralph Castain
8736a1c138 Per RFC: 
http://www.open-mpi.org/community/lists/devel/2014/05/14822.php

Revamp the ORTE global data structures to reduce memory footprint and add new features. Add ability to control/set cpu frequency, though this can only be done if the sys admin has setup the system to support it (or you run as root).

This commit was SVN r31916.
 2014-06-01 16:14:10 +00:00
Ralph Castain
cf2c7381d0 Replace the PML barrier with an RTE barrier for now until we can come up with a better solution for connectionless BTLs. 
Refs trac:4643

This commit was SVN r31915.

The following Trac tickets were found above:
  Ticket 4643 --> https://svn.open-mpi.org/trac/ompi/ticket/4643
 2014-06-01 16:08:56 +00:00
Ralph Castain
1107f9099e Per the RFC issued here: 
http://www.open-mpi.org/community/lists/devel/2014/05/14827.php

Refactor PMI support

This commit was SVN r31907.
 2014-06-01 04:28:17 +00:00
Nathan Hjelm
041b72b0cc plm/alps: better workaround for the noisy cray pmi implementation 
This commit is a slightly better workaround to prevent mesages of
the form:
[unset]:_pmi_alps_get_apid:alps_app_lli_put_request failed
[unset]:_pmi_alps_get_appLayout:pmi_alps_get_apid returned with error: Bad file descriptor

It works by completely disabling PMI in the application process when using
mpirun. This should not be an issue for any apps.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31882.
 2014-05-22 16:04:36 +00:00
Oscar Vega-Gisbert
83bdebbf81 Java bindings for OSHMEM. 
This commit was SVN r31810.
 2014-05-18 21:48:09 +00:00
Nathan Hjelm
73bfecd650 More leak fixes. 
Two leaks are fixed in this commit:

 - Do not leak btl component list items.

 - Do not leak the nodename when decoding the pidmap.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31779.
 2014-05-15 16:38:13 +00:00
Nathan Hjelm
59d09ad9de orte: fix several small memory leaks 
grpcomm: fix memory leaks

We were leaking the caddy object used to pass data to the callback
function. This commit fixes these leaks.

oob,rml: fix memory leaks

This commit fixes several leaks:

 - Both the oob/base and oob/tcp were leaking objects on their peer
   hash tables. Iterate on the hash tables and free any objects.

 - Leaked sent messages because of missing OBJ_RELEASE. I placed the
   release in ORTE_RML_SEND_COMPLETE to catch all the possible
   paths.

ess/base: close the state framework

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31776.
 2014-05-15 15:06:27 +00:00
Gilles Gouaillardet
5b9364fc12 Fix a memory leak in orte_register_params() 
mca_base_var_register (..., MCA_BASE_VAR_TYPE_STRING, ...)
will dup() the orte_set_slots string, so there is no need
to do this in the first place.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31773.
 2014-05-15 10:31:19 +00:00
Gilles Gouaillardet
5f82c391a6 Fix memory leaks in orte/util/nidmap.c 
This patch fixes four memory leaks in orte/util/nidmap.c :
 - hwloc_get_root_obj(opal_hwloc_topology)->userdata was never freed
 - even if bo->bytes is freed in the decode, bo was not freed
 - a job list is populated but never used nor freed

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31770.
 2014-05-15 08:28:53 +00:00
Ralph Castain
ad0e8f841d Just pick a module to handle the incoming connection if no direct interface is identified. Siegmar hit it because his IP/netmask is disjoint, but a router was able to make the connection. 
Refs trac:4627

This commit was SVN r31763.

The following Trac tickets were found above:
  Ticket 4627 --> https://svn.open-mpi.org/trac/ompi/ticket/4627
 2014-05-14 19:23:02 +00:00
Ralph Castain
e605e73379 Close the incoming socket if we aren't going to accept it 
cmr=v1.8.2:reviewer=rhc

This commit was SVN r31759.
 2014-05-14 16:51:59 +00:00
Ralph Castain
3a1c2fff3e Correct a misplaced bracket - daemons shouldn't be doing app-related operations 
This may need a patch for 1.8.2, but we can try to directly apply it

cmr=v1.8.2:reviewer=hjelmn

This commit was SVN r31754.
 2014-05-14 15:23:30 +00:00
Nathan Hjelm
2a57e71a47 plm/alps: fix typo introduced in r31589 
This commit was SVN r31747.

The following SVN revision numbers were found above:
  r31589 --> open-mpi/ompi@445b552d3a
 2014-05-13 22:36:54 +00:00
Ralph Castain
f55c587a74 Per patch from Tetsuya Mishima, ensure the rank_file mapper accurately tracks number of nodes in the map 
Refs trac:4594

This commit was SVN r31725.

The following Trac tickets were found above:
  Ticket 4594 --> https://svn.open-mpi.org/trac/ompi/ticket/4594
 2014-05-13 14:36:25 +00:00