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9097 Коммитов

Автор SHA1 Сообщение Дата
Nathan Hjelm
1da558407c Merge pull request #1911 from hjelmn/threads
opal/thread: clean up and add additional OPAL_THREAD macros
2016-07-29 06:44:11 -06:00
Gilles Gouaillardet
9f3e1a0620 Merge pull request #1898 from ggouaillardet/topic/poc_configury_cli
configury: capture configury command line
2016-07-29 11:55:21 +09:00
Howard Pritchard
5ff6b81eee Merge pull request #1871 from hppritcha/topic/ofi_mtl_params
mtl/ofi: add some more mca parameters
2016-07-28 18:21:23 -06:00
Gilles Gouaillardet
273e56096b configury: capture configury command line
configury command line is quoted and made available via the OPAL_CONFIGURE_CLI macro.
it can be retrieved via {orte-info,ompi_info,oshmem_info} -c, or
{orte-info,ompi_info,oshmem_info} --all --parseable | grep ^config:cli:
2016-07-29 09:14:09 +09:00
Ralph Castain
cacb582ecd Support timeout values when performing connect/accept operations. Bump default timeout to 10 minutes so folks have time to start the partnering application 2016-07-28 14:09:06 -07:00
Nathan Hjelm
aac611237b opal/thread: clean up and add additional OPAL_THREAD macros
This commit expands the OPAL_THREAD macros to include 32- and 64-bit
atomic swap. Additionally, macro declararations have been updated to
include both OPAL_THREAD_* and OPAL_ATOMIC_*. Before this commit the
former was used with add and the later with cmpset.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-07-28 09:23:14 -06:00
Howard Pritchard
22c8743557 mtl/ofi: add some more mca parameters
allow for toggling of both control/data progress models.
allow for using FI_AV_TABLE or FI_AV_MAP for av type.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-07-28 02:35:09 -06:00
Gilles Gouaillardet
a0a999e63d coll/base: fix ompi_coll_base_allgatherv_intra_basic_default() with MPI_IN_PLACE 2016-07-28 13:57:18 +09:00
Gilles Gouaillardet
b8a1ffb87e coll/base: fix ompi_coll_base_allgatherv_intra_basic_default()
Fixes open-mpi/ompi#1907
2016-07-28 13:50:04 +09:00
Jeff Squyres
2e0c3c7d77 libompitrace: explicitly set the .so version
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-07-27 07:05:58 -04:00
Ralph Castain
9ab20cafe3 Pass the nodeid for each proc in the job. Fix a mistaken error output message 2016-07-25 15:41:15 -07:00
Gilles Gouaillardet
bbc6d4b3d4 ompi/communicator: remove an other debug print statement in ompi_comm_allreduce_intra_pmix_nb() 2016-07-22 15:42:56 +09:00
Edgar Gabriel
a899c0fb38 fcoll/static: fix coverty warnings
fix coverty warnings CID 72144, CID 710677, CID 1364164
2016-07-21 13:08:15 -05:00
Todd Kordenbrock
37ad6aa711 Merge pull request #1853 from PDeveze/Patchs-on-osc-portals4
Patchs on osc portals4
2016-07-20 09:22:19 -05:00
Todd Kordenbrock
210534adb3 Merge pull request #1850 from PDeveze/Patchs-on-mtl-portals4
Patchs on mtl portals4
2016-07-20 08:21:03 -05:00
rhc54
4bc5048608 Merge pull request #1888 from rhc54/topic/pmixup
Update pmix2 component
2016-07-20 06:14:05 -07:00
Ralph Castain
01a653d50a Remove a debug print in comm_cid.c. Update PMIx2 to include the revised PMIx_Get logic for higher performance by reducing the number of hash table lookups. Fix a bug where requests for data from a proc in another nspace could hang, or result in "not found".
Remove stale file reference

Restore autogen pass thru pmix

Remove generated file
2016-07-20 00:58:19 -07:00
Gilles Gouaillardet
252fadf099 ompi: fix #if vs #ifdef HAVE___MALLOC_INITIALIZE_HOOK usage 2016-07-20 13:18:11 +09:00
Ralph Castain
36a9063466 Silence warnings 2016-07-19 17:36:13 -07:00
Nathan Hjelm
40f71f2d7a Merge pull request #1873 from hjelmn/comm_split_update
Improve MPI_Comm_split_type scalability
2016-07-19 14:36:44 -06:00
Nathan Hjelm
5edab9cb22 Merge pull request #1855 from hjelmn/comm_rework
ompi/comm: refactor communicator cid code
2016-07-19 10:04:17 -06:00
Pascal Deveze
9cac32ba6a mtl/portals4: Modifications concerning the short message management 2016-07-19 11:21:50 +02:00
Pascal Deveze
49e9936914 mtl/portals4: Some little patches 2016-07-19 11:18:55 +02:00
Nathan Hjelm
ced853476f Merge pull request #1878 from hjelmn/f_rops
ompi/fortran: fix typos in request RMA bindings
2016-07-18 13:48:41 -06:00
Nathan Hjelm
8bdcb40dc4 ompi/fortran: fix typos in request RMA bindings
This commit fixes typos on the C side of the request-based RMA binding. We
were not returning the request on success but on failure. Thanks to
@alazzaro for reporting and @ggouaillardet, and @vondele for tracking
this down.

Fixes part of open-mpi/ompi#1869

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-07-18 13:46:28 -06:00
Nathan Hjelm
4c49c42dd0 ompi/comm: improve comm_split_type scalability
This commit introduces a new algorithm for MPI_Comm_split_type. The
old algorithm performed an allgather on the communicator to decide
which processes were part of the new communicators. This does not
scale well in either time or memory.

The new algorithm performs a couple of all reductions to determine the
global parameters of the MPI_Comm_split_type call. If any rank gives
an inconsistent split_type (as defined by the standard) an error is
returned without proceeding further. The algorithm then creates a
communicator with all the ranks that match the split_type (no
communication required) in the same order as the original
communicator. It then does an allgather on the new communicator (which
should be much smaller) to determine 1) if the new communicator is in
the correct order, and 2) if any ranks in the new communicator
supplied MPI_UNDEFINED as the split_type. If either of these
conditions are detected the new communicator is split using
ompi_comm_split and the intermediate communicator is freed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-07-18 12:47:05 -06:00
Nathan Hjelm
035c2e2e2a ompi/comm: refactor communicator cid code
This commit simplifies the communicator context ID generation by
removing the blocking code. The high level calls: ompi_comm_nextcid
and ompi_comm_activate remain but now call the non-blocking variants
and wait on the resulting request. This was done to remove the
parallel paths for context ID generation in preperation for further
improvements of the CID generation code.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-07-18 12:47:05 -06:00
Pascal Deveze
f19a2b961c osc/portals4: Correct an error in an if statement 2016-07-18 13:16:12 +02:00
Pascal Deveze
81823d7a63 osc/portals4: Store the no_locks parameter in osc_portals4_component.no_locks 2016-07-18 11:51:52 +02:00
Pascal Deveze
76b38651da osc/portals4: For the contiguous datatype, take into account the lower bound before calling portals4 2016-07-18 11:20:50 +02:00
Pascal Deveze
7aaf16e7fe osc/portals4: Put/Get splitting because Portals4 may restrict sizes 2016-07-18 10:49:28 +02:00
Pascal Deveze
025201b459 osc/portals4: set the initial value of req_status.MPI_ERROR to MPI_SUCCESS 2016-07-18 09:52:56 +02:00
Pascal Deveze
aa0d687a0a osc/portals4: Display an ouput message if ompi_osc_portals4_get_dt() or ompi_osc_portals4_get_op() returns an error 2016-07-18 09:52:56 +02:00
Pascal Deveze
c4181909a4 osc/portals4: Be sure that the ME are operationnal (wait for the PTL_EVENT_LINK) 2016-07-18 09:52:56 +02:00
Pascal Deveze
e99e7d08ed osc/portals4: For the ME, use the uid from PtlGetUid instead of PTL_UID_ANY 2016-07-18 09:52:56 +02:00
Pascal Deveze
56b36eeb7e osc/portals4: Format of "target_disp" is OPAL_PTRDIFF_TYPE and %lu is the appropriate format to display it. 2016-07-18 09:52:55 +02:00
Pascal Deveze
a76566c754 osc/portals4: To allocate a PT, use REQ_OSC_TABLE_ID and test that the right ID is allocated 2016-07-18 09:52:55 +02:00
Edgar Gabriel
195ec89732 fcoll/base: mv coll_array functionis to fcoll base
the coll_array functions are truly only used by the fcoll modules, so move
them to fcoll/base. There is currently one exception to that rule (number of aggreagtors
logic), but that function will be moved in a long term also to fcoll/base.
2016-07-14 08:41:14 -05:00
Edgar Gabriel
1f1504ebbb remove some unused code 2016-07-14 08:41:14 -05:00
Joshua Ladd
06930a0423 Merge pull request #1840 from artpol84/yalla_perf_fix
pml/yalla: fix yalla performance regression
2016-07-14 10:55:30 +03:00
Gilles Gouaillardet
c3c262b3a8 ompi/group: get rid of malloc(0) in ompi_group_intersection(...)
Thanks Lisandro Dalcin for the report

Fixes open-mpi/ompi#1866
2016-07-14 11:19:46 +09:00
Pascal Deveze
b87ed1ad4a mtl/portals4: Display actual limits given by the portals4 PtlNIInit function 2016-07-12 15:07:31 +02:00
Pascal Deveze
f666b0d9aa mtl/portals4: Allocate a PT with the PTL_PT_FLOWCTRL flag only if OMPI_MTL_PORTALS4_FLOW_CONTROL is set 2016-07-12 15:07:31 +02:00
Pascal Deveze
bed572cd6c mtl/portals4: Unlink the ME first, then free the CT and at the end free the PT 2016-07-12 15:07:30 +02:00
Ralph Castain
0e433eaa78 Silence warning 2016-07-11 19:43:02 -07:00
Nathan Hjelm
b47208e909 osc/rdma: fix bug in CAS
This commit fixes a bug in the RDMA compare-and-swap implementation
that caused the origin value to always be written even if the compare
should have failed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-07-11 09:54:23 -06:00
Edgar Gabriel
c8b1c6cae1 Merge pull request #1856 from edgargabriel/pr/zero-size-iread-iwrite
io/ompio: fix the request in case of a zero size write/read operation
2016-07-11 08:19:02 -05:00
Gilles Gouaillardet
14624506df coll/libnbc: do not exchange data between roots in ompi_coll_libnbc_ireduce_scatter_inter()
this is now useless since the scatter is done via the local communicator
2016-07-11 17:18:30 +09:00
Edgar Gabriel
3dd81e9e09 io/ompio: fix the request in case of a zero size write/read operation 2016-07-08 14:11:22 -05:00
Gilles Gouaillardet
a55d57406b coll/base: fix non zero lower bound datatype handling in mca_coll_base_alltoallv_intra_basic_inplace() 2016-07-08 16:55:26 +09:00