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Граф коммитов

8121 Коммитов

Автор SHA1 Сообщение Дата
bosilca
1b8556f926 Merge pull request #653 from hjelmn/moar_ob1_fixes
pml/ob1: fix bugs in static request objects
2015-06-24 14:28:11 -07:00
Nathan Hjelm
458cd9d611 Merge pull request #629 from hjelmn/aint_math
Add support for MPI-3.1 MPI_Aint functions
2015-06-24 10:52:44 -07:00
Nathan Hjelm
6dd9658d73 man: remove F77 notes from MPI_Aint_add/MPI_Aint_diff man pages
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-24 11:49:48 -06:00
Jeff Squyres
258d1aa160 mpi-f08: corrections to new MPI_Aint_* subroutines
(cherry picked from commit 8f252e65b02bfe20cacee0ece8c835246eea3bd9)
2015-06-24 10:42:01 -07:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Nathan Hjelm
9a8a87611e pml/ob1: fix bugs in static request objects
This commit fixes several bugs in the static request objects used by
ob1 for blocking send/receive operations.

 - Fix memory leak when using MPI_THREAD_MULTIPLE. Requests were
   allocated off the free list but were destructed and NOT returned.

 - Fix double-destruct of static objects. There is no reason to
   CONSTRUCT/DESTUCT the static object for each send/receive
   operation. This adds overhead and no benefit. To keep the code
   clean helper functions have been added to finalize ob1 send/receive
   requests.

 - Remove now unnecessary include of alloca.h.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-23 11:00:45 -06:00
Nathan Hjelm
ac51acb3e1 Merge pull request #651 from hjelmn/fix_thread_multiple_check
pml/ob1: do not use OPAL_ENABLE_MULTI_THREADS to determine thread multiple support
2015-06-22 21:45:43 -06:00
Nathan Hjelm
284dd6babe pml/ob1: do not use OPAL_ENABLE_MULTI_THREADS to determine thread multiple support
OPAL_ENABLE_MULTI_THREADS is always on. The correct value to check is
OMPI_ENABLE_THREAD_MULTIPLE.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-22 19:17:23 -06:00
Andrew Friedley
2c9be59b37 Add new PSM2 MTL.
This new MTL runs over PSM2 for Omni Path.  PSM2 is a descendant of PSM
with changes to support more ranks and some MPI-3 features like mprobe.

PSM2 will only support Omni Path networks; PSM only supports True Scale.
Likewise, the existing PSM MTL will continue to be maintained for True
Scale, while the PSM2 MTL is developed and maintained for Omni Path.
2015-06-22 07:55:46 -07:00
Gilles Gouaillardet
0bd765eddd fix NBC_Copy for legitimate zero size messages
this fixes a regression from open-mpi/ompi@9a70765f27
2015-06-22 09:51:25 +09:00
Edgar Gabriel
dedeee9771 finishing the changes for the non-blocking and split cpllective I/O operations. Everything except for the
interface changes to the io framework is done.
2015-06-18 06:22:41 -05:00
Edgar Gabriel
3b11a8b61c making the current work compile. 2015-06-18 05:56:51 -05:00
Edgar Gabriel
cc219281ba checkpoint of the current work, since I need to resync wioth master to fix the compilation problems 2015-06-18 05:20:07 -05:00
Edgar Gabriel
100515e321 remove split collective interfaces from fcoll and their fake implemenations. Not required anymore 2015-06-18 05:20:07 -05:00
Edgar Gabriel
19cac73a9b first part of the changes trequired to support non-blocking colelctive io operations 2015-06-18 05:20:07 -05:00
Gilles Gouaillardet
0f08070a1c ompio: fix misc memory leaks
as identified by Coverity with CIDs 72147-72149, 731275 and 1269872
2015-06-17 11:17:54 +09:00
Gilles Gouaillardet
0f17cdfc57 fcoll: fix misc memory leaks
as reported by Coverity with CIDs 72293,72294 and 1269894
2015-06-17 11:17:52 +09:00
Nathan Hjelm
c33b786dd9 Merge pull request #620 from hjelmn/ompi_coverity
ompi coverity fixes
2015-06-16 06:10:40 -06:00
rhc54
9a8bda0b72 Merge pull request #637 from jithinjosepkl/pr/pml-cm-opt
pml-cm bug fixes
2015-06-15 19:25:09 -07:00
rhc54
ea78f8226d Merge pull request #631 from jsquyres/pr/remove-embedded-libfabric
remove embedded libfabric
2015-06-15 18:14:33 -07:00
Jithin Jose
7ccde09a09 Do opal_convertor_copy_and_prepare_for_send for buffered send mode as
MCA_PML_CM_HVY_SEND_REQUEST_BSEND_ALLOC calls opal_convertor_pack
directly.

Signed-off-by: Jithin Jose <jithin.jose@intel.com>
2015-06-15 17:12:50 -07:00
Howard Pritchard
224f97b009 mpi/java: suppress common symbols warning
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-06-15 17:13:40 -06:00
Jeff Squyres
cc66745e7a mtl/ofi: convert to use external libfabric
Use the new OPAL_CHECK_LIBFABRIC macro.
2015-06-15 15:17:06 -07:00
Gilles Gouaillardet
ee3a1da28a pml/ob1:mca_pml_ob1_recv_request_put_frag silence a warning
proc local variable is used only in heterogeneous mode
2015-06-15 10:00:53 +09:00
George Bosilca
67b70bb47a Add multi-threaded support. 2015-06-12 14:22:17 -07:00
George Bosilca
b2cf74cabc A first cut at a possible solution for the missing requests
from the message queues (a debugging feature). With this approach
all blocking (single threaded) requests are allocated from the main
freelist, so they will be accounted for during the message queues
investigation).
2015-06-12 14:22:17 -07:00
Ryan Grant
eec120678c Merge pull request #614 from tkordenbrock/topic/portals4.triggered.collectives
coll-portals4: implement collective operations using Portals4 triggered operations
2015-06-11 08:20:55 -06:00
Jithin Jose
7cfbfc4c89 Initialize convertor in pml-cm-send and recv.
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
2015-06-10 09:39:31 -07:00
Jeff Squyres
fbaf6888f8 ompi/include/Makefile.am: rm mpi_portable_platform.h first
We've seen this a few times (e.g.,
http://www.open-mpi.org/community/lists/users/2015/06/27057.php
reported via @siegmargross).  I'm not entirely sure why it happens --
the best I can come up with is a poorly-synchronized network
filesystem and/or a bug in "make".  For example: this code hasn't
changed in forever, and it only happens to users *sometimes*.

Regardless, avoid the error altogether by removing the file before
making the sym link (it should be a sym link anyway -- if there's
something there, it should be safe to remove it before we re-create
the sym link that should be there in the first place).

(cherry picked from commit 0edd265ea045e649c9489e3cb8fdb657800d95c3)
2015-06-09 17:59:32 -07:00
Todd Kordenbrock
b725186768 mtl-portals4: Verify the result of PtlPTAlloc()
The Portals4 MTL allocates two Portals IDs requesting specific
well-known IDs and assumes that those IDs are allocated.  If those IDs
are in use, PtlPTAlloc() will allocate a different ID.  This commit
verifies that the requested IDs were allocated.
2015-06-09 14:43:50 -05:00
Nathan Hjelm
090922887b win_get_attr: fix coverity issues
CID 71734 Self assignment (NO_EFFECT)

This code has no effect. The original author of the offending code
does not remember why the self-assignment is there. Fortran
MPI_Win_get_attr tests are working with or without it so remove the
code.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-06-09 09:34:26 -06:00
Nathan Hjelm
062de45899 Add support for MPI-3.1 MPI_Aint functions
This commit adds support for MPI_Aint_add and MPI_Aint_diff. These
functions are implemented as macros in C (explicitly allowed by
MPI-3.1). The fortran implementations are a similar mess to the
MPI_Wtime implementations.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-06-09 09:31:33 -06:00
Jeff Squyres
347290f785 pml/Makefile.am: add missing file to $(headers) 2015-06-02 20:07:54 -07:00
Gilles Gouaillardet
bf38f82dc2 MPI_Win_{get,set}_info: add missing files
fixes commit open-mpi/ompi@558d34a5c3
2015-06-03 09:04:04 +09:00
Gilles Gouaillardet
7179d442c0 MPI_Win_{attach,detach}: add missing files
fixes commit open-mpi/ompi@9600e2bc63
2015-06-03 09:02:50 +09:00
Gilles Gouaillardet
1d8ce96305 MPI_Win_Create_dynamic: add missing files
fixes commit open-mpi/ompi@f45244d5a5
2015-06-03 09:00:04 +09:00
Jeff Squyres
a55eb5e2c6 Merge pull request #602 from jithinjosepkl/pr/pml-cm-opt
Optimizations to PML-CM
2015-06-02 13:47:10 -05:00
Todd Kordenbrock
a274d2795c coll-portals4: implement collective operations using Portals4 triggered operations
This commit implements the reduce, allreduce, barrier and bcast
collective operations using Portals4 triggered operations.
2015-06-02 11:41:19 -05:00
Nathan Hjelm
69a0e1dd08 comm: fix coverity issues
CID 1269683 Unchecked return value (CHECKED_RETURN)
CID 1269684 Unchecked return value (CHECKED_RETURN)

Use ompi_comm_rank instead of MPI_Comm_rank here. There is no reason to
be using the MPI interface over the internal interface. This should clear
up these issues.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-02 09:40:26 -06:00
Nathan Hjelm
632f829eb7 mpit: fix coverity issues
CID 1047284 Uninitialized scalar variable (UNINIT)
CID 1047285 Uninitialized scalar variable (UNINIT)
CID 1047286 Uninitialized scalar variable (UNINIT)

If a performance variable session has no handles we should be returning MPI_SUCCESS
for MPI_T_pvar_start, MPI_T_pvar_stop, and MPI_T_pvar_reset. The code was returning
an unitialized value. This commit also updates the error code to return the proper
error on failure.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-02 09:15:53 -06:00
Nathan Hjelm
472e5635c7 topo/base: fix coverity issue
CID 1295340 Unchecked return value (CHECKED_RETURN)

Check the return code of mca_base_framework_open. If the call fails for some reason
the component array will not be properly defined. This will cause issues in
mca_topo_base_find_available.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-06-02 08:59:15 -06:00
Gilles Gouaillardet
558d34a5c3 MPI_Win_{get,set}_info : add Fortran bindings 2015-06-02 17:45:52 +09:00
Gilles Gouaillardet
9600e2bc63 MPI_Win_{attach,detach} : add Fortran bindings 2015-06-02 17:45:44 +09:00
Gilles Gouaillardet
f45244d5a5 MPI_Win_create_dynamic : add Fortran bindings 2015-06-02 17:45:32 +09:00
Nathan Hjelm
b1c100c402 win_get_info: fix indentation
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-29 10:16:25 -06:00
Nathan Hjelm
61fe2cc629 win: add support for returning non_locks info key
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-29 08:35:01 -06:00
Edgar Gabriel
aa72e5b2ca fix the selection logic to not overwrite on the new aggregator side the list of
aggregators determined by the algorithm.
2015-05-27 22:35:45 -05:00
Jithin Jose
5ba5a9ade2 Offset buffer by datatype true_lb to handle resized datatypes.
- Follow up patch for 56869bff38

Signed-off-by: Jithin Jose <jithin.jose@intel.com>
2015-05-27 13:51:05 -07:00
Jithin Jose
c745854d9b Avoid opal_convertor_pack for contigous data types in MXM mtl
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
2015-05-27 11:09:25 -07:00
Jithin Jose
07043894bd Avoid extra lookup for ompi_proc in homogenous build
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
2015-05-26 21:42:42 -07:00