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Автор SHA1 Сообщение Дата
Gilles Gouaillardet
c3c262b3a8 ompi/group: get rid of malloc(0) in ompi_group_intersection(...) 
Thanks Lisandro Dalcin for the report

Fixes open-mpi/ompi#1866
 2016-07-14 11:19:46 +09:00
Ralph Castain
1ceb35ba5c Fix singletons - do not include the PMIx tool URI in the environment provided to child processes 2016-07-13 17:33:34 -07:00
rhc54
2414244171 Merge pull request #1872 from rhc54/topic/continuous 
Add support for continuously operating applications
 2016-07-13 15:29:31 -07:00
Ralph Castain
20a91c2baf Add a new --continuous flag to mpirun that directs ORTE to let a job continue running as app procs terminate. Don't attempt to restart them. Add event notification of abnormally terminating procs, and demonstrate that in the mpi_spin test program. 
Cleanup debug message
 2016-07-13 15:28:33 -07:00
Jeff Squyres
0d1afba640 Merge pull request #1867 from hpcraink/pr/shmem_fixes 
Fixes to shmem
 2016-07-13 08:52:25 -04:00
Rainer Keller
3ec1b868d1 Fix missing include and missing MCA_SPML_CALL. 2016-07-13 11:23:47 +02:00
Rainer Keller
997a00c06f Correct "configure --help" output and amend the default setting if user 
provides a wrong input value, like "runtime"
(which works for MPI, but not for OSHMEM)
 2016-07-13 11:23:07 +02:00
Jeff Squyres
e28951e738 Merge pull request #1863 from jsquyres/pr/specfile-fortran-flags-fix 
openmpi.spec: don't export FFLAGS
 2016-07-12 17:23:42 -04:00
Jeff Squyres
48938f542c openmpi.spec: don't export FFLAGS 
The Open MPI configure script has long-since only paid attention to
FCFLAGS.  Indeed, it will warn if you set FFLAGS or F77FLAGS.  So
remove them from the spec file.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-07-12 14:22:20 -07:00
rhc54
cc2a648124 Merge pull request #1862 from rhc54/topic/mapping 
Fix a bug in the handling of nper<foo> when -host or -hostfile was gi…
 2016-07-12 10:40:28 -07:00
Ralph Castain
aa78f902f2 Add some missing info to the job map so remote procs get their app_rank 2016-07-12 09:50:12 -07:00
Ralph Castain
ddd0d05de3 Fix a bug in the handling of nper<foo> when -host or -hostfile was given. Correctly mark slots as "given" when we auto-assign them. Ensure we don't set the number of procs when using nper<foo> so the PPR mapper can correctly assing them. 2016-07-12 09:27:02 -07:00
Pascal Deveze
b87ed1ad4a mtl/portals4: Display actual limits given by the portals4 PtlNIInit function 2016-07-12 15:07:31 +02:00
Pascal Deveze
f666b0d9aa mtl/portals4: Allocate a PT with the PTL_PT_FLOWCTRL flag only if OMPI_MTL_PORTALS4_FLOW_CONTROL is set 2016-07-12 15:07:31 +02:00
Pascal Deveze
bed572cd6c mtl/portals4: Unlink the ME first, then free the CT and at the end free the PT 2016-07-12 15:07:30 +02:00
Ralph Castain
0e433eaa78 Silence warning 2016-07-11 19:43:02 -07:00
Gilles Gouaillardet
a27ced0966 configury: fix typos in {ompi,opal}_setup_cxx 2016-07-12 10:09:32 +09:00
Nathan Hjelm
34b0a4fc78 Merge pull request #1859 from hjelmn/rdma_fixes 
osc/rdma: fix bug in CAS
 2016-07-11 11:43:39 -06:00
Nathan Hjelm
b47208e909 osc/rdma: fix bug in CAS 
This commit fixes a bug in the RDMA compare-and-swap implementation
that caused the origin value to always be written even if the compare
should have failed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-07-11 09:54:23 -06:00
Artem Polyakov
44f01b437d Merge pull request #1858 from artpol84/fix_pmix_slurm 
opal/pmix: add blocking fence to SLURM components
 2016-07-11 21:28:25 +06:00
Edgar Gabriel
c8b1c6cae1 Merge pull request #1856 from edgargabriel/pr/zero-size-iread-iwrite 
io/ompio: fix the request in case of a zero size write/read operation
 2016-07-11 08:19:02 -05:00
Gilles Gouaillardet
14624506df coll/libnbc: do not exchange data between roots in ompi_coll_libnbc_ireduce_scatter_inter() 
this is now useless since the scatter is done via the local communicator
 2016-07-11 17:18:30 +09:00
Artem Polyakov
72585a905f opal/pmix: add blocking Fence to SLURM components. 
Blocking fence is used in yalla del proc. Native pmix exposes this functionality.
We need to expose it for SLURM's s1/s2 components as well.

Also this commit fixes uninitialized `rc` in fencenb's of both
components.
 2016-07-11 09:43:15 +03:00
Edgar Gabriel
3dd81e9e09 io/ompio: fix the request in case of a zero size write/read operation 2016-07-08 14:11:22 -05:00
Gilles Gouaillardet
a55d57406b coll/base: fix non zero lower bound datatype handling in mca_coll_base_alltoallv_intra_basic_inplace() 2016-07-08 16:55:26 +09:00
Gilles Gouaillardet
7b8094aac1 coll/base: silence misc warning 
as reported by Coverity with CIDs 1363349-1363362

Offset temporary buffer when a non zero lower bound datatype is used.

Thanks Hristo Iliev for the report

(cherry picked from commit 0e393195d9)
 2016-07-08 13:06:26 +09:00
Gilles Gouaillardet
678d08647b coll/libnbc: various fixes 
- correctly handle non commutative operators
 - correctly handle non zero lower bound ddt
 - correctly handle ddt with size > extent
 - revamp NBC_Sched_op so it takes two buffers and matches ompi_op_reduce semantic
 - various fix for inter communicators

Thanks Yuki Matsumoto for the report
 2016-07-07 15:55:49 +09:00
Gilles Gouaillardet
3e559a14a9 coll/inter: fix non standard ddt handling 
- correctly handle non zero lower bound ddt
 - correctly handle ddt with size > extent

Thanks Yuki Matsumoto for the report
 2016-07-07 15:49:59 +09:00
Gilles Gouaillardet
488d037d51 coll/basic: fix non standard ddt handling 
- correctly handle non zero lower bound ddt
 - correctly handle ddt with size > extent

Thanks Yuki Matsumoto for the report
 2016-07-07 15:49:53 +09:00
Gilles Gouaillardet
c06fb04a9a coll/base: fix non zero lower bound ddt handling in ompi_coll_base_reduce_intra_basic_linear() 
Thanks Yuki Matsumoto for the report
 2016-07-07 15:49:48 +09:00
Artem Polyakov
8e16f47492 Merge pull request #1688 from artpol84/fix_base64 
Fix base64 implementation in pmix framework.
 2016-07-07 10:47:50 +06:00
Jeff Squyres
b8e93e9738 Merge pull request #1687 from ggouaillardet/topic/distclean_external 
configury: correctly perform make distclean when {libevent,hwloc,pmix…
 2016-07-06 12:57:02 -04:00
Ralph Castain
ae8444682f Remove stale variable 2016-07-05 20:07:16 -07:00
Gilles Gouaillardet
acda07472a configury: revamp and re-ident sub configure.m4 after open-mpi/ompi@846360fd4c 2016-07-06 11:59:51 +09:00
Gilles Gouaillardet
846360fd4c configury: correctly perform make distclean when {libevent,hwloc,pmix} are external components 
Thanks Jeff for the guidance

Fixes open-mpi/ompi#1683

note:
in order to keep this commit easy to review, some AS_IF([...]) were replaced with
AS_IF([false], ...) or AS_IF_([true], ...)
these will be removed and re-idented in a subsequent commit
 2016-07-06 11:57:24 +09:00
rhc54
4bc08d64e9 Merge pull request #1849 from rhc54/topic/session 
Shorten the session directory name as some OS's are now providing unu…
 2016-07-05 15:38:24 -07:00
Ralph Castain
ee56d9dc1a Shorten the session directory name as some OS's are now providing unusually long temp directory names, causing us to overflow the sockaddr field 2016-07-05 14:59:50 -07:00
rhc54
b7122963e1 Merge pull request #1847 from rhc54/topic/updatepmix 
Update pmix2x to track upstream changes
 2016-07-05 12:37:36 -07:00
Ralph Castain
7e0af3f4f0 Update pmix2x to track upstream changes 2016-07-05 11:54:22 -07:00
George Bosilca
eac5b3c668 Various cleanups in the monitoring PML. 2016-07-05 18:31:25 +02:00
George Bosilca
73972768f8 Remove an apparently useless function. 2016-07-05 18:30:11 +02:00
Artem Polyakov
a4ff9bef6d fix #2 2016-07-05 14:38:35 +03:00
Artem Polyakov
bc973cad30 fix 2016-07-05 14:33:31 +03:00
Artem Polyakov
7d96f12fec pml/yalla: fix yalla performance regression 
It was introduced in PR https://github.com/open-mpi/ompi/pull/1228
 in particular in commit 041a6a9f53.

 Original solution was using "flexible array member" called "mxm_base"
 to "fall-through" to the "mxm" send/recv member that located in the
 outer structure.

 After changing number of elements in "mxm_base" from 0 to 1 we actually
 allocating 2 mxm_req_base_t elements which leads to increased overal
 size and harms cache performance.

 It also brakes "mca_pml_yalla_check_request_state" function.
 2016-07-05 10:52:48 +03:00
Gilles Gouaillardet
267821f0dd pmix2x/pmix: fix a typo in PMIx_tool_init() 
and remove now useless local variable i
 2016-07-05 13:47:50 +09:00
Gilles Gouaillardet
efce8cc734 pmix2x/pmix: add missing include files 
pmix cannot be built on alpine linux because of some missing includes.
uid_t and gid_t are defined in unistd.h or sys/types.h, and unistd.h
is not indirectly pulled under alpine linux, so do it manually.

Thanks N.L.K Nguyen for the report

(back-ported from upstream pmix/master@c8d55350a9)
 2016-07-05 09:03:14 +09:00
rhc54
feaf020696 Merge pull request #1844 from rhc54/topic/cleanup 
Silence Coverity warnings
 2016-07-04 07:41:29 -07:00
Ralph Castain
c9ada8e095 Silence Coverity warnings 2016-07-03 20:45:08 -07:00
rhc54
0b915f1bb7 Merge pull request #1843 from rhc54/topic/listener 
Update the PMIx listener to avoid leaking sockets into children, and …
 2016-07-03 13:44:21 -07:00
Ralph Castain
673f82e2b6 Update the PMIx listener to avoid leaking sockets into children, and better handle race condition errors 2016-07-03 08:23:33 -07:00