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24 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
1a17a2a960 Fixes MEMCHECKER vs MPI_IN_PLACE in *alltoall*
cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31924.
2014-06-02 04:43:48 +00:00
Gilles Gouaillardet
8bafe06c57 Fixes *alltoall* collectives at top level
This commit :
 - Correctly retrieve the communicator size when
   checking memory and parameters
 - Ensure (sendtype,sendcount) and (recvtype,recvcount)
   matches and return with MPI_ERR_TRUNCATE otherwise
 - Return with MPI_SUCCESS without invoking the low level
   if no data is going to be transferred
 - Fixes trac:4506

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31815.

The following Trac tickets were found above:
  Ticket 4506 --> https://svn.open-mpi.org/trac/ompi/ticket/4506
2014-05-19 07:46:07 +00:00
Nathan Hjelm
0b8fc13299 MPI-3.0: update C bindings with const and consistent use of [] for
arrays.

The MPI 3.0 standard added const to all in buffers in the C bindings. This
commit adds the const keyword and in most cases casts const away. We will
eventually should go through and update the various interfaces (coll, pml,
io, etc) to take the const keyword. The group, comm, win, and datatype
interfaces have been updated with const.

cmr=v1.7.4:ticket=trac:3785:reviewer=jsquyres

This commit was SVN r29266.

The following Trac tickets were found above:
  Ticket 3785 --> https://svn.open-mpi.org/trac/ompi/ticket/3785
2013-09-26 21:56:20 +00:00
Nathan Hjelm
cb90a4a7fc Add simple algorithms to support MPI_IN_PLACE for MPI_Alltoall, MPI_Alltoallv, and MPI_Alltoallw.
Working on faster algorithms for tuned that will come at a later time.

cmr=v1.7.3:ticket=trac:2965

This commit was SVN r28952.

The following Trac tickets were found above:
  Ticket 2965 --> https://svn.open-mpi.org/trac/ompi/ticket/2965
2013-07-25 19:19:41 +00:00
Ralph Castain
89f3754559 Bring in the rest of MPI-3 Ticket #125 changes, including changes to mpi.h, function param lists, and associated documentation.
This commit was SVN r26944.
2012-08-03 01:09:59 +00:00
George Bosilca
5ff74babc6 Correctly use remote size where necessary. Completements the
patches for ticket #3105.

This commit was SVN r26490.
2012-05-24 13:41:51 +00:00
Rainer Keller
6c5532072a - Split the datatype engine into two parts: an MPI specific part in
OMPI
   and a language agnostic part in OPAL. The convertor is completely
   moved into OPAL.  This offers several benefits as described in RFC
   http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
   namely:
    - Fewer basic types (int* and float* types, boolean and wchar
    - Fixing naming scheme to ompi-nomenclature.
    - Usability outside of the ompi-layer.
 - Due to the fixed nature of simple opal types, their information is
   completely
   known at compile time and therefore constified
 - With fewer datatypes (22), the actual sizes of bit-field types may be
   reduced
   from 64 to 32 bits, allowing reorganizing the opal_datatype
   structure, eliminating holes and keeping data required in convertor
   (upon send/recv) in one cacheline...
   This has implications to the convertor-datastructure and other parts
   of the code.
 - Several performance tests have been run, the netpipe latency does not
   change with
   this patch on Linux/x86-64 on the smoky cluster.
 - Extensive tests have been done to verify correctness (no new
   regressions) using:
   1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
    ompi-ddt:
    a. running both trunk and ompi-ddt resulted in no differences
       (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
       correctly).
    b. with --enable-memchecker and running under valgrind (one buglet
       when run with static found in test-suite, commited)
   2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
      all passed (except for the dynamic/ tests failed!! as trunk/MTT)
   3. compilation and usage of HDF5 tests on Jaguar using PGI and
      PathScale compilers.
   4. compilation and usage on Scicortex.
 - Please note, that for the heterogeneous case, (-m32 compiled
   binaries/ompi), neither
   ompi-trunk, nor ompi-ddt branch would successfully launch.

This commit was SVN r21641.
2009-07-13 04:56:31 +00:00
Greg Koenig
60485ff95f This is a very large change to rename several #define values from
OMPI_* to OPAL_*.  This allows opal layer to be used more independent
from the whole of ompi.

NOTE: 9 "svn mv" operations immediately follow this commit.

This commit was SVN r21180.
2009-05-06 20:11:28 +00:00
Rainer Keller
221fb9dbca ... Delayed due to notifier commits earlier this day ...
- Delete unnecessary header files using
   contrib/check_unnecessary_headers.sh after applying
   patches, that include headers, being "lost" due to
   inclusion in one of the now deleted headers...

   In total 817 files are touched.
   In ompi/mpi/c/ header files are moved up into the actual c-file,
   where necessary (these are the only additional #include),
   otherwise it is only deletions of #include (apart from the above
   additions required due to notifier...)

 - To get different MCAs (OpenIB, TM, ALPS), an earlier version was
   successfully compiled (yesterday) on:
   Linux locally using intel-11, gcc-4.3.2 and gcc-SVN + warnings enabled
   Smoky cluster (x86-64 running Linux) using PGI-8.0.2 + warnings enabled
   Lens cluster (x86-64 running Linux) using Pathscale-3.2 + warnings enabled

This commit was SVN r21096.
2009-04-29 01:32:14 +00:00
Jeff Squyres
d1c6f3f89a * Fix a truckload of Cisco copyrights to be the same as the rest of
the code base.
 * Fix a few misspellings in other copyrights.

This commit was SVN r20241.
2009-01-11 02:30:00 +00:00
Shiqing Fan
d06604c258 Get rid of the compiler warning message when --enable-picky is used.
Do the checks according to inter/intracommunicator flags.

This commit was SVN r20063.
2008-12-03 17:44:21 +00:00
Shiqing Fan
abd21b6d17 - An update for memchecker :
1. fix a bug in pml_ob1_recvreq/sendreq.c, buffer was made defined where the request has already been released.
2. complete memchecker support for collective functions.
3. change the wrongly spelled function name of memchecker, i.e. '*_isaddressible' should be '*_isaddressable'

This commit was SVN r20043.
2008-11-27 16:34:02 +00:00
Josh Hursey
99144db970 Improve checkpoint/restart support by allowing a checkpoint to progress when the process is *not* in the MPI library. This involves creating a separate thread for polling for a checkpoint request. This thread is active when the MPI process is not in the MPI library, and paused when the MPI process is in the library.
Some MPI C interface files saw some spacing changes to conform to the coding standards of Open MPI.

Changed MPI C interface files to use {{{OPAL_CR_ENTER_LIBRARY()}}} and {{{OPAL_CR_EXIT_LIBRARY()}}} instead of just {{{OPAL_CR_TEST_CHECKPOINT_READY()}}}. This will allow the checkpoint/restart system more flexibility in how it is to behave.

Fixed the configure check for {{{--enable-ft-thread}}} so it has a know dependance on {{{--enable-mpi-thread}}} (and/or {{{--enable-progress-thread}}}).

Added a line for Checkpoint/Restart support to {{{ompi_info}}}.

Added some options to choose at runtime whether or not to use the checkpoint polling thread. By default, if the user asked for it to be compiled in, then it is used. But some users will want the ability to toggle its use at runtime.

There are still some places for improvement, but the feature works correctly. As always with Checkpoint/Restart, it is compiled out unless explicitly asked for at configure time. Further, if it was configured in, then it is not used unless explicitly asked for by the user at runtime.

This commit was SVN r17516.
2008-02-19 22:15:52 +00:00
Rainer Keller
9cd2c6f48b - Instead of calling RUNNING_ON_VALGRIND,
implement specific function, thereby
   removing bogus requirement on valgrind/valgrind.h
   dough...
 - Call specific function runindebugger() before
   doing expensive checks on each component of struct.
 - Get rid of void* warnings..

This commit was SVN r17438.
2008-02-12 20:37:51 +00:00
Shiqing Fan
54c7b71cfd Use the correct way of including memchecker.h, which will work with '--with-devel-headers'.
This commit was SVN r17435.
2008-02-12 18:01:17 +00:00
Shiqing Fan
f5792bbda5 merging the memchecker into trunk.
This commit was SVN r17424.
2008-02-12 08:46:27 +00:00
Brian Barrett
af4e86c25f Update collectives selection logic to allow for multiple components to be
used at nce (up to one unique collective module per collective function).
Matches r15795:15921 of the tmp/bwb-coll-select branch

This commit was SVN r15924.

The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
  r15795
  r15921
2007-08-19 03:37:49 +00:00
Jeff Squyres
3e2031e0e3 Finally commit something that has been sitting around in one of my
development trees since last year (had to wait for some intel tests to
run yesterday, so I finally took the time to finish this work):

 * Improve MPI API argument checking by also checking for NULL values
   (especially helps when invalid Fortran MPI handles are passed,
   because the various MPI_*f2c functions are supposed to return an
   "invalid" MPI handle [meaning NULL] when this happens).  So now
   OMPI will generate an MPI exception rather than a segv.
 * Removed a few redundant DATATYPE_NULL checks.
 * Also check for some other forms of "invalid" handles (e.g., already
   been freed, etc.) in some cases.  We could probably be a bit more
   stringent in this regard if we really wanted to.
 * Change MPI_Get_processor_name to zero out the string up to
   MPI_MAX_PROCESSOR_NAME characters, because the MPI spec says that
   the string must be at least that long.  We were already passing
   that length to gethostname(), anyway.

This commit was SVN r14100.
2007-03-21 11:10:42 +00:00
Josh Hursey
dadca7da88 Merging in the jjhursey-ft-cr-stable branch (r13912 : HEAD).
This merge adds Checkpoint/Restart support to Open MPI. The initial
frameworks and components support a LAM/MPI-like implementation.

This commit follows the risk assessment presented to the Open MPI core
development group on Feb. 22, 2007.

This commit closes trac:158

More details to follow.

This commit was SVN r14051.

The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
  r13912

The following Trac tickets were found above:
  Ticket 158 --> https://svn.open-mpi.org/trac/ompi/ticket/158
2007-03-16 23:11:45 +00:00
Brian Barrett
566a050c23 Next step in the project split, mainly source code re-arranging
- move files out of toplevel include/ and etc/, moving it into the
    sub-projects
  - rather than including config headers with <project>/include, 
    have them as <project>
  - require all headers to be included with a project prefix, with
    the exception of the config headers ({opal,orte,ompi}_config.h
    mpi.h, and mpif.h)

This commit was SVN r8985.
2006-02-12 01:33:29 +00:00
Jeff Squyres
42ec26e640 Update the copyright notices for IU and UTK.
This commit was SVN r7999.
2005-11-05 19:57:48 +00:00
Jeff Squyres
ad647b105d Error checking for MPI_IN_PLACE
This commit was SVN r7343.
2005-09-13 17:07:03 +00:00
George Bosilca
71b1cdb5f5 Cleanup the dependencies between the MPI layer and the rest of the ompi files.
Modify the includes to start with the root directory (i.e orte/datatype/datatype.h).

This commit was SVN r7306.
2005-09-12 09:17:44 +00:00
Jeff Squyres
4ab17f019b Rename src -> ompi
This commit was SVN r6269.
2005-07-02 13:43:57 +00:00