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5620 Коммитов

Автор SHA1 Сообщение Дата
Matthias Jurenz
164ee92f22 === VT upgrade to version 5.12.2 ===
Changes to OTF:
	- general:
		- updated copyright information (2011->2012)
	- otfmerge-mpi:
		- use the MPI-2 versions of MPI_Address and MPI_Type_struct
	- otfdump:
		- don't abort when reading events fails - the input tracefile might only have statistics

Changes to VT:
	- general:
		- updated version number to 5.12.2openmpi
		- updated copyright information (2011->2012)
	- configure:
		- added configure switches to enable/disable CUPTI and CUDA wrapping
		- fixed detection of C++ runtime libraries for Cray and PGI v11.x compilers
		- fixed detection of Cray compiler's OpenMP flag
		- fixed detection of MPI_IN_PLACE
		- disable support for RTLD_DEFAULT on CrayX? platforms; it's provided by dlfcn.h but not working
		- added '-force_flat_namespace' to linker flags of compiler wrappers on MacOS (causes that OpenMPI's libmpi_f77 calls the VT MPI wrapper functions - not the original ones)
		- default configure options on Cray platforms: use compiler option '--target=$XTPE_COMPILE_TARGET' only if the environment variable is set
	- VT libs:
		- added support for CUDA tracing via CUPTI callbacks and activities (runtime and driver API, kernels, memory copies, GPU idle time and GPU memory usage)
		- added support for cudaMemcpyDefault and synchronous peer-to-peer memory copies in CUDA library wrapper
		- fixed a bug in CUDA runtime wrapper initialization and thread creation
		- fixed a build bug occurred if CUDA and CUPTI found, but support for library tracing is disabled
		- use stack-allocated char-array when composing vtunify command; on some platforms system() results in exit code 127 when using a dynamically allocated char-array
		- fixed bug in async. counter plugin
		- fixed handling of empty MPI groups (MPI_GROUP_EMPTY)
		- fixed handling of MPI groups implicitly generated by MPI_Win_create
		- fixed conversion from MPI_Fint-arrays to MPI_Aint-arrays in Fortran MPI wrappers
		- fixed order of OpenMP threads based on its id (omp_get_thread_num)
		- fixed parsing of filter file to consider non-rank-specific filter rules appearing after a rank selection for disabling
		- fixed handling of 'errno' in LIBC[-I/O] wrappers for statically linked applications (set application's errno to the errno defined in the external LIBC which is used for calling the real functions)
		- suppress warnings about usage of deprecated MPI functions (OMPI_WANT_MPI_INTERFACE_WARNING=0)
	- vtunify[-mpi]:
		- fixed potential memory corruption during enqueuing recv. messages for p2p message matching
	- vtunify-mpi:
		- use the MPI-2 versions of MPI_Address and MPI_Type_struct
		- removed unused MPI wrappers
		- fixed assertion in p2p message matching which occurred when processing local traces with disabled ranks
	- vtdyn:
		- load user-specified shared libraries (-s SHLIB) into the mutatee before starting the instrumentation; adds support for instrumenting shared libraries which are loaded during runtime
	- compiler wrappers:
		- fixed detection of MPI library linked in the path form (e.g. libmpi.a instead of -lmpi)
		- fixed corrupt library order when using vtnvcc for linking MPI/CUDA mixed program
	- OPARI:
		- fixed Fortran parsing for detecting end of block DO loops

This commit was SVN r26114.
2012-03-08 13:01:30 +00:00
Pavel Shamis
102da281c4 OPENIB BTL - use orte_show_help instead of BTL_ERROR print in case ibv_reg_mr failed.
This commit was SVN r26111.
2012-03-08 09:04:03 +00:00
Mike Dubman
4e7e7d7c3f print error which is ignored on upper layer
This commit was SVN r26106.
2012-03-06 14:25:56 +00:00
George Bosilca
a78a7bd8e8 The tuned collectives can now deal with more than 2Gb of data.
This commit was SVN r26103.
2012-03-05 22:23:44 +00:00
George Bosilca
762b3e13a9 Use the correct name for the datatype destruction function.
This commit was SVN r26100.
2012-03-05 15:54:53 +00:00
George Bosilca
64a2979dc3 Always return something.
This commit was SVN r26099.
2012-03-05 15:54:15 +00:00
George Bosilca
7d523a8852 Avoid calling the bcast with counts larger than INT_MAX.
This commit was SVN r26098.
2012-03-05 14:30:30 +00:00
George Bosilca
e8c358c188 Allow Open MPI to deal with size_t internally.
This commit was SVN r26097.
2012-03-05 14:10:26 +00:00
George Bosilca
af9b6f6161 Minor beautification.
This commit was SVN r26095.
2012-03-05 13:23:54 +00:00
Abhishek Kulkarni
08ca0f80bc Fix a C/R bug where the restart hung due to
dangling fds in the openib btl.

This commit was SVN r26094.
2012-03-04 06:57:33 +00:00
George Bosilca
f83670211e Allow the user to define dynamic rules for messages larger than 2GB.
This commit was SVN r26084.
2012-03-02 21:16:23 +00:00
George Bosilca
8791ade293 Help he selection of the right algorithm for large data (> 2Gb). Thanks
to Fujitsu for the patch.

This commit was SVN r26080.
2012-03-02 19:12:22 +00:00
Terry Dontje
3e70cad203 Correct a few alignment problems to address the issue brought up in ticket #2964
This commit was SVN r26078.
2012-03-01 17:29:40 +00:00
Nathan Hjelm
f1525bdbff ob1: fix two fragment leaks
- MAJOR! get src descriptor leaks if mca_bml_base_send fails
 - minor. descriptor leaked in mca_pml_send_request_start_copy if the btl returns OMPI_ERR_RESOURCE_BUSY.

This commit was SVN r26077.
2012-03-01 15:53:39 +00:00
Matthias Jurenz
b4523496c8 Changes to VT: Fixed compiler warning about unused variable when compiling on MacOS
This commit was SVN r26076.
2012-03-01 12:17:27 +00:00
Mike Dubman
540b3c0c25 update mxm mtl to changes in mxm api
This commit was SVN r26073.
2012-02-29 22:02:34 +00:00
Jeff Squyres
97b3603036 A bunch of fixes and improvements to Open MPI's various command line tools.
* fixed some bugs where "unknown" tokens were allowed on the command
   line (which should really only be used for ortertun).
 * if an unknown token is encountered, print a short error to stderr
   and quit with a nonzero exit status
 * if we don't find the right number of parameters to an option, print
   a short error to stderr and quit with a nonzero exit status
 * when --help is given, print the help message to stdout (not stderr)
   and quit with a zero exit status
 * added --showme:help option to the wrapper compilers
 * updated docs in opal/util/cmd_line.h
 * other small/miscellaneous CLI parsing bugs in various tools

I won't bore you with what we did before.  :-)  Here's some examples
of what the new behavior looks like:

{{{
% ompi_info --bogus
ompi_info: Error: unknown option "--bogus"
Type 'ompi_info --help' for usage.
% ompi_info --param bogus
ompi_info: Error: option "--param" did not have enough parameters (2)
Type 'ompi_info --help' for usage.
%
}}}

This commit was SVN r26072.
2012-02-29 17:52:38 +00:00
Nathan Hjelm
a7209e309a ugni: opps, sendi was missing from Makefile.am
This commit was SVN r26067.
2012-02-28 16:10:35 +00:00
Shiqing Fan
fec1099509 fix two typecasts.
This commit was SVN r26066.
2012-02-28 15:28:57 +00:00
Edgar Gabriel
636cf786be local_heap_sort should really be a static function.
This commit was SVN r26065.
2012-02-28 14:42:56 +00:00
Matthias Jurenz
9c822b065f Even more changes belonging to r26051
This commit was SVN r26063.

The following SVN revision numbers were found above:
  r26051 --> open-mpi/ompi@f245ed965a
2012-02-27 15:53:14 +00:00
Edgar Gabriel
025c14a19a fix to the lustre configure logic.
This commit was SVN r26057.
2012-02-27 14:37:26 +00:00
Vishwanath Venkatesan
7c9c3ede61 Modified implementation for the static segmentation read algorithm with improved
performance and bug fixes.

This commit was SVN r26056.
2012-02-24 20:55:33 +00:00
Vishwanath Venkatesan
d5a9223a9a Removed a variable which was allocated but never used.
This commit was SVN r26055.
2012-02-24 20:48:52 +00:00
Vishwanath Venkatesan
326bc69df4 Modified implementation for static file write all algorithm which fixes all the previous
bugs and provides improved performance.

This commit was SVN r26054.
2012-02-24 20:47:09 +00:00
Jeff Squyres
027226ee19 ''Really'' fix Fortran attribute copy callbacks. Put the original
logic back (that was replaced by r25965 and r26000) and fix the one
place that missed OMPI_LOGICAL_2_INT.  This missing OMPI_LOGICAL_2_INT
was the real problem.

This commit was SVN r26053.

The following SVN revision numbers were found above:
  r25965 --> open-mpi/ompi@b10ebf4b2d
  r26000 --> open-mpi/ompi@90811cb50c
2012-02-24 16:42:30 +00:00
Matthias Jurenz
b785c9efe9 Missing change belonging to r26051
This commit was SVN r26052.

The following SVN revision numbers were found above:
  r26051 --> open-mpi/ompi@f245ed965a
2012-02-24 16:24:22 +00:00
Matthias Jurenz
f245ed965a Changes to OTF:
- otfmerge-mpi:
		- use the MPI-2 versions of MPI_Address and MPI_Type_struct

Changes to VT:
	- VT libs:
		- suppress warnings about usage of deprecated MPI functions (OMPI_WANT_MPI_INTERFACE_WARNING=0)
	- vtunify-mpi:
		- use the MPI-2 versions of MPI_Address and MPI_Type_struct
		- removed unused MPI wrappers

This commit was SVN r26051.
2012-02-24 15:48:51 +00:00
Jeff Squyres
11b50156c3 Remove extraneous spaces from the ugni help output.
This commit was SVN r26047.
2012-02-24 13:54:19 +00:00
Matthias Jurenz
99a3951c48 Changes to VT:
- fixed platform detection on BlueGene when configuring for the frontend

This commit was SVN r26042.
2012-02-24 10:10:50 +00:00
Rolf vandeVaart
b0a84b0a7d New btl that extends sm btl to support GPU transfers within a node.
Uses new CUDA IPC support.  Also, a few minor changes in PML to take
advantage of it.

This code has no effect unless user asks for it explicitly via 
configure arguments.  Otherwise, it is either #ifdef'ed out or
not compiled.

This commit was SVN r26039.
2012-02-24 02:13:33 +00:00
Brian Barrett
aff49e98b4 Don't remove mpijavac.1 during distclean
This commit was SVN r26038.
2012-02-23 22:57:51 +00:00
Nathan Hjelm
8217c46666 ompi_free_list: allocate payload if payload size > 0 in the fl_mpool = NULL case
This commit was SVN r26027.
2012-02-23 16:47:28 +00:00
Nathan Hjelm
9843cd0466 ugni: missed one more merge typo
This commit was SVN r26026.
2012-02-23 16:39:15 +00:00
Nathan Hjelm
d7cd95c802 vader: fix typo
This commit was SVN r26025.
2012-02-23 16:29:45 +00:00
Nathan Hjelm
c83fe003a0 ugni: fix branch merge typo
This commit was SVN r26024.
2012-02-23 16:16:21 +00:00
Matthias Jurenz
3aafb6ed89 Append VampirTrace specific CXXFLAGS (possibly given by --with-contrib-vt-flags) to CXXFLAGS. They could contain flags which are essential for the success of the STL configure test (e.g. -library=stlport4).
This commit was SVN r26017.
2012-02-23 12:46:45 +00:00
Matthias Jurenz
e59c5bb7bc Changes to VT:
- fixed compiler warnings if using non-GNU compiler, respectively if _FORTIFY_SOURCE is 0 or not defined

This commit was SVN r26016.
2012-02-23 09:05:10 +00:00
Rolf vandeVaart
c7a0ce2755 Two new mpools. They are not used now (and by default, not compiled)
but they will be soon.  Provide support for GPU buffer transfers within a node.

This commit was SVN r26008.
2012-02-22 23:32:36 +00:00
Ralph Castain
da5f290cef During this initial deployment, output a more definitive error message when libs cannot load
This commit was SVN r26005.
2012-02-22 21:59:31 +00:00
Ralph Castain
9fccc86f6c Only emit the java bindings warning if we actually are building them
This commit was SVN r26004.
2012-02-22 21:56:47 +00:00
Nathan Hjelm
dc94b6a3fb vader: minor fast box optimization
This commit was SVN r26002.
2012-02-22 20:53:49 +00:00
Jeff Squyres
90811cb50c Some updates based on Craig's review of #3023. Be a little more
defensive about the check of the flag value for the C-based keyvals.
We would never have had a problem because of the specific input data,
but being defensive is good (and it makes the code a little less
subtle / easier to read).

Also add in more comments about exactly what is going on, since this
is complicated stuff.  :-)

This commit was SVN r26000.
2012-02-22 20:32:23 +00:00
Nathan Hjelm
4c7b7c675a vader: minor code cleanup. move xpmem_create to component_init
This commit was SVN r25999.
2012-02-22 18:32:40 +00:00
Jeff Squyres
d595ec2ef2 Remove the use of all deprecated functions so that we don't induce
warnings about using deprecated functions in our C++ inline functions.

This commit was SVN r25994.
2012-02-21 21:52:23 +00:00
Mike Dubman
81bd5eee8d in mxm, use sender_len field and not actual_len when returning result from probe
This commit was SVN r25993.
2012-02-21 19:55:16 +00:00
Jeff Squyres
b6a90434e4 Fix some include file header ordering issues for some BSDs, suggested
by Paul Hargrove.

This commit was SVN r25984.
2012-02-21 13:32:14 +00:00
Ralph Castain
0ad3f14281 Uninstall the java wrapper compiler
This commit was SVN r25979.
2012-02-21 02:54:01 +00:00
Jeff Squyres
5656efe85d Don't distribute these files; they're generated.
This commit was SVN r25977.
2012-02-21 00:31:04 +00:00
Ralph Castain
ae1f248a9a Ensure the man page gets into the tarball
This commit was SVN r25975.
2012-02-20 23:40:36 +00:00