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Граф коммитов

644 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
24f2961156 ess/base: fix a misc memory leak in orte_ess_base_proc_binding()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-07-12 17:01:04 +09:00
James Clark
20f5840cbb Add a compilation flag that adds unwind info to all files that are present in the stack starting from MPI_Init.
This is so when a debugger attaches using MPIR, it can step out of this stack back into main.
This cannot be done with certain aggressive optimisations and missing debug information.

Signed-off-by: James Clark <james.clark@arm.com>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>

Co-authored-by: Jeff Squyres <jsquyres@cisco.com>
2019-03-27 14:32:15 +00:00
Ralph Castain
e56ee1e06a Remove the remaining cruft from dual oob transport
* When we moved to allowing dual rml/oob transports, we added a bunch of
stuff that is no longer needed. Remove it so as to simplify the
messaging system.

* Fix the routed/radix component so it correctly returns the parent's
vpid

Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-02-08 11:12:31 -08:00
Gilles Gouaillardet
88ac05fca6 misc fixes
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-02-08 11:11:25 -08:00
Ralph Castain
125d236173 Move from the use of regex to compression
We've been fighting the battle of trying to create a regex generator and
parser that can handle arbitrary hostname schemes - without long-term
success. The worst of it is that there is no way of checking to see if
the computed regex is correct short of parsing it and doing a
character-by-character comparison with the original string. Ugh...there
has to be a better solution.

One option is to investigate using 3rd-party regex libraries as
those are coming from communities whose sole focus is resolving that
problem. However, someone would need to spend the time to investigate
it, and we'd have to find a license-friendly implementation.

Another option is to quit beating our heads against the wall and just
compress the information. It won't be as much of a reduction, but we
also won't keep hitting scenarios where things break. In this case, it
seems that "perfection" is definitely the enemy of "good enough".

This PR implements the compression option while retaining the
possibility of people adding regex-generating components. The
compression code used in ORTE is consolidated into the opal/compress
framework. That framework currently held bzip and gzip components for
use in compressing checkpoint files - since we no longer support C/R, I
have .opal_ignore'd those components.

However, I have left the original framework APIs alone in case someone
ever decides to redo C/R. The APIs of interest here are added to the
framework - specifically, the "compress_block" and "decompress_block"
functions. I then moved the ORTE zlib compression code into a new
component in this framework.

Unfortunately, the framework currently is a single-select one - i.e.,
only one active component at a time. Since I .opal_ignore'd the other
two and made the priority of zlib high, this isn't a problem. However,
if someone wants to re-enable bzip/gzip or add another component, they
might need to transition opal/compress to a multi-select framework.

Included changes:

* Consolidate the compression code into the opal/compress framework

* Move the ORTE zlib compression code into a new opal/compress/zlib
  component

* Ignore the bzip and gzip components in opal/compress framework

* Add a "compress_base_limit" MCA param to set the threshold above which
  we compress data - defaults to 4096 bytes

* Delete stale brucks and rcd components from orte/grpcomm framework

* Delete the orte/regx framework

* Update the launch system to use opal/compress instead of string regex

* Provide a default module if no zlib is available

* Fix some misc multi-node issues

* Properly generate the nidmap in response to a "connection warmup"
  message so the remote daemon knows the children it needs to launch.

* Remove stale references to orte_node_regex

* opal_byte_object_t's are not OPAL objects - properly release allocated
  memory.

* Set the topology

* Currently only handling homogeneous case

* Update the compress framework files to conform

* Consolidate open/close into one "frame" file. Ensure we open/close the
  framework

Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-02-08 11:11:14 -08:00
Howard Pritchard
b46e15535a orte: shutdown
be more careful about closing framewworks as part of
orte_finalize.  Owing to recent restructuring in opal to handle
finalize in a more general fashion, the missing framework
closes were causing meltdowns as the mca vars subsystem
was cleaning itself up.

This problem was recently reported by Siegmar:

https://www.mail-archive.com/users@lists.open-mpi.org//msg32946.html

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2019-01-04 11:04:13 -07:00
KAWASHIMA Takahiro
8e7d874e14 ess/pmi: Fix --enable-timing compilation error
This commit fixes an compilation error when configured
with `--enable-timing`.

Procedures in the function `orte_ess_base_app_setup`
in `orte/mca/ess/base/ess_base_std_app.c` are moved
to `orte/mca/ess/pmi/ess_pmi_module.c`
and `orte/mca/ess/singleton/ess_singleton_module.c`
in the recent commit 57f6b94fa5.

In `ess_pmi_module.c`, the first argument of the
`OPAL_TIMING_ENV_NEXT` macro should have been adapted
to the destination function but was not.

In `ess_singleton_module.c`, `OPAL_TIMING_ENV_INIT`
was not used in the destination function originally.
So `OPAL_TIMING_ENV_NEXT` cannot be used in the function.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-11-12 16:10:48 +09:00
Aurelien Bouteiller
348bf8e13f
Prevent errmgr invokation from crashing in finalize
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2018-10-31 16:28:04 -04:00
Ralph H Castain
fc81d0d519 Replace asprintf with opal_asprintf
Silence the flood of warnings from ORTE

Signed-off-by: Ralph H Castain <rhc@open-mpi.org>
2018-10-06 19:32:37 +00:00
Ralph Castain
57f6b94fa5 Cleanup race condition in finalize
See https://github.com/open-mpi/ompi/issues/5798#issuecomment-426545893
for a lengthy explanation

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-10-03 09:42:59 -07:00
Ralph Castain
cfdd08d309 Remove stale ORTE code
Functionality moved to PMIx

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-10-02 11:55:36 -07:00
Gilles Gouaillardet
d234caef74 ess/hnp: plug a memory leak in rte_finalize()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-08-30 10:07:17 +09:00
Boris Karasev
57683366ca pmix: added check for pmix fence status
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-08-06 15:01:57 +06:00
Gilles Gouaillardet
a05456ab5e orte: only set the ORTE_NODE_ALIAS attribute when required
When there is no alias for a given node, do not set the
ORTE_NODE_ALIAS attribute to an empty string any more.

Thanks Erico for reporting this issue.
Thanks Ralph for the guidance.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-04-25 11:43:46 +09:00
Boris Karasev
3796307a57 timings: added new timing points
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-03-21 05:16:25 +02:00
Ralph Castain
d1071397ac Update the orte/ess framework
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-25 08:43:44 -08:00
Ralph Castain
1cd8e34765 Restrict MPI apps to cleaning up job-level dirs
MPI apps should only cleanup the session directory to the level of their
own job.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-12 17:14:24 -08:00
Ralph Castain
6216225bda Ensure cleanup of registered files/dirs
Resolve a race condition between registering for a file to be removed upon termination and actual creation of that file by providing attributes that identify whether the path is a file or directory. This removes the need for PMIx to detect the difference.

Refs #4686

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-11 11:05:30 -08:00
Ralph Castain
4cd7f3b202 Convert nidmap to regx framework
Handle the need for different regex generator/parsers by moving the
orte/util/nidmap and orte/util/regex code into a new "regx" framework.
Use the original code to complete a "fwd" component, and create a
scaffold for IBM's "reverse" component.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-10 20:28:21 -08:00
Ralph Castain
07427c6d89 Update to PMIx v3.0 PR for cleanup registration
If available, have apps use registration capability to cleanup their session directories. Setup capability for vader to register its shared memory file location - let someone familiar with that code do so.

Final cleanup to track uid/gid, update the opal/pmix API to pass flags for ignore and leave top directory alone

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-12-18 06:53:11 -08:00
Ralph Castain
75d411f3ea Ensure we update the routing plan so that tree spawn works!
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-10-19 14:02:06 -07:00
Ralph Castain
fcb7a2f29b Minor cleanups for when using external pmix
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-09-24 09:53:04 -07:00
Ralph Castain
e575c4d6f9 Fix tool connection logic so we properly search for default session server, perform specified number of retries, etc.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit 7c755e01004f8b86c71f1729662979ea45ab1adb)
2017-09-19 13:35:46 -07:00
Ralph Castain
5708872112 Implement support for "local" range when publishing data
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit 2d54f7e0dd3a47260b0b2634aae3361316005933)
2017-09-18 19:34:08 -07:00
Ralph Castain
3c914a7a97 Complete the fix of the ORTE DVM. We will now use "prun" instead of "orterun -hnp foo" to execute jobs. This provides the feature of automatic discovery of the orte-dvm so you don't need to manually enter URI's or contact file locations. All IO is forwarded to prun.
Still in the "needs to be done" category:

* mapping/ranking/binding options aren't correctly supported

* if the DVM encounters some errors (e.g., not enough resources for the job), the resulting error is globally set and impacts any subsequent job submission

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-09-16 13:13:07 -07:00
Josh Hursey
ad87aa2674 Merge pull request #4121 from jjhursey/explore/dlopen-local
mca: Dynamic components link against project lib
2017-08-25 13:15:51 -05:00
Joshua Hursey
e1d079544b mca: Dynamic components link against project lib
* Resolves #3705
 * Components should link against the project level library to better
   support `dlopen` with `RTLD_LOCAL`.
 * Extend the `mca_FRAMEWORK_COMPONENT_la_LIBADD` in the `Makefile.am`
   with the appropriate project level library:
```
MCA components in ompi/
       $(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la
MCA components in orte/
       $(top_builddir)/orte/lib@ORTE_LIB_PREFIX@open-rte.la
MCA components in opal/
       $(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la
MCA components in oshmem/
       $(top_builddir)/oshmem/liboshmem.la"
```

Note: The changes in this commit were automated by the script in
the commit that proceeds it with the `libadd_mca_comp_update.py`
script. Some components were not included in this change because
they are statically built only.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-08-24 11:56:16 -04:00
Ralph Castain
68029b27e4 Fix the orte-dvm operations so that orterun can connect and execute an application. There is a lingering problem, though. The first invocation of orterun succeeds every time. However, subsequent invocations have a high probability of hanging in the OOB connection handshake.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-08-23 17:31:08 -07:00
Ralph Castain
088b6cdeee Silence coverity warnings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-08-17 09:49:35 -07:00
Ralph Castain
65fb6070d9 Update tool support by adding MCA params to direct orted's to drop
session and/or system-level tool rendezous files. Ensure PMIx is
enabled for tools

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-08-15 17:49:47 -07:00
Ralph Castain
f39ce67982 Merge pull request #3951 from rhc54/topic/hwloc2
Update to hwloc 2.0.0a
2017-08-01 15:18:31 -06:00
Ralph Castain
e94786f4b7 Revert "Check for OPAL_PREFIX and set corresponding PMIX_PREFIX if found"
This reverts commit 3744967adb.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-08-01 08:14:12 -06:00
Ralph Castain
3744967adb Check for OPAL_PREFIX and set corresponding PMIX_PREFIX if found
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-31 09:14:01 -06:00
Boris Karasev
e20b581529 pmix: fixed immediate request
This commit fixes a hang when using external PMIx v1 module

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2017-07-28 15:53:48 +06:00
Ralph Castain
7a83fdb9bb Update to hwloc 2.0.0a with shmem support.
Update to support passing of HWLOC shmem topology to client procs
Update use of distance API per @bgoglin
Have the openib component lookup its object in the distance matrix
Bring usnic up-to-date
Restore binding for hwloc2

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-25 20:26:22 -07:00
Ralph Castain
0042c758f1 Update the tools support so it allows tools to access PMIx
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-25 17:10:08 -07:00
Ralph Castain
b225366012 Bring the ofi/rml component online by completing the wireup protocol for the daemons. Cleanup the current confusion over how connection info gets created and
passed to make it all flow thru the opal/pmix "put/get" operations. Update the PMIx code to latest master to pickup some required behaviors.

Remove the no-longer-required get_contact_info and set_contact_info from the RML layer.

Add an MCA param to allow the ofi/rml component to route messages if desired. This is mainly for experimentation at this point as we aren't sure if routing wi
ll be beneficial at large scales. Leave it "off" by default.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-20 21:01:57 -07:00
Gilles Gouaillardet
60aa9cfcb6 hwloc: add support for hwloc v2 API
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-20 17:39:44 +09:00
Gilles Gouaillardet
9f29f3bff4 hwloc: since WHOLE_SYSTEM is no more used, remove useless
checks related to offline and disallowed elements

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-20 17:39:21 +09:00
Gilles Gouaillardet
1a34224948 hwloc: do not set the HWLOC_TOPOLOGY_FLAG_WHOLE_SYSTEM flag
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-20 17:39:16 +09:00
Ralph Castain
fca68b070b Merge pull request #3934 from rhc54/topic/singleton
Fix the isolated pmix component. Cleanup the ess/singleton component …
2017-07-19 16:02:37 -05:00
Ralph Castain
543c16b28d Fix the isolated pmix component. Cleanup the ess/singleton component - we shouldn't be automatically discovering the local topology as that is now done on-demand.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-19 12:14:29 -07:00
Gilles Gouaillardet
da34e2f109 ess/base: silence a warning
by fixing a static initializer

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-19 09:30:53 +09:00
Ralph Castain
8a98aab6cc Fix signal forwarding on ORTE daemons so that _all_ daemons do it, regardless of environment. Add missing support for SIGTSTP and a few others.
Thanks to Eugene Dedits for reporting the problem.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-18 09:58:55 -07:00
Mark Allen
efc25168cd symbol name pollution: making some vars static
As part of addressing symbol name pollution, I'm switching a few
vars/functions to static.

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-07-11 02:13:22 -04:00
Ralph Castain
bd4a6fee22 Attempt to detect when we are direct-launched without the necessary PMI support, and thus are incorrectly identified as being "singleton". Advise the user on the required PMI(x) support and error out.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-29 15:26:53 -07:00
Ralph Castain
f4411c4393 Enable use of OFI fabrics for launch and other collective operations. Update the PMIx repo to the latest master to get the required support for the server to "push" modex info, and to retrieve all its own "modex" values for sending back to mpirun. Have mpirun cache them in its local modex hash as OFI goes point-to-point direct and doesn't route - so the remote daemons don't need a copy of this connection info.
Remove the opal_ignore from the RML/OFI component, but disable that component unless the user specifically requests it via the "rml_ofi_desired=1" MCA param. This will let us test compile in various environments without interfering with operations while we continue to debug

Fix an error when computing the number of infos during server init

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-23 19:57:21 -07:00
Ralph Castain
38636f4f0a Ensure we properly cleanup on termination, including when terminating due to ctrl-c
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-21 06:33:37 -07:00
Ralph Castain
51b4078b70 Merge pull request #3648 from rhc54/topic/ofi
Clean up the conduit open code so we return detectable errors when co…
2017-06-02 18:08:55 -07:00
Jeff Squyres
af9565ec25 ess: add missing <signal.h> header
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-06-02 14:11:40 -07:00